BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644688|ref|NP_206858.1| hypothetical protein
[Helicobacter pylori 26695]
(69 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222771.1| putative [Helicobacter pylori J99] 139 1e-35
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 27 0.061
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 27 0.061
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 25 0.39
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 23 1.5
ref|NP_223493.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 22 3.3
ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacte... 21 4.3
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 21 5.7
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 20 7.4
ref|NP_222810.1| putative [Helicobacter pylori J99] 20 7.4
ref|NP_222758.1| DNA transformation compentancy [Helicobact... 20 9.7
>ref|NP_222771.1| putative [Helicobacter pylori J99]
Length = 69
Score = 139 bits (349), Expect = 1e-35
Identities = 64/69 (92%), Positives = 66/69 (94%)
Query: 1 MKTIKNGMMIGTLGALLLSGCSSFDAQRFACIPKDHSLKDASTKKEVQYTPKGFFDPYSS 60
MKTIKNG+MIGTLGALLLSGCSSFDAQRFAC+PKDHS KDASTKKE QY PKGFFDPYSS
Sbjct: 1 MKTIKNGIMIGTLGALLLSGCSSFDAQRFACLPKDHSSKDASTKKEAQYIPKGFFDPYSS 60
Query: 61 NLNHWDSTF 69
NLNHWDSTF
Sbjct: 61 NLNHWDSTF 69
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 27.3 bits (59), Expect = 0.061
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 32 IPKDHSLKDASTKKEVQYTPKGFFDPYSSNLNHWD 66
IP SL++A +KK Y+P+G Y N N ++
Sbjct: 463 IPNAQSLQNAVSKKNNPYSPQGIDTNYYLNQNSYN 497
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 27.3 bits (59), Expect = 0.061
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 32 IPKDHSLKDASTKKEVQYTPKGFFDPYSSNLNHWD 66
IP SL++A +KK Y+P+G Y N N ++
Sbjct: 504 IPNAQSLQNAVSKKNNPYSPQGIDTNYYLNQNSYN 538
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 24.6 bits (52), Expect = 0.39
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 12 TLGALLLSGCSSFDAQRFACIPKDHSLKD-----ASTKKEVQYTPKGFFDPYSSNLNHWD 66
T A+ LS S P DH +KD + KK + KGF + ++ +
Sbjct: 88 TANAIALSALMSDKEDLLIVTPSDHLIKDFQAYENAIKKAINLAQKGFLVTFGISIEKPN 147
Query: 67 STF 69
+ F
Sbjct: 148 TEF 150
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 22.7 bits (47), Expect = 1.5
Identities = 11/30 (36%), Positives = 16/30 (52%), Gaps = 1/30 (3%)
Query: 36 HSLKDASTKKEVQYTPKGFFDPYSSNLNHW 65
HSL +T+ + P FF+ +N NHW
Sbjct: 250 HSLS-GNTETFLAIQPFDFFEEKGNNGNHW 278
>ref|NP_223493.1| putative [Helicobacter pylori J99]
Length = 201
Score = 22.3 bits (46), Expect = 1.9
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 6 NGMMIGTLGALLLSGCSSFDAQ--RFACIPKDHSLKDASTKKEVQYTPKGFFDPYSS 60
N +++ TL L+SGCS F + IP + A +TP+ P S
Sbjct: 11 NSLLVATL---LISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQPLPS 64
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 21.6 bits (44), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 35 DHSLKDASTKKEVQYTPKGFF 55
DH LKD K++++ KG F
Sbjct: 491 DHLLKDDKLKEKLEKGLKGLF 511
>ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacter pylori J99]
Length = 360
Score = 21.2 bits (43), Expect = 4.3
Identities = 8/23 (34%), Positives = 12/23 (51%)
Query: 32 IPKDHSLKDASTKKEVQYTPKGF 54
+PKD+ KE Y+P+ F
Sbjct: 24 LPKDYRFIGVFESKEALYSPREF 46
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 20.8 bits (42), Expect = 5.7
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 32 IPKDHSLKDASTKKEVQYTPKGFFDPYSSNLN 63
+P SL++ +KK +P+G D Y + N
Sbjct: 453 LPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSN 484
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 20.4 bits (41), Expect = 7.4
Identities = 6/14 (42%), Positives = 10/14 (70%)
Query: 52 KGFFDPYSSNLNHW 65
+G + PY+SN + W
Sbjct: 32 QGRYGPYNSNYSDW 45
>ref|NP_222810.1| putative [Helicobacter pylori J99]
Length = 237
Score = 20.4 bits (41), Expect = 7.4
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 15 ALLLSGCSSF 24
ALL+SGC+S+
Sbjct: 10 ALLISGCASY 19
>ref|NP_222758.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 376
Score = 20.0 bits (40), Expect = 9.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 1 MKTIKNGMMIGTLGAL 16
+ T+ NG++IG AL
Sbjct: 282 LSTLTNGLLIGITSAL 297
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,531
Number of Sequences: 1491
Number of extensions: 2579
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 69
length of database: 494,079
effective HSP length: 45
effective length of query: 24
effective length of database: 426,984
effective search space: 10247616
effective search space used: 10247616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)