BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645196|ref|NP_207366.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(192 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223236.1| putative [Helicobacter pylori J99] 381 e-108
ref|NP_223806.1| putative [Helicobacter pylori J99] 111 1e-26
ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helico... 30 0.032
ref|NP_224109.1| putative [Helicobacter pylori J99] 28 0.21
ref|NP_222934.1| putative [Helicobacter pylori J99] 27 0.35
ref|NP_223144.1| Molybdate ABC transporter, permease [Helic... 27 0.46
ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99] 26 0.79
ref|NP_223956.1| 50S RIBOSOMAL PROTEIN L4 [Helicobacter pyl... 25 1.3
ref|NP_223039.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_224095.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicob... 24 2.3
ref|NP_223864.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [... 23 5.1
ref|NP_224017.1| putative ribonuclease N [Helicobacter pylo... 22 8.7
>ref|NP_223236.1| putative [Helicobacter pylori J99]
Length = 192
Score = 381 bits (979), Expect = e-108
Identities = 188/192 (97%), Positives = 189/192 (97%)
Query: 1 MEEYIIDLWNQHAATWGYLILFGWSILEGEIGLILAGIASYTGHMHLGLAILVAGIGGFV 60
MEEYIIDLWNQHAA+WGYLILFGWSILEGEIGLILAGIA YTGHMHLGLAILVAGIGGFV
Sbjct: 1 MEEYIIDLWNQHAASWGYLILFGWSILEGEIGLILAGIARYTGHMHLGLAILVAGIGGFