BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645179|ref|NP_207349.1| hypothetical protein
[Helicobacter pylori 26695]
(321 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223219.1| putative [Helicobacter pylori J99] 548 e-158
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 38 3e-04
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 37 7e-04
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 33 0.010
ref|NP_223245.1| putative [Helicobacter pylori J99] 33 0.010
ref|NP_223176.1| putative [Helicobacter pylori J99] 32 0.017
ref|NP_223645.1| putative [Helicobacter pylori J99] 31 0.038
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 31 0.038
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 30 0.084
ref|NP_223515.1| putative [Helicobacter pylori J99] 29 0.14
ref|NP_224041.1| putative [Helicobacter pylori J99] 28 0.24
ref|NP_223137.1| putative [Helicobacter pylori J99] 28 0.32
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.42
ref|NP_223830.1| putative [Helicobacter pylori J99] 27 0.54
ref|NP_223644.1| putative [Helicobacter pylori J99] 27 0.54
ref|NP_223560.1| putative [Helicobacter pylori J99] 27 0.54
ref|NP_223253.1| putative [Helicobacter pylori J99] 27 0.71
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 27 0.92
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 27 0.92
ref|NP_223771.1| putative Outer membrane protein [Helicobac... 26 1.2
ref|NP_223642.1| putative [Helicobacter pylori J99] 26 1.2
ref|NP_223490.1| putative [Helicobacter pylori J99] 26 1.2
ref|NP_222967.1| putative [Helicobacter pylori J99] 26 1.2
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 26 1.2
ref|NP_223971.1| putative [Helicobacter pylori J99] 26 1.6
ref|NP_223884.1| SINGLE-STRAND BINDING PROTEIN [Helicobacte... 26 1.6
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 26 1.6
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 26 1.6
ref|NP_223025.1| putative [Helicobacter pylori J99] 26 1.6
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_223542.1| putative [Helicobacter pylori J99] 25 2.7
ref|NP_223056.1| transketolase [Helicobacter pylori J99] 25 2.7
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 25 3.5
ref|NP_223773.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223627.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT C [Heli... 25 3.5
ref|NP_223297.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_222955.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 25 3.5
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 24 4.6
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 24 4.6
ref|NP_223725.1| putative outer membrane protein [Helicobac... 24 4.6
ref|NP_223659.1| putative [Helicobacter pylori J99] 24 4.6
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 24 6.0
ref|NP_223387.1| putative [Helicobacter pylori J99] 24 6.0
ref|NP_223066.1| putative [Helicobacter pylori J99] 24 6.0
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 24 6.0
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 7.8
ref|NP_223322.1| putative [Helicobacter pylori J99] 23 7.8
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 23 7.8
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 23 7.8
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 23 7.8
ref|NP_222840.1| putative [Helicobacter pylori J99] 23 7.8
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 548 bits (1413), Expect = e-158
Identities = 278/321 (86%), Positives = 288/321 (89%)
Query: 1 MEQNKKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEVGVAEICKATKIASK 60
MEQNKKSLENLDLSDVQNISKDISG LEELSLKNLDKNLQILKEVG AEICKATKIASK
Sbjct: 1 MEQNKKSLENLDLSDVQNISKDISGTALEELSLKNLDKNLQILKEVGAAEICKATKIASK 60
Query: 61 NIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQNQETDP 120
NIHSILEKRYESLSRVHARGFIQILE EYKIDLSAW+KEFDK C FKEGV EEQ QET P
Sbjct: 61 NIHSILEKRYESLSRVHARGFIQILEHEYKIDLSAWVKEFDKVCVFKEGVGEEQKQETSP 120
Query: 121 EEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERG 180
EE K PLKVE+DYSINQAN LSK SKWKPFV+VLGVVVI+L VVIIQNSSSLKEER
Sbjct: 121 EETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQNSSSLKEERE 180
