BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645172|ref|NP_207342.1| cag pathogenicity island
protein (cag25) [Helicobacter pylori 26695]
(115 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223212.1| cag island protein [Helicobacter pylori J99] 219 2e-59
ref|NP_222769.1| sodium/proline symporter [Helicobacter pyl... 24 1.2
ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter... 23 1.6
ref|NP_223741.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 3.6
ref|NP_224016.1| BIOTIN SYNTHETASE [Helicobacter pylori J99] 22 4.7
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 22 6.1
ref|NP_224090.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223586.1| putative [Helicobacter pylori J99] 21 8.0
>ref|NP_223212.1| cag island protein [Helicobacter pylori J99]
Length = 115
Score = 219 bits (558), Expect = 2e-59
Identities = 113/115 (98%), Positives = 114/115 (98%)
Query: 1 MKFFTRITDSYKKVVVTLGLVVTTNPLMAVTSPAEGVTETKTLVIQIISVLAIVGGCALG 60
MKFFTRITDSYKKVVVTLGLVVTTNPLMAVTSPA GVTETK+LVIQIISVLAIVGGCALG
Sbjct: 1 MKFFTRITDSYKKVVVTLGLVVTTNPLMAVTSPATGVTETKSLVIQIISVLAIVGGCALG 60
Query: 61 VKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS 115
VKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS
Sbjct: 61 VKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS 115
>ref|NP_222769.1| sodium/proline symporter [Helicobacter pylori J99]
Length = 496
Score = 23.9 bits (50), Expect = 1.2
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 50 VLAIVGGCALGVKGIADIWK 69
V++++G C +G+ G+A + K
Sbjct: 282 VISLIGACVMGLLGVAYVHK 301
>ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter pylori J99]
Length = 96
Score = 23.5 bits (49), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 12 KKVVVTLGLVVTTNPLMAVTSPAEGVTETKTLV 44
KKV+V LG++ N LMA T+ K LV
Sbjct: 2 KKVIVALGVLAFANVLMA--------TDVKALV 26
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 22.7 bits (47), Expect = 2.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 56 GCALGVKGIADIWK 69
GC LG KG DI K
Sbjct: 271 GCKLGAKGACDILK 284
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 22.3 bits (46), Expect = 3.6
Identities = 8/27 (29%), Positives = 15/27 (54%)
Query: 62 KGIADIWKISDDIKRGQATVFAYAQPI 88
KG +W + D IK G ++ ++ Q +
Sbjct: 69 KGGVVVWIVGDKIKNGNKSLTSFRQAL 95
>ref|NP_224016.1| BIOTIN SYNTHETASE [Helicobacter pylori J99]
Length = 282
Score = 21.9 bits (45), Expect = 4.7
Identities = 9/35 (25%), Positives = 20/35 (56%)
Query: 54 VGGCALGVKGIADIWKISDDIKRGQATVFAYAQPI 88
+G C+ G+ G+ + W+ ++ R A++ + PI
Sbjct: 151 LGLCSGGIFGLNESWEDRIEMLRALASLSPHTTPI 185
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 21.6 bits (44), Expect = 6.1
Identities = 10/36 (27%), Positives = 17/36 (46%)
Query: 67 IWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLST 102
IW +S I++G + P+ + G +IY T
Sbjct: 152 IWFVSRGIEKGIEKLNVVLMPLLFVIFIGLLIYAMT 187
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 21.2 bits (43), Expect = 8.0
Identities = 8/31 (25%), Positives = 19/31 (60%)
Query: 2 KFFTRITDSYKKVVVTLGLVVTTNPLMAVTS 32
+FF ++ + KK+ + LG++++ L+ S
Sbjct: 50 EFFKQLLHNKKKLYIALGILLSLIALIVALS 80
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 21.2 bits (43), Expect = 8.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 49 SVLAIVGGCALGVKGIADIWKISDDIKRGQATVFA 83
S+ +GGC L KG +D+I G +++A
Sbjct: 23 SLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYA 57
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,782
Number of Sequences: 1491
Number of extensions: 3183
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 9
length of query: 115
length of database: 494,079
effective HSP length: 67
effective length of query: 48
effective length of database: 394,182
effective search space: 18920736
effective search space used: 18920736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)