BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645184|ref|NP_207354.1| acyl carrier protein (acpP)
[Helicobacter pylori 26695]
(78 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori ... 145 1e-37
ref|NP_223692.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_224021.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 23 1.4
ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99] 22 1.9
ref|NP_223839.1| 50S RIBOSOMAL PROTEIN L7/L12 [Helicobacter... 22 1.9
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 22 1.9
ref|NP_224174.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 22 2.5
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 22 2.5
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 3.2
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 22 3.2
ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-... 21 4.2
ref|NP_224114.1| putative component of cation transport for... 20 7.2
ref|NP_223208.1| cag island protein [Helicobacter pylori J99] 20 7.2
ref|NP_222977.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223621.1| putative cation efflux system protein [Hel... 20 9.4
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 20 9.4
>ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 78
Score = 145 bits (366), Expect = 1e-37
Identities = 74/78 (94%), Positives = 76/78 (96%)
Query: 1 MALFEDIQAVIAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAE 60
MALFEDIQAVIAEQLNVDA QVTPEAEFVKDLGADSLDVVELIMALEEKF +EIPDEQAE
Sbjct: 1 MALFEDIQAVIAEQLNVDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFNIEIPDEQAE 60
Query: 61 KIINVGDVVKYIEDNKLA 78
KI+NVGDVVKYIEDNKLA
Sbjct: 61 KIVNVGDVVKYIEDNKLA 78
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 24.6 bits (52), Expect = 0.38
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 53 EIPDEQAEKIINVGDVVKYIEDNKL 77
E+P E+ +++N+G + I NKL
Sbjct: 51 ELPKERILELVNIGKIKSKISHNKL 75
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 23.1 bits (48), Expect = 1.1
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 5/51 (9%)
Query: 28 FVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINVGDVVKYIEDNKLA 78
F DLGAD + +EL L E+F I + + V +I+ NK+A
Sbjct: 110 FSADLGADLVSNIELQKILLERFEQCIITDHHKSF-----EVDWIDKNKIA 155
>ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 343
Score = 22.7 bits (47), Expect = 1.4
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 29 VKDLGADSLDVVELIMALEEKFGVEIPDEQ 58
+KD+ ++E++ +L+EK ++ +E+
Sbjct: 310 IKDVDVAQRKIIEIVQSLQEKGVIQTGEEE 339
>ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 22.3 bits (46), Expect = 1.9
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 45 ALEEKFGVEIPDEQAEK 61
AL+EKFG E+ + A+K
Sbjct: 158 ALQEKFGCEVLELDAQK 174
>ref|NP_223839.1| 50S RIBOSOMAL PROTEIN L7/L12 [Helicobacter pylori J99]
Length = 125
Score = 22.3 bits (46), Expect = 1.9
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 37 LDVVELIMALEEKFGV 52
L++ EL+ EEKFGV
Sbjct: 18 LELSELVKMFEEKFGV 33
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 36 SLDVVELI----MALEEKFGVEIPDEQAEKI 62
SLD +E + L+E+FG ++ E+++KI
Sbjct: 82 SLDFLERFTQKALELKEQFGSQVKSERSQKI 112
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 21.9 bits (45), Expect = 2.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 27 EFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEK 61
EF+ DL E I LEE GV P+E+ E+
Sbjct: 85 EFLDDLQLSG----ERINDLEEVVGVNRPEEEKEE 115
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 21.9 bits (45), Expect = 2.5
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 13/65 (20%)
Query: 11 IAEQLNVDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINVGDVVK 70
+ E LNV+ VQ KDL A S++ + + K G + D+Q I N +++K
Sbjct: 317 LGETLNVECVQN-------KDLLA-SVNPNQFV-----KIGFKAEDDQQNAIKNAQNLLK 363
Query: 71 YIEDN 75
+DN
Sbjct: 364 PSQDN 368
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 21.9 bits (45), Expect = 2.5
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 27 EFVKDLGADSLDVVELIMALEEKFGVEIPDEQ 58
E D+G V++ I GVE+P+E+
Sbjct: 106 EIEADIGLKPTIVLDKIQECVPSVGVEVPNEE 137
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 21.6 bits (44), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (50%)
Query: 17 VDAVQVTPEAEFVKDLGADSLDVVELIMA 45
++A Q T EAE +KD G + MA
Sbjct: 468 LNAKQHTKEAEIIKDAGLKGAVTIATNMA 496
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 47 EEKFGVEIPDEQAEKIINVGDVVKYIED 74
E K E DE+ +++ +GD+ K +ED
Sbjct: 488 EVKSMFEEMDEEEDELNKLGDLRKKVED 515
>ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 21.2 bits (43), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 24 PEAEFVKDLGADSLDVV 40
PEA F+ +LG D L ++
Sbjct: 184 PEAPFLANLGMDFLSIL 200
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 35 DSLDVVELIMALEE 48
DS++++EL ALEE
Sbjct: 63 DSMNILELEQALEE 76
>ref|NP_223208.1| cag island protein [Helicobacter pylori J99]
Length = 142
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/37 (18%), Positives = 20/37 (53%)
Query: 29 VKDLGADSLDVVELIMALEEKFGVEIPDEQAEKIINV 65
+KD+ + + + + + ++ +EIP E E+ + +
Sbjct: 33 IKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAI 69
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 38 DVVELIMALEEKFGVEIPDEQAEKI 62
++ E I +LEE G++ + +EKI
Sbjct: 215 EIQEDIDSLEEAIGLDSSKDNSEKI 239
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 17 VDAVQVTPEAEFVKDLGADSLDVVELIMALEEKFGVEI 54
V+ + VTP E + D+G S + + + + E V++
Sbjct: 706 VNYLYVTPNKESMADVGITSNEFSKFLKSALEGLVVDV 743
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 1 MALFEDIQAVIAEQLN 16
M L +D+Q V+ Q+N
Sbjct: 402 MRLSDDVQGVLVSQVN 417
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.136 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,165
Number of Sequences: 1491
Number of extensions: 2475
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 78
length of database: 494,079
effective HSP length: 54
effective length of query: 24
effective length of database: 413,565
effective search space: 9925560
effective search space used: 9925560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)