Query: 181 QESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKD 240
QE AIK TK + FN+ NP EE K EPTPKLEEK KEQDKQ KEAIKE+PNTIYIIPK+D
Sbjct: 181 QERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKENPNTIYIIPKRD 240
Query: 241 IWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQDYNDSKTRRF 300
IWVEVIDLDEKKNSFQKVFKK+Y LE KNHRLLLRFGHGHL LKNNHQEQDYNDSKTRRF
Sbjct: 241 IWVEVIDLDEKKNSFQKVFKKSYPLEAKNHRLLLRFGHGHLILKNNHQEQDYNDSKTRRF 300
Query: 301 LYEPNKGLTLINEAQYKELQR 321
LYEPNKGLTLINEAQYK LQ+
Sbjct: 301 LYEPNKGLTLINEAQYKALQQ 321
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 38.1 bits (87), Expect = 3e-04
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 181 QESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQE---KEAIKEDPNTIYIIP 237
+ SA K KK K P +E + PK E KE K+E KEA E N I+I
Sbjct: 173 ERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAENESKNQIFIAE 232
Query: 238 KKDIWVEVIDLDEKK 252
K D W++ KK
Sbjct: 233 KNDTWIKTKRKKHKK 247
Score = 24.3 bits (51), Expect = 4.6
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 26/98 (26%)
Query: 196 KANPIEENKPEPTPKLEEKPKEQDKQ----------------EKEAIKEDPNTIYIIPKK 239
K + ++ P+PTPK +K ++ K+ E+ A KE P IPKK
Sbjct: 131 KHHALKHQTPKPTPKPIKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKK--EIPKK 188
Query: 240 DIWVEVI--------DLDEKKNSFQKVFKKNYSLETKN 269
+I + I ++ +K+ +++ KK E+KN
Sbjct: 189 EIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAENESKN 226
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 37.0 bits (84), Expect = 7e-04
Identities = 22/64 (34%), Positives = 34/64 (52%), Gaps = 3/64 (4%)
Query: 196 KANPIEENKPEPTPKLEEKPKEQDKQE--KEAIKEDPNTIYIIPKKDIWVEVIDLDEKKN 253
K P E KP+P PK+EE KE+ K+E KE KE+ +PK+ +++ +K+
Sbjct: 110 KPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKE-KSVPKQVTTKDIVKEKDKQE 168
Query: 254 SFQK 257
K
Sbjct: 169 ESNK 172
Score = 37.0 bits (84), Expect = 7e-04
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 158 GVVVIVLAVVIIQNSSSLK---EERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEK 214
G + +++ I +S+ K E + K KK K P +E KP+P PK + K
Sbjct: 47 GTTKVTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPK 106
Query: 215 PKEQDKQEKEAIKEDPNTIYIIPKKD 240
PK + K + E K P PKK+
Sbjct: 107 PKPKPKPKPEP-KPKPEPKVEEPKKE 131
Score = 34.7 bits (78), Expect = 0.003
Identities = 24/58 (41%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Query: 176 KEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQE---KEAIKEDP 230
KEE +E K K K P + KP+P PK E KPK + K E KE KE+P
Sbjct: 83 KEEPKKEEPKKETKPKP---KPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPKEEP 137
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 33.1 bits (74), Expect = 0.010
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 199 PIEENKPEPTPKLEEKPKEQDKQEKEAIK-EDPNTIYIIPKKDIWVEVID--LDEKKNSF 255
PIE+ KPEP PK + +PK+ + + K K E ++ +K +V++ +++KK
Sbjct: 109 PIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEE 168
Query: 256 QKVFKKNY 263
+K KK +
Sbjct: 169 KKPVKKEF 176
Score = 28.1 bits (61), Expect = 0.32
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 7/61 (11%)
Query: 186 KSGTKKSFFNKANPIE-----ENKPEPTPKLEEKPKEQDKQEKEAIKE--DPNTIYIIPK 238
K K K +E E K E +E+K +++ +EK+ +K+ DPN + +PK
Sbjct: 127 KPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEEKKPVKKEFDPNQLSFLPK 186
Query: 239 K 239
+
Sbjct: 187 E 187
Score = 26.2 bits (56), Expect = 1.2
Identities = 18/57 (31%), Positives = 28/57 (48%)
Query: 205 PEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLDEKKNSFQKVFKK 261
P PK EKPK + K + + + PN + KK VE + E+K +KV ++
Sbjct: 103 PPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQ 159
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 33.1 bits (74), Expect = 0.010
Identities = 22/102 (21%), Positives = 48/102 (46%), Gaps = 3/102 (2%)
Query: 44 KEVGVAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDL---SAWMKEF 100
K+ + E CK K I + L+ +SL+ ++ G + ++ + L W+ +
Sbjct: 257 KDSLMLETCKTPTDWQKPISTNLKNLDDSLNLLNLNGILYLIHNPSDLSLRRKELWLSKL 316
Query: 101 DKACTFKEGVSEEQNQETDPEEKTKNPLKVEIDYSINQANIK 142
+ + +FK ++ E + NP ++I Y+ N+++IK
