BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645176|ref|NP_207346.1| ribosomal protein L31
(rpl31) [Helicobacter pylori 26695]
         (67 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223216.1|  50S RIBOSOMAL PROTEIN L31 [Helicobacter py...   142  1e-36
ref|NP_223516.1|  putative [Helicobacter pylori J99]               21  4.4
ref|NP_223345.1|  FERROUS IRON TRANSPORT PROTEIN B [Helicoba...    21  5.7
ref|NP_223101.1|  putative [Helicobacter pylori J99]               20  7.5
ref|NP_222751.1|  ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT...    20  7.5
ref|NP_223822.1|  PHOSPHOPENTOMUTASE [Helicobacter pylori J99]     20  9.7
ref|NP_223241.1|  SIGNAL PEPTIDASE I [Helicobacter pylori J99]     20  9.7
ref|NP_223235.1|  AMINOPEPTIDASE [Helicobacter pylori J99]         20  9.7

>ref|NP_223216.1| 50S RIBOSOMAL PROTEIN L31 [Helicobacter pylori J99]
          Length = 67

 Score =  142 bits (359), Expect = 1e-36
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60
          MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF
Sbjct: 1  MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKF 60

Query: 61 KQRYNLK 67
          KQRYNLK
Sbjct: 61 KQRYNLK 67



>ref|NP_223516.1| putative [Helicobacter pylori J99]
          Length = 218

 Score = 21.2 bits (43), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 44 YTGSDKIADTAGRVEKFKQRY 64
          +   +K+ + A R+EKF +RY
Sbjct: 14 FKSDEKLLEGAFRLEKFFKRY 34



>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
          Length = 642

 Score = 20.8 bits (42), Expect = 5.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 9   YIPCKVTCVTSGKE 22
           YIPC    +T G+E
Sbjct: 596 YIPCFAATITFGRE 609



>ref|NP_223101.1| putative [Helicobacter pylori J99]
          Length = 347

 Score = 20.4 bits (41), Expect = 7.5
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 26  LSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKFKQRYNLK 67
           +S +     D+       + G      + G+++ FK+ +N K
Sbjct: 293 VSLRANGNCDVCELSQMCFNGGGHRNASGGKIDGFKESFNYK 334



>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
           J99]
          Length = 742

 Score = 20.4 bits (41), Expect = 7.5
 Identities = 6/29 (20%), Positives = 14/29 (47%)

Query: 11  PCKVTCVTSGKEIEVLSTKPEMRIDISSF 39
           PCK+ C+    ++ +   K   ++  + F
Sbjct: 714 PCKIACLLEKNQLVLKEIKRAQKVKENDF 742



>ref|NP_223822.1| PHOSPHOPENTOMUTASE [Helicobacter pylori J99]
          Length = 413

 Score = 20.0 bits (40), Expect = 9.7
 Identities = 7/18 (38%), Positives = 10/18 (54%)

Query: 43  FYTGSDKIADTAGRVEKF 60
           FYT +D +   A   E+F
Sbjct: 170 FYTSADSVFQIAAHEERF 187



>ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99]
          Length = 290

 Score = 20.0 bits (40), Expect = 9.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 39  FCHPFYTGSDK 49
           + HPF +G+DK
Sbjct: 124 YLHPFESGNDK 134



>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
          Length = 496

 Score = 20.0 bits (40), Expect = 9.7
 Identities = 10/26 (38%), Positives = 13/26 (49%)

Query: 9   YIPCKVTCVTSGKEIEVLSTKPEMRI 34
           Y P  +     GK IEV +T  E R+
Sbjct: 320 YKPDDILISKEGKSIEVRNTDAEGRL 345



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,131
Number of Sequences: 1491
Number of extensions: 1986
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 67
length of database: 494,079
effective HSP length: 43
effective length of query: 24
effective length of database: 429,966
effective search space: 10319184
effective search space used: 10319184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)