BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645187|ref|NP_207357.1| ribosomal protein S21
(rps21) [Helicobacter pylori 26695]
(70 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223227.1| 30S RIBOSOMAL PROTEIN S21 [Helicobacter py... 139 1e-35
ref|NP_223089.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 22 2.5
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 22 3.3
ref|NP_223897.1| putative [Helicobacter pylori J99] 21 4.3
ref|NP_224149.1| putative [Helicobacter pylori J99] 20 7.4
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 20 7.4
ref|NP_224073.1| putative motility protein [Helicobacter py... 20 7.4
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 20 7.4
ref|NP_223860.1| putative [Helicobacter pylori J99] 20 7.4
ref|NP_222840.1| putative [Helicobacter pylori J99] 20 7.4
ref|NP_223655.1| putative [Helicobacter pylori J99] 20 9.6
ref|NP_223553.1| Hydrogenase expression/formation protein [... 20 9.6
>ref|NP_223227.1| 30S RIBOSOMAL PROTEIN S21 [Helicobacter pylori J99]
Length = 70
Score = 139 bits (350), Expect = 1e-35
Identities = 69/70 (98%), Positives = 70/70 (99%)
Query: 1 MPGIKVREGDAFDEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISAKKKVLKRL 60
MPGIKVREGDAFDEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISAKK+VLKRL
Sbjct: 1 MPGIKVREGDAFDEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISAKKEVLKRL 60
Query: 61 YMLRRYESRL 70
YMLRRYESRL
Sbjct: 61 YMLRRYESRL 70
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 22.3 bits (46), Expect = 1.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 8 EGDAFDEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQKISAKKK 55
E DE K+Q V + + FE + +R KIS+KK+
Sbjct: 27 ENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEEYLERTYPKISSKKR 74
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 21.9 bits (45), Expect = 2.5
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 36 RFFESKTEKRKKQKISAKKKVLKRLYML 63
R + K E + + KK+++ RLY++
Sbjct: 577 RLLKQKIEDNNQLDMEEKKEIMGRLYVM 604
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 21.6 bits (44), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 21 KQTDRNLVVTECRARRFFESKTEKRKKQKIS 51
K+ D NL+V++ +FES K K S
Sbjct: 312 KEDDANLLVSDPLLAEYFESMLNLGVKAKTS 342
>ref|NP_223897.1| putative [Helicobacter pylori J99]
Length = 152
Score = 21.2 bits (43), Expect = 4.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 40 SKTEKRKKQKISAKKKVLKRLYMLRRYES 68
+K K+ K+K A + LK LY+ R ++
Sbjct: 3 TKKTKKNKEKKQALENPLKGLYLSLRLKA 31
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 20.4 bits (41), Expect = 7.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 17 RRFKKQTDRNLVVTE-CRARRFFESKTEKRKKQKISAKKKVL 57
+ FK T ++ + CR + EKRK++ I + VL
Sbjct: 250 KTFKVMTCYDMTKNDVCRYTEWMPKNLEKRKEELIKRIESVL 291
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 20.4 bits (41), Expect = 7.4
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 35 RRFFESKTEKRKKQKISAKKKVLKRLYM 62
+ FF K EK+ KI ++ +K+ ++
Sbjct: 566 QNFFNEKDEKKALNKIKEFEEEVKKRFI 593
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 20.4 bits (41), Expect = 7.4
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 13 DEAYRRFKKQTDRNLVVTECRARRFFESKTEKRKKQK 49
D A+R +++ D +L + E+K +++K+++
Sbjct: 54 DSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKR 90
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 20.4 bits (41), Expect = 7.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 13 DEAYRRFKKQTDR 25
+EA++ KKQ DR
Sbjct: 265 EEAFKEIKKQIDR 277
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 20.4 bits (41), Expect = 7.4
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 31 ECRARRFFESKTEKRKKQKISAKKKVLKR 59
EC F ++ KR K ++ K+LK+
Sbjct: 50 ECLTLYAFSTENWKRPKSEVDFLMKMLKK 78
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 20.4 bits (41), Expect = 7.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 40 SKTEKRKKQKISAKKKVLKRLYMLRRYESRL 70
SK EK+ K+K KK ++ + + +E ++
Sbjct: 247 SKKEKKPKKKRRLSKKEKQQQALQQEFEKQI 277
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 20.0 bits (40), Expect = 9.6
Identities = 10/38 (26%), Positives = 16/38 (41%)
Query: 7 REGDAFDEAYRRFKKQTDRNLVVTECRARRFFESKTEK 44
+ D F E KQ + + RAR +F++ K
Sbjct: 366 QNNDGFGEKENHIDKQLTQKRINERERARIYFQNPNVK 403
>ref|NP_223553.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 370
Score = 20.0 bits (40), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 38 FESKTEKRKKQKISAKKKVLKRLY 61
FE+ T ++AKK+ LK L+
Sbjct: 146 FETTTPMTASVLLNAKKEKLKNLF 169
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,287
Number of Sequences: 1491
Number of extensions: 2007
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 70
length of database: 494,079
effective HSP length: 46
effective length of query: 24
effective length of database: 425,493
effective search space: 10211832
effective search space used: 10211832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)