Sbjct: 317 ENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIK 358
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 32.3 bits (72), Expect = 0.017
Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 39/192 (20%)
Query: 38 KNLQILKEVGVAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWM 97
+N + +K+ + E KA + ++N ++ EK Y+ R F ER D
Sbjct: 258 ENKREIKQEAIKEPKKANQ-GTENAPTLEEKNYQKAERK----FDAKEERRRSRDERKKT 312
Query: 98 KEFDKACTFKEGVSEEQNQETDPEEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVL 157
K KA F+E E+++ E D +E + +E+D + N K
Sbjct: 313 KATKKAMEFEE--REKEHDERDEKETEERRKALEMDKGNEKVNAK--------------- 355
Query: 158 GVVVIVLAVVIIQNSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKE 217
+N + +E E + ++ + ++E+ + +E PK
Sbjct: 356 ------------ENEREINQESANEPSSENNATLKDTENTSVLKESAAK-----KEAPKP 398
Query: 218 QDKQEKEAIKED 229
K+EK +KE+
Sbjct: 399 SSKEEKRRLKEE 410
Score = 24.3 bits (51), Expect = 4.6
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 178 ERGQESAIKSGTK-KSFFNKANPIEENKPEPTPKLEEKPKEQDKQE------KEAIKEDP 230
+ G + SG++ K++F + + + + ++E+K + D +E +EAIKE
Sbjct: 213 DAGTLGKLFSGSQSKNYFAYYDALVKKEKRKEVRIEKKEERIDARENKREIKQEAIKE-- 270
Query: 231 NTIYIIPKK-DIWVEVIDLDEKKNSFQKVFKKNYSLE-----------TKNHRLLLRFGH 278
PKK + E E+KN +QK +K + E TK + + F
Sbjct: 271 ------PKKANQGTENAPTLEEKN-YQKAERKFDAKEERRRSRDERKKTKATKKAMEFEE 323
Query: 279 GHLSLKNNHQEQDYNDSKTRRFLYEPNKGLTLIN 312
+ H E+D +++ RR E +KG +N
Sbjct: 324 R----EKEHDERDEKETEERRKALEMDKGNEKVN 353
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 31.2 bits (69), Expect = 0.038
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 211 LEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLDEKKNSFQKVFKKNYSLETKNH 270
LE++ + + K+AI++ P +Y K + +V+ +D +Q+V K +LE
Sbjct: 852 LEDESLDLSQALKQAIEKLPKDVYQYHKTTLKTDVLIIDSSNERYQEVQKLIKNLE---R 908
Query: 271 RLLLRFGHGHLSLKNNHQ 288
R L+++ + + L+ N++
Sbjct: 909 RELVKWDNLYFQLEQNNE 926
Score = 24.6 bits (52), Expect = 3.5
Identities = 21/82 (25%), Positives = 34/82 (40%), Gaps = 16/82 (19%)
Query: 196 KANPIEENKPEPTPKLEEKPKEQDKQEKEAIKE-----------DPNTIYIIPKKDIWVE 244
+ P++EN +K KEQ+KQ E KE + NT+++ ++D
Sbjct: 2113 EVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLNTLFVNEEED---- 2168
Query: 245 VIDLDEKKNSFQKVFKKNYSLE 266
L E K +K Y +E
Sbjct: 2169 -YKLLEYKGFVVNAYKTKYQVE 2189
Score = 24.3 bits (51), Expect = 4.6
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 31/149 (20%)
Query: 173 SSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNT 232
+S++ QE + T + + +E + E+ +EQ QE++ + P T
Sbjct: 353 NSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTT 412
Query: 233 IY----------IIPKKDIW-----------------VEVIDLDEKKNSFQKVFKKNYSL 265
I + PK D ++ I+L ++ + Q++ K +Y
Sbjct: 413 IKQETPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELLKELQAKQEILKGDYYA 472
Query: 266 ETKNHRLLLRF-GHGHLS---LKNNHQEQ 290
K +L +F G G L K H E+
Sbjct: 473 TLKEQEILAQFSGWGGLESYFKKAQHPEE 501
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 31.2 bits (69), Expect = 0.038
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 194 FNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLDEKKN 253
FN++ I N P+ PK E+ + ++K EK E P T + K I+ + K
Sbjct: 352 FNQSPSISYNAPKQEPKSTERIEGREKLEKRERIETPQTPMLSAKDRIFHNLF-----KQ 406
Query: 254 SFQKVFKKNYSL 265
V+++NY L
Sbjct: 407 VQTLVYERNYEL 418
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 30.0 bits (66), Expect = 0.084
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 192 SFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLDEK 251
+F +EN E PK +K + K+EKE KE II +++I
Sbjct: 165 AFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKII----- 219
Query: 252 KNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQDYNDSKTRRFLYEPNKGLT 309
K QK +K S + K + L LSL ++ +ND + F ++ L+
Sbjct: 220 KKDIQKGYKALKSSQRKWYCLWACSKKSKLSLM---PKEIFNDKQFTYFKFDKRLALS 274
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 29.3 bits (64), Expect = 0.14
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 179 RGQESAIKSGTKKSFFNKANPI-EENKPEPTPKLEEKPKEQDKQEKEAIKED 229
+ Q +AI+ G K+ +K PI +EN + +E PK K+EK +KE+
Sbjct: 455 KDQNNAIQQGETKNNESKNTPISKENAAK-----KEAPKPSSKEEKRRLKEE 501
