BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645181|ref|NP_207351.1| hypothetical protein
[Helicobacter pylori 26695]
(145 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223221.1| putative [Helicobacter pylori J99] 291 5e-81
ref|NP_223864.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 27 0.17
ref|NP_223049.1| putative [Helicobacter pylori J99] 27 0.17
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 25 0.86
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 24 1.5
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 2.5
ref|NP_223186.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 22 5.6
ref|NP_223232.1| putative Inner membrane protein [Helicobac... 22 5.6
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 22 7.3
ref|NP_223398.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 22 7.3
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 22 7.3
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 22 9.5
>ref|NP_223221.1| putative [Helicobacter pylori J99]
Length = 145
Score = 291 bits (745), Expect = 5e-81
Identities = 141/145 (97%), Positives = 142/145 (97%)
Query: 1 MVTHEKIKSRFSRNWSLRNRGRHFASASVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL 60
MV HEKIKSRFSRNWSLRNRGRHFAS+SVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL
Sbjct: 1 MVIHEKIKSRFSRNWSLRNRGRHFASSSVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFL 60
Query: 61 ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVLFIE 120
ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAV FIE
Sbjct: 61 ISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVFFIE 120
Query: 121 AGAGLLVGCVIQKIFFGKYWVDRYY 145
AGA LLVGCVIQKIFFGKYWVDRYY
Sbjct: 121 AGADLLVGCVIQKIFFGKYWVDRYY 145
>ref|NP_223864.1| putative [Helicobacter pylori J99]
Length = 130
Score = 27.7 bits (60), Expect = 0.13
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 54 HLIGWFLISFSGEFVADMAFGKKSKIFKTRFGISIVSGV 92
+LIG F+I F G A K+F FGI V+GV
Sbjct: 44 NLIGCFIIGFMGHLAA-------KKVFGDDFGIFFVTGV 75
>ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 223
Score = 27.3 bits (59), Expect = 0.17
Identities = 15/44 (34%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Query: 71 MAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWW 114
MAFG K + R + + + LL A LF V+FG +W+
Sbjct: 42 MAFGSKIMVLACRVYLESIRIIPLL-----AWLFIVYFGLASWF 80
>ref|NP_223049.1| putative [Helicobacter pylori J99]
Length = 252
Score = 27.3 bits (59), Expect = 0.17
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 54 HLIGWFLISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINW 113
+LIG+ L F +F+ + F K+ F+ I + ++ + +F W
Sbjct: 11 NLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLAETTGVIKNRMDLFDYFFPNKRKGW 70
Query: 114 W 114
W
Sbjct: 71 W 71
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 25.0 bits (53), Expect = 0.86
Identities = 26/92 (28%), Positives = 37/92 (39%), Gaps = 12/92 (13%)
Query: 24 FASASVYFFSLLVITAVNRSSAVAWLLMPEHLIG-WFLISFSGEFVADM------AFGKK 76
F + F LLV+ +A L+P+ L FL+S G + + F K
Sbjct: 224 FFGVRILSFKLLVLAC-----CIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKD 278
Query: 77 SKIFKTRFGISIVSGVSLLLGALPAHLFFVWF 108
S FK F +S + L + AH FF F
Sbjct: 279 SSFFKRSFQAIALSVLVFLNMLIVAHAFFPMF 310
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 24.3 bits (51), Expect = 1.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 100 PAHLFFVWFGFINWWAVL---FIEAGAGLLVGCVIQKIFFGKYWVDR 143
P H++ W+ F+ + VL F A GL+ V Q IFF ++DR
Sbjct: 294 PPHIYPEWY-FLWSYEVLRGFFFSADLGLMAFGVAQVIFFLLPFLDR 339
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.5 bits (49), Expect = 2.5
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 109 GFINWWAVLFIEAGAGLLVGCVIQKI 134
G ++ W ++++ AG GL +G Q +
Sbjct: 2865 GEMHLWRLMYVNAGVGLKMGLQYQDL 2890
>ref|NP_223186.1| putative [Helicobacter pylori J99]
Length = 283
Score = 22.7 bits (47), Expect = 4.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 73 FGKKSKIFKTRFGISIVSGVSLLLGA 98
F KS F +FG ++ S+L+G+
Sbjct: 162 FSNKSANFANKFGSNLAEFTSMLIGS 187
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 22.3 bits (46), Expect = 5.6
Identities = 14/38 (36%), Positives = 18/38 (46%)
Query: 42 RSSAVAWLLMPEHLIGWFLISFSGEFVADMAFGKKSKI 79
+S A L L+ F SF+ E DM GK +KI
Sbjct: 339 KSQQAASFLFALILVSPFTSSFANEGQIDMHGGKSAKI 376
>ref|NP_223232.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 349
Score = 22.3 bits (46), Expect = 5.6
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 68 VADMAFGKKSKIFKTRFGIS----IVSGVSLLLGALPAHLFFVWFGFINW 113
V + + KIF+ GI + S ++++L + +WFG W
Sbjct: 173 VLPLEMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGTMIIWFGHDGW 222
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 21.9 bits (45), Expect = 7.3
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 86 ISIVSGVSLLLGALPAHLFFVWF 108
+ +V + LL G + +FF+W+
Sbjct: 28 MEVVGFLGLLAGLMSIFVFFIWW 50
>ref|NP_223398.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 381
Score = 21.9 bits (45), Expect = 7.3
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 80 FKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVLFIEAGAGLLV 127
F RFG + + L HLFF F + W + + G +L+
Sbjct: 259 FVERFGFLGAILLFAIYIGLSLHLFFYLFESNSDWFLKIVALGISILI 306
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 21.9 bits (45), Expect = 7.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 91 GVSLLLGALPAHLF 104
GV LLLGAL H F
Sbjct: 174 GVLLLLGALDFHFF 187
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 21.6 bits (44), Expect = 9.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 78 KIFKTRFGISIVSGVSLL 95
+I KT+ G+S+VS V L+
Sbjct: 332 QIIKTKPGVSLVSSVFLM 349
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.144 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,089
Number of Sequences: 1491
Number of extensions: 5052
Number of successful extensions: 29
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 14
length of query: 145
length of database: 494,079
effective HSP length: 70
effective length of query: 75
effective length of database: 389,709
effective search space: 29228175
effective search space used: 29228175
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 44 (21.6 bits)