BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645185|ref|NP_207355.1| hypothetical protein
[Helicobacter pylori 26695]
         (26 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223225.1|  putative [Helicobacter pylori J99]               52  2e-09
ref|NP_224186.1|  putative ROD SHAPE-DETERMINING PROTEIN [He...    21  6.5
ref|NP_223556.1|  putative [Helicobacter pylori J99]               21  6.5
ref|NP_223064.1|  putative [Helicobacter pylori J99]               21  6.5

>ref|NP_223225.1| putative [Helicobacter pylori J99]
          Length = 26

 Score = 52.4 bits (124), Expect = 2e-09
 Identities = 26/26 (100%), Positives = 26/26 (100%)

Query: 1  MGIIYLILFLIVIYLLYRILDVLEQK 26
          MGIIYLILFLIVIYLLYRILDVLEQK
Sbjct: 1  MGIIYLILFLIVIYLLYRILDVLEQK 26



>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
          Length = 388

 Score = 20.8 bits (42), Expect = 6.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 4   IYLILFLIVIYLLYRILDVLEQ 25
           +  ILF ++I L++RI + L++
Sbjct: 302 VCFILFSVMIVLIFRIANRLKE 323



>ref|NP_223556.1| putative [Helicobacter pylori J99]
          Length = 42

 Score = 20.8 bits (42), Expect = 6.5
 Identities = 6/23 (26%), Positives = 18/23 (78%)

Query: 1  MGIIYLILFLIVIYLLYRILDVL 23
          + + YL+L +I++ +++RI+ ++
Sbjct: 7  INVWYLLLTIILLIIIWRIIKLV 29



>ref|NP_223064.1| putative [Helicobacter pylori J99]
          Length = 189

 Score = 20.8 bits (42), Expect = 6.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 4  IYLILFLIVIYLLYRIL 20
          I+++LF + IYL + +L
Sbjct: 8  IFVVLFSVGIYLTWHVL 24



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.346    0.169    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,951
Number of Sequences: 1491
Number of extensions: 421
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 26
length of database: 494,079
effective HSP length: 2
effective length of query: 24
effective length of database: 491,097
effective search space: 11786328
effective search space used: 11786328
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 41 (20.4 bits)