Score = 26.9 bits (58), Expect = 0.71
Identities = 34/140 (24%), Positives = 52/140 (36%), Gaps = 8/140 (5%)
Query: 173 SSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPT------PKLEEKPKEQDKQEKEAI 226
+S K E+G K+ NK P+EENK +P +++ + E K + AI
Sbjct: 403 TSQKGEKGNAPIYLQERHKAKENK-QPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAI 461
Query: 227 KEDPNTIYIIPKKDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNN 286
++ I E E K K+ E K + R +
Sbjct: 462 QQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRARE- 520
Query: 287 HQEQDYNDSKTRRFLYEPNK 306
HQE+D + + RR E NK
Sbjct: 521 HQERDEKELEERRKALEMNK 540
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 28.5 bits (62), Expect = 0.24
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 176 KEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYI 235
+++R +E+A K+ + ++ +E++P P KPK ++ + KE+ +
Sbjct: 35 RKKRFRENAQKNAESSNHETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDN--- 91
Query: 236 IPKKDIWVEVIDLDEKKN-SFQKVFKKNYSLETK 268
K + E++ ++E+ F K KK K
Sbjct: 92 -NKVEGVTEILHVNERGTLGFHKELKKGVEANNK 124
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 28.1 bits (61), Expect = 0.32
Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 154 VLVLGVVVIVLAVVIIQNSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEE 213
++ +G+ V++L V I+ S E+ +E + KK+ K +++ + E +L +
Sbjct: 38 IVAIGIFVLILFVFFIRPVSFQDPEKREEYIER--LKKNHERKMI-LQDKQKEEQMRLYQ 94
Query: 214 KPKEQDKQEKEAIKE 228
KE++ ++K+ +KE
Sbjct: 95 AKKERESRQKQDLKE 109
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.7 bits (60), Expect = 0.42
Identities = 23/96 (23%), Positives = 44/96 (44%), Gaps = 12/96 (12%)
Query: 171 NSSSLKEE----RGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAI 226
N+ SLK E + +E +++ K F EN K+E K + +K+ ++ I
Sbjct: 83 NNESLKIEVYNKQFKEEQLRNSQVKGIFTLGKKTNEN----LEKIESKKESINKENEKKI 138
Query: 227 KEDPNTIYIIPKKDIWVEVIDLDEKKNSFQKVFKKN 262
K + + + KK E + D + ++ ++KKN
Sbjct: 139 KNEASLQVLTQKK----EKEEKDFTDSCWKNLYKKN 170
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 27.3 bits (59), Expect = 0.54
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 140 NIKLSKGLSKWKP---FVLVLGVVVI--VLAVVIIQNSSSLKE--------ERGQESAIK 186
N+K + K P F +GV I +L V + S KE E ++ A K
Sbjct: 60 NVKTADDYLKTHPNSWFNSAIGVTAITAMLMNVCFADDQSKKEVAQAQKEAENARDRANK 119
Query: 187 SGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKED 229
SG + + E+ K E + E+ K++ +QEK+ +++
Sbjct: 120 SGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQE 162
Score = 26.2 bits (56), Expect = 1.2
Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 8/88 (9%)
Query: 51 ICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKACTFKEGV 110
+C A + K + ++ + R + G I++ + E K + E +K T +E
Sbjct: 92 VCFADDQSKKEVAQAQKEAENARDRANKSG-IELEQEEQKTEQEKQKTEQEKQKTEQEKQ 150
Query: 111 SEEQNQETDPEEK-------TKNPLKVE 131
EQ ++ +EK T N +KVE
Sbjct: 151 KTEQEKQKTEQEKQKTSNIETNNQIKVE 178
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 27.3 bits (59), Expect = 0.54
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 1 MEQNKKSLENLDLSDVQNISK------DISGATLEELSL--KNLDKNLQILKEVGVAEIC 52
+ +NK +L ++ I + I G T EE S +N D +L+ + +
Sbjct: 308 INENKLKENHLSANNANKIKQFFFNNGSILGWTKEEQSAIQENRDYSLR-------SALL 360
Query: 53 KATKIASKNIHSILEKRYESL------SRVHARGFIQILEREYKIDLSAWMKEFDKACTF 106
+IA I L+K YES+ ++ + F +IL + A+ + +DK +
Sbjct: 361 SLEEIAQAKIE--LQKYYESVYVNGDGNKREIKPFKEILRDTNNFE-KAYKERYDKLVSL 417
Query: 107 -------KEGVSEEQNQETDPEEKTKNPLKVEIDYSINQAN 140
KEG +E QN + KN ++ +I Q N
Sbjct: 418 SAAIIQAKEGGNERQNSSANNNNPIKNTIETNTSNNIIQNN 458
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 27.3 bits (59), Expect = 0.54
Identities = 37/133 (27%), Positives = 55/133 (40%), Gaps = 18/133 (13%)
Query: 92 DLSAWMKEFDKACTFKEGVSEEQNQETDPEEKTKNPLKVEIDYSINQANIKLSKGLSKWK 151
+LS+ ++ +K KE ++E + E+KT PLK + + IK K LSK K
Sbjct: 242 NLSSVLQSLEK----KEPQNKEHANPPNNEKKTP-PLKEALQMNA----IKRDKTLSKKK 292
Query: 152 PFVLVLGVVVIVLAVVIIQNSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKL 211
P + +A S E + +K+ P +N P P K
Sbjct: 293 PEKTPIHAKTQTIA-------PSATPENAPKIPLKTLPLMPLIGANPPPNDNAPTPLEK- 344
