BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645168|ref|NP_207338.1| cag pathogenicity island
protein (cag21) [Helicobacter pylori 26695]
(142 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223208.1| cag island protein [Helicobacter pylori J99] 285 4e-79
ref|NP_223922.1| putative [Helicobacter pylori J99] 27 0.29
ref|NP_223098.1| putative [Helicobacter pylori J99] 26 0.49
ref|NP_223686.1| putative [Helicobacter pylori J99] 25 0.84
ref|NP_223644.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_222963.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 23 3.2
ref|NP_223290.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 23 4.2
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 23 4.2
ref|NP_223773.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223735.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Heli... 22 5.4
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 22 5.4
ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori ... 22 5.4
ref|NP_223336.1| METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRA... 22 9.3
ref|NP_223270.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_223208.1| cag island protein [Helicobacter pylori J99]
Length = 142
Score = 285 bits (728), Expect = 4e-79
Identities = 137/142 (96%), Positives = 140/142 (98%)
Query: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPK 60
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPK
Sbjct: 1 MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPK 60
Query: 61 ETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNN 120
ETLEQKVA+LNDYNDKNVNIKFD+ISLGSFQPNDNLGINAMWGIQNLLMSQMM +YGPNN
Sbjct: 61 ETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMSNYGPNN 120
Query: 121 PFMYGYAPTYSDSSFLPPILGY 142
FMYGYAPTYSDSSFLPPILGY
Sbjct: 121 SFMYGYAPTYSDSSFLPPILGY 142
>ref|NP_223922.1| putative [Helicobacter pylori J99]
Length = 352
Score = 26.6 bits (57), Expect = 0.29
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 56 IEIPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLMSQMMGD 115
+++ K V + N +VN FDN S+G F PN+ A W N Q +G
Sbjct: 261 VDLAKLCANLSVCIGNASGPLHVNALFDNQSIG-FYPNELTASIARWRPFN---EQFLGI 316
Query: 116 YGPN 119
PN
Sbjct: 317 TPPN 320
>ref|NP_223098.1| putative [Helicobacter pylori J99]
Length = 146
Score = 25.8 bits (55), Expect = 0.49
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 55 KIEIPKETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPND 94
K+E+ E AVL D ND + + + DN ++ S + D
Sbjct: 97 KVEVKLINKESFQAVLKDANDLSADFELDNHAIKSVEYKD 136
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 25.0 bits (53), Expect = 0.84
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 8 IKLLFAWCLIIGMFNAPLNA--DQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQ 65
++LL W L++ +F PL A + TD D+ +N + V IE K+ E+
Sbjct: 1 MRLLLWWVLVLSLFLDPLRAVEEHETDAVDLFLIFNQINQLNQV------IETYKKNPER 54
Query: 66 KVAVLNDYNDKNVNIKFDNISLGSFQPNDNLGIN 99
+ KN IK +++ D +GI+
Sbjct: 55 SAEISLYNTQKNDLIK--SLTSKVLNERDKIGID 86
Score = 21.6 bits (44), Expect = 9.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 39 EDMALNSVGLVSRDQLKIEIPKETL 63
ED+ L +G+V + L P ++L
Sbjct: 583 EDVMLKIMGIVEKHHLSFAFPSQSL 607
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 24.6 bits (52), Expect = 1.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 34 KDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAVLNDYNDKNVN 79
KD S ED+ + G + E KE E+++ D D+N++
Sbjct: 107 KDNSKEDVNFFANGEIKESSRVYEANKEGFERRITKRYDLIDRNID 152
>ref|NP_222963.1| putative [Helicobacter pylori J99]
Length = 351
Score = 23.5 bits (49), Expect = 2.4
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 9/49 (18%)
Query: 48 LVSRDQ----LKIEIPKETLEQK-----VAVLNDYNDKNVNIKFDNISL 87
+V+R Q L+IE + LE++ VAV+++ ND N IK+ I +
Sbjct: 163 IVARSQGELILEIERNNQILEKRLTPKIVAVISESNDPNEIIKYKIIGI 211
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 23.1 bits (48), Expect = 3.2
Identities = 12/43 (27%), Positives = 20/43 (45%)
Query: 83 DNISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYG 125
+ I +G F + + A W I L + ++G +G NN G
Sbjct: 117 EGILMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSG 159
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 23.1 bits (48), Expect = 3.2
Identities = 10/42 (23%), Positives = 23/42 (53%)
Query: 43 LNSVGLVSRDQLKIEIPKETLEQKVAVLNDYNDKNVNIKFDN 84
LN+ G ++ + ++ E K+A++ +Y+ ++N F N
Sbjct: 486 LNNFGNLTLSGQNQRLGNKSYEAKIALMEEYSSLHLNDYFTN 527
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 22.7 bits (47), Expect = 4.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 61 ETLEQKVAVLNDYNDKNVNIKFDNISLGSFQPNDNLG 97
E E+ +LN+YN N +K + DNLG
Sbjct: 48 ENYEKLNNLLNNYNTLNTLVKLSSDPSAVNDARDNLG 84
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 22.7 bits (47), Expect = 4.2
Identities = 10/42 (23%), Positives = 19/42 (44%)
Query: 69 VLNDYNDKNVNIKFDNISLGSFQPNDNLGINAMWGIQNLLMS 110
+LND+N + NI + + + + GI N++ S
Sbjct: 424 ILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKS 465
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 22.3 bits (46), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 57 EIPKETLEQKVAVLNDYNDK 76
E P+E+LE + LND+ +K
Sbjct: 84 EEPEESLEDIFSSLNDFQEK 103
>ref|NP_223735.1| putative [Helicobacter pylori J99]
Length = 345
Score = 22.3 bits (46), Expect = 5.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 51 RDQLKIEIPKETLEQKVAVLNDYNDKNVNIKFDNISLGS 89
+D++ I I QK+ Y DK N +DN+ L S
Sbjct: 135 KDKIDINIRAGEFGQKLGDWLVYVDKTENNSYDNLVLFS 173
>ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 217
Score = 22.3 bits (46), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 36 ISPEDMALNSVGLVSRDQLKIEIPKETLEQ 65
+ EDMA+ V + + +L I + TLEQ
Sbjct: 97 VGQEDMAIEEVVTLCQKRLFIGLSVNTLEQ 126
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 22.3 bits (46), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 99 NAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYSDS 133
N M + +L SQ GD N PF + +PT D+
Sbjct: 213 NLMLNMIAVLDSQSWGDAILNAPFEFTNSPTDCDN 247
>ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 78
Score = 22.3 bits (46), Expect = 5.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 33 IKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAV 69
+KD+ + + + + + ++ IEIP E E+ V V
Sbjct: 29 VKDLGADSLDVVELIMALEEKFNIEIPDEQAEKIVNV 65
>ref|NP_223336.1| METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 168
Score = 21.6 bits (44), Expect = 9.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 26 NADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAVLND 72
NA++N I I P + G + IE+ K LE + +LN+
Sbjct: 114 NANRNNPISLIVPCHRVVRKNGALGGYNGGIEVKKWLLEFESKILNE 160
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 21.6 bits (44), Expect = 9.3
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 57 EIPKETLEQKVAVLNDYNDKNVNI 80
+ P +T ++ +LN+Y+ KN+ +
Sbjct: 21 QTPSKTPDEIKQILNNYSHKNLKL 44
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,712
Number of Sequences: 1491
Number of extensions: 7721
Number of successful extensions: 27
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 18
length of query: 142
length of database: 494,079
effective HSP length: 69
effective length of query: 73
effective length of database: 391,200
effective search space: 28557600
effective search space used: 28557600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)