Query: 212 EEKPKE-QDKQEK 223
EEK KE D +EK
Sbjct: 345 EEKTKEISDNKEK 357
>ref|NP_223253.1| putative [Helicobacter pylori J99]
Length = 329
Score = 26.9 bits (58), Expect = 0.71
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 162 IVLAVVIIQNSSSLKEERGQESAIKSGTKKSF------------FNKANPIEEN-KPEPT 208
I+LA ++ + +++++E S I + KK F+ A +E K + T
Sbjct: 205 IILASIVQKEAANVEEMPLIASVIFNRLKKGMPLQMDGALNYQEFSHAKVTKERIKTDNT 264
Query: 209 PKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLDEKKNSFQKVFKKN 262
P K K K ++ + + PKK ++ + + +KK++F +K++
Sbjct: 265 PYNTYKFKGLPKNPVGSVSLEAVRAVVFPKKTDFLYFVKMPDKKHAFSATYKEH 318
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 26.6 bits (57), Expect = 0.92
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 177 EERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYII 236
E+ Q +I +++ +K N EENK E PKE + K +KE+ +
Sbjct: 469 EQAEQGCSIGENKEEAVASKENK-EENKTEAA-----APKENQTENKTEVKEEK---IEV 519
Query: 237 PKKDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNH 287
P K ++ L E+ + ++K +L K++ LL G S K H
Sbjct: 520 PTKTTYL----LLEEAGINLETYEKILALLQKSNNTLLVVGEEIYSHKQAH 566
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 26.6 bits (57), Expect = 0.92
Identities = 22/82 (26%), Positives = 39/82 (46%), Gaps = 2/82 (2%)
Query: 143 LSKGLSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERGQESAIKSGTKKSFF--NKANPI 200
+SKGLS +L + ++VIV ++ + +S +E +ESA+ S F + +
Sbjct: 1 MSKGLSIGNKIILCVALIVIVCVSILGVSLNSRVKEILKESALHSMQDSLHFKVKEVQSV 60
Query: 201 EENKPEPTPKLEEKPKEQDKQE 222
EN ++E E K+E
Sbjct: 61 LENTYTSMGIVKEMLPEDTKRE 82
Score = 25.8 bits (55), Expect = 1.6
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 4/71 (5%)
Query: 41 QILKEVGVAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEF 100
+ILKE + + + K + S+LE Y S+ V + +RE KI L +K F
Sbjct: 36 EILKESALHSMQDSLHFKVKEVQSVLENTYTSMGIVKEM-LPEDTKREIKIQL---LKNF 91
Query: 101 DKACTFKEGVS 111
A + GVS
Sbjct: 92 ILANSHVAGVS 102
>ref|NP_223771.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 179
Score = 26.2 bits (56), Expect = 1.2
Identities = 20/60 (33%), Positives = 23/60 (38%)
Query: 156 VLGVVVIVLAVVIIQNSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKP 215
V +V L VV + K G S T A EE K EP P +EEKP
Sbjct: 6 VFSFLVAFLLVVGCSHKMDNKTVAGDVSTKAVQTAPVTTEPAPEKEEPKQEPAPVVEEKP 65
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 26.2 bits (56), Expect = 1.2
Identities = 20/61 (32%), Positives = 32/61 (51%), Gaps = 10/61 (16%)
Query: 170 QNSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKED 229
QN+ KE E A K K F+++NPI P K +E KE+ ++E E+ +++
Sbjct: 125 QNNEDNKENSELEKAFK---KDLSFSQSNPI------PLDK-KETSKEEKEEELESKEKE 174
Query: 230 P 230
P
Sbjct: 175 P 175
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 26.2 bits (56), Expect = 1.2
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 210 KLEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLD-------EKKNSFQKVFK-K 261
K+++K +EQ+ + Y+ +++ E I L E++N+F ++ K +
Sbjct: 27 KMQKKAQEQENDGSK------RPSYVDSDYEVFSETIFLQNMVYQPIEERNAFFQLTKDE 80
Query: 262 NYSLETKNHRLLLRFGHGH-----LSLKN--NHQEQDYNDSKTRRFLYEPNK 306
+ S +N +LL + LS N N+ E + N+S+ FLY+P +
Sbjct: 81 DNSFNPENSVILLNEPSDNSEKNLLSYPNDPNNNEDNANNSQKNPFLYKPKR 132
Score = 24.3 bits (51), Expect = 4.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 120 PEEKTKNPLKVEID----YSINQANIKLSKGLSKW 150
P+ KTKNP +E Y + +I +SK +W
Sbjct: 130 PKRKTKNPKLIEYSQQDFYPLKNGDIIMSKEGDQW 164
>ref|NP_222967.1| putative [Helicobacter pylori J99]
Length = 172
Score = 26.2 bits (56), Expect = 1.2
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 230 PNTIYIIPKKDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGH 278
P+ I KD ++++ + KNSF++ F K+ LE K + F H
Sbjct: 125 PDIILYQTNKDN-IKILAILSVKNSFRERFTKDALLEIKTFAIACNFSH 172
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 26.2 bits (56), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 12 DLSDVQNISKDISGATLEELSLKNLDKNLQILK 44
D SD+ NI+ +SG T+ NLDK + + K
Sbjct: 537 DSSDILNITTHVSGTTM------NLDKQVNLFK 563
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 25.8 bits (55), Expect = 1.6
Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 137 NQANIKLSKGLSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERGQESAIKSGTKKSFFNK 196
+Q N KLS+ + + L + + V+ N LKE + S + S ++ FFN
Sbjct: 24 SQTNAKLSRSNEQLSDMLYKLNESLRIYQNVLSNNQDQLKEIKKANSTLTS--QRRFFNA 81
Query: 197 A-------NPIEENKPEPTPKLEEKPKE-QDKQEKEAIKEDPNTIYIIPKKDIWVEVIDL 248
+ + + + KL+ K ++ E E + ++ +++ V +L
Sbjct: 82 SQIRLMDTDALLKQSALELEKLQALEKHLKESMEHERLIKESQALFLQEHCPYLSGVKNL 141
Query: 249 DEKKNSFQKVFKKNYSLETKNHRL 272
+E N+ + K N K +L
Sbjct: 142 EEASNALEVQEKNNALFLLKEPKL 165
>ref|NP_223884.1| SINGLE-STRAND BINDING PROTEIN [Helicobacter pylori J99]
Length = 181
Score = 25.8 bits (55), Expect = 1.6
Identities = 19/80 (23%), Positives = 33/80 (40%), Gaps = 6/80 (7%)
Query: 176 KEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYI 235
K + Q ++++ FN A P N P P + + Q+ KE + P+
Sbjct: 108 KSDNPQANSMQDSMTHENFNNAYPTNYNAPSQDPFSQAQSYPQNAYTKENSQAQPS---- 163
Query: 236 IPKKDIWVEVIDLDEKKNSF 255
K V I++DE++ F
Sbjct: 164 --KYQNSVPEINIDEEEIPF 181
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 25.8 bits (55), Expect = 1.6
Identities = 21/85 (24%), Positives = 34/85 (39%)
Query: 81 FIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQNQETDPEEKTKNPLKVEIDYSINQAN 140
F + ERE +D + + K+GV + + D E + ++ N N
Sbjct: 112 FTRTKEREKVVDFANPYMKVALGVISKDGVIKNIEELKDKELIVNKGTTADFYFTKNYPN 171
Query: 141 IKLSKGLSKWKPFVLVLGVVVIVLA 165
IKL K + F+ +L I LA
Sbjct: 172 IKLLKFEQNTETFLALLNNKAIALA 196
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.8 bits (55), Expect = 1.6
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 152 PFVLVLGVVVIVLAVVIIQ---------NSSSLKEERGQESAIKSGTKKSF--FNKANPI 200
PF+ G+ V+++ +V+I S +S +K K+ F+ +
Sbjct: 112 PFIGDFGLYVLIMLMVVISYLILFKLPPKSVFYPYMNKTQSLLKEIYKQCLQAFSPNFSL 171
Query: 201 EENKPEPTPKLEEKPKEQDKQEKEAIKEDP 230
++ E TP +K + + +EKE +KE+P
Sbjct: 172 KKEGFENTPSDSQKKETNNDKEKENLKENP 201
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.8 bits (55), Expect = 1.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 201 EENKPEPTPKLEEKPKEQDKQE-------KEAIKEDPNTIYIIPKKD 240
EE K E +++E+ KE+ KQE +E K+D + P KD
Sbjct: 179 EEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKD 225
Score = 23.9 bits (50), Expect = 6.0
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 200 IEENKPEPTPKLEEKPKEQDKQEKEAIKED 229
+E + TPK E + +E K+E + IKE+
Sbjct: 232 LETQEELETPKEETQEQEPIKEETQEIKEE 261
Score = 23.9 bits (50), Expect = 6.0
Identities = 14/52 (26%), Positives = 24/52 (45%), Gaps = 2/52 (3%)
Query: 170 QNSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQ 221
Q + KEE +E +K K + ++ + P+ EEKPK+ + Q
Sbjct: 168 QEGETPKEEAQEE--VKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQ 217
Score = 23.5 bits (49), Expect = 7.8
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 175 LKEERGQESAIKSGTKKSFFNKANPIEENKPEPT--------PKLEEKPKE--------- 217
+K+E +E + K+ NP +E KP+ PK EE KE
Sbjct: 181 VKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELET 240
Query: 218 --QDKQEKEAIKEDPNTI 233
++ QE+E IKE+ I
Sbjct: 241 PKEETQEQEPIKEETQEI 258
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.4 bits (54), Expect = 2.1
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 202 ENKPEPTPKLEEKPKEQDKQEKEAIK----------------EDPNTIYIIPKKDIWVEV 245
+N + L+E+ KEQ Q EA+K E ++ +K + +
Sbjct: 59 KNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQ 118
Query: 246 IDLDEKKNSFQKVFKKNYSLE 266
+LDEK Q++ +K +E
Sbjct: 119 KELDEKSKQVQELHQKEAEIE 139
>ref|NP_223542.1| putative [Helicobacter pylori J99]
Length = 174
Score = 25.0 bits (53), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 200 IEENKPEPTPKLEEKPKEQDKQEKEAIK 227
+E KP P PK E K + + ++ + A+K
Sbjct: 129 VENGKPTPMPKYEPKTEVEIRRYEGALK 156
>ref|NP_223056.1| transketolase [Helicobacter pylori J99]
Length = 641
Score = 25.0 bits (53), Expect = 2.7
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 216 KEQDKQEKEAIKEDPNTIYII-PKKDIWVEVIDLDEKKNSFQKVFKKNYSLETK 268
KE KQ KE + +PN +II PK + E + + + S + +++K+ S +TK
Sbjct: 268 KEVLKQSKENAQINPNESFIISPKNKMHFEEVKV--RGISLEALWEKSLSPKTK 319
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 24.6 bits (52), Expect = 3.5
Identities = 14/38 (36%), Positives = 21/38 (54%)
Query: 9 ENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEV 46
+NL + D + S +I GA +E + K LQ LKE+
Sbjct: 167 QNLIIIDHKEKSAEILGACFDERFKTEIAKELQDLKEL 204
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 24.6 bits (52), Expect = 3.5
Identities = 27/104 (25%), Positives = 54/104 (50%), Gaps = 9/104 (8%)
Query: 5 KKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKEVGVAEICKATKIASKNIHS 64
K++ EN ++ ++ + ++++ T + S+KN +LQI K+ GV E KA + I+
Sbjct: 130 KQNQENQEM--LKGLQQNLNQFTQKLESVKNKTLDLQIPKQDGVDE--KAYQEWYAQIYQ 185
Query: 65 ILEKRYESLSRVHARGFIQIL-----EREYKIDLSAWMKEFDKA 103
IL K + + A + I+ E +Y I + K+++K+
Sbjct: 186 ILYKGWRGVFYHKASVSVLIMITKDGEFDYTILSYSDFKDYNKS 229
>ref|NP_223627.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT C [Helicobacter pylori J99]
Length = 93
Score = 24.6 bits (52), Expect = 3.5
Identities = 13/63 (20%), Positives = 31/63 (48%), Gaps = 3/63 (4%)
Query: 179 RGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNT---IYI 235
+G + + + F + N ++ + TP E++PK Q KE + ++ ++ ++
Sbjct: 28 KGHLAEVLGFVENIFALETNNLKTDTHLSTPLREDEPKSQPHIAKEILSQNKHSQDHYFV 87
Query: 236 IPK 238
+PK
Sbjct: 88 VPK 90
>ref|NP_223297.1| putative [Helicobacter pylori J99]
Length = 137
Score = 24.6 bits (52), Expect = 3.5
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 175 LKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKED 229
L + G E+ K+ K F K + +E E +P L+ K K K+ K +
Sbjct: 40 LHKNHGSETETKNDKKLYDFTKNSGLEGVDLEKSPNLKSHKKSDKKFYKQLAKNN 94
>ref|NP_222955.1| putative [Helicobacter pylori J99]
Length = 179
Score = 24.6 bits (52), Expect = 3.5
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 126 NPLKVEIDYSINQANIKLSKGLSKWKPFVLVLGVVVI--------VLAVVIIQNSSSLKE 177
N L + Y I + I + LS F L +GV I VL + +++N + E
Sbjct: 71 NVLLTQAIYPI-ETRILHANPLSYSNAFSLQVGVKNISKFSLNKCVLRLEVLKNPHNFVE 129
Query: 178 ERGQESAIKSGTKKSFFNKANPIEENK 204
ER + +K +K+F K P EE+K
Sbjct: 130 ERAFKWFVKKSYEKTFKEKILP-EESK 155
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 24.6 bits (52), Expect = 3.5
Identities = 17/79 (21%), Positives = 38/79 (47%), Gaps = 6/79 (7%)
Query: 200 IEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLDEKKNSFQKVF 259
IE P P +E+K ++E+ + +P TI+ K + ++ + + +KV
Sbjct: 266 IEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH---KSEYYINGLSTSLPLDVQEKVI 322
Query: 260 KKNYSLETKNHRLLLRFGH 278
+S++ + L+ R+G+
Sbjct: 323 ---HSIKGLENALITRYGY 338
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 447
Score = 24.3 bits (51), Expect = 4.6
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 239 KDIWVEVIDLDEKKNSFQKVFKKNYSLETKNH 270
KD ++VI+ DE F + + Y+L+ K H
Sbjct: 189 KDEGLKVINRDETNALFNPINARTYALDKKAH 220
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 24.3 bits (51), Expect = 4.6
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 249 DEKKNSFQKVFKKNYSLETKNHRLLLRF 276
D K++ +KVFK + ++ +++R+ L +
Sbjct: 43 DGKESGIEKVFKSIFPIQDEHNRITLEY 70
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 24.3 bits (51), Expect = 4.6
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 10/60 (16%)
Query: 175 LKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKEDPNTIY 234
L+ + +E AI T+ + NP+ P+ +E+PKEQ+K + P ++Y
Sbjct: 42 LEGAQTKEQAIAQNTQNTQKIYENPLTH------PQTKEQPKEQNKSDTAT----PQSVY 91
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 24.3 bits (51), Expect = 4.6
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 49 AEICKATKIASKNIHSILEKRYESLSRVHARGFIQ-------------ILEREYKIDLSA 95
++ K+ + +K +L K + R H + LE + + L +
Sbjct: 54 SKFIKSNLVGTKTASPVLIKNIGQMKRSHLENALNYALENSETAYNEMFLECDKQFILES 113
Query: 96 WMKEFDKACTFKEGVSEEQNQETDPEEKTKNPL 128
W+ +FD + E + + + P+E+T L
Sbjct: 114 WLNDFDLTKDYNETMHLVFSIKDKPDEETMQGL 146
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 23.9 bits (50), Expect = 6.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 178 ERGQESAIKSGTKKSFFNKANPIEENKPEPTPK 210
E G E+ + GT+ A E+ KP+P PK
Sbjct: 34 EAGFETGLLQGTQTQEQTIATTQEKPKPKPKPK 66
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 23.9 bits (50), Expect = 6.0
Identities = 21/69 (30%), Positives = 29/69 (41%), Gaps = 10/69 (14%)
Query: 247 DLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQDYNDSKTRRFLYEPNK 306
D D+KK F K FK L + + L+ F L LKN S+ + NK
Sbjct: 33 DFDKKKQKFLKDFKAGELLYQSHFKPLVEFIAEEL-LKN---------SRAKIIQSNCNK 82
Query: 307 GLTLINEAQ 315
L ++ E Q
Sbjct: 83 ALKVVEELQ 91
>ref|NP_223066.1| putative [Helicobacter pylori J99]
Length = 167
Score = 23.9 bits (50), Expect = 6.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 16 VQNISKDISGATLEELSLKNLDK-NLQILKEVG 47
++NI K++ A LE L L+NL K N+ + G
Sbjct: 88 IKNIRKNMLYAYLEALGLENLTKTNIDVFDSKG 120
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 23.9 bits (50), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 180 GQESAIKSGTKKSFFNKANPIEENKP 205
GQE A+K+ K NKA + NKP
Sbjct: 572 GQEKALKAIAKAIKRNKAGLSDSNKP 597
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.5 bits (49), Expect = 7.8
Identities = 50/250 (20%), Positives = 98/250 (39%), Gaps = 37/250 (14%)
Query: 4 NKKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQI---LKEVGVAEICKATKIASK 60
N + +E L ++ + I + S LE L N I L +A I K + S
Sbjct: 110 NPEMVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHILKRHGVNSV 169
Query: 61 NIHSILEK-RYESLSRV-----HARGFIQILEREYKIDLSAWMKEFDKACTFKEGVSEEQ 114
N+ + YE ++ +A ++ L+ E K +SA+ + A ++ ++++
Sbjct: 170 NVKNGESPITYEDIANYRYIVNNADAILRTLDNEDKEVISAFKQINGYAVVVEQAINKKN 229
Query: 115 N------QETDPEEKTKNPLKVEIDYSINQANIKLSKGLSKWKPFVLVLGVVVIVLAVVI 168
+++ + K N K A+ K++ GLS L + +
Sbjct: 230 ELVLKTMYKSNGDYKDNNAYKKFSSTLTLNADAKVNHGLSSHSGATENLTQKPLTSQEDL 289
Query: 169 IQNSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEE----------KPKEQ 218
++++ +L E + + + +P+E E KLE K KEQ
Sbjct: 290 LKDTENLNETTPKPTHL------------SPLELANAEKLAKLESEQLQSEQEFLKAKEQ 337
Query: 219 DKQEKEAIKE 228
+ + KEA+K+
Sbjct: 338 ELKRKEALKK 347
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 23.5 bits (49), Expect = 7.8
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 160 VVIVLAVVIIQNSSSLK--EERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKE 217
V++ + VV + S ++ E R QES++ ++ +K +E K + EEK +
Sbjct: 11 VLLFIGVVYAEPDSKVEALEGRKQESSLDKKIRQELKSKELKNKELKNKDLKNKEEKKET 70
Query: 218 QDKQEKEA 225
+ K++ A
Sbjct: 71 KAKRKPRA 78
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 23.5 bits (49), Expect = 7.8
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 198 NPIEENKPEPTPKLEEKPKEQDKQEKEAIKED-----PNTIYIIPKKDIWVEVIDLDEKK 252
N +E+ K +L +K + D K +K++ P + K+ ++ I LD+ K
Sbjct: 137 NALEKVKTRMLAQLLQKESDFDYLAKLTLKQELFANTPLANAALGTKES-LQKIKLDDLK 195
Query: 253 NSFQKVFKKN 262
F KVF+ N
Sbjct: 196 QQFAKVFELN 205
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 23.5 bits (49), Expect = 7.8
Identities = 13/42 (30%), Positives = 21/42 (49%)
Query: 4 NKKSLENLDLSDVQNISKDISGATLEELSLKNLDKNLQILKE 45
N L+N + ++ + K S + L L+ LD+ L LKE
Sbjct: 308 NAHYLKNQSVQELLKLLKPFSFSDLSHLNPAQLDRLLDALKE 349
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 23.5 bits (49), Expect = 7.8
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 204 KPEPTPKLEEKPKEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLD---EKKNSFQKVFK 260
K P E P Q+ EK+AI+ D + ++ ++ L EK KV
Sbjct: 34 KTNPNSASLETPNPQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEESKVLI 93
Query: 261 KNYSLETKNHRLLLRFGHGHLSLKN 285
+N KN + F G ++N
Sbjct: 94 EN----AKNDGYKIGFKEGEEKMRN 114
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.5 bits (49), Expect = 7.8
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 171 NSSSLKEERGQESAIKSGTKKSFFNKANPIEENKPEPTPKLEEKPKEQDKQEKEAIKE 228
N+++LKE +E ++ +KK E KP+ +L +K K+Q ++E K+
Sbjct: 231 NANTLKETASKEP--ETSSKK----------EKKPKKKRRLSKKEKQQQALQQEFEKQ 276
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.310 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,701
Number of Sequences: 1491
Number of extensions: 19815
Number of successful extensions: 150
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 77
length of query: 321
length of database: 494,079
effective HSP length: 78
effective length of query: 243
effective length of database: 377,781
effective search space: 91800783
effective search space used: 91800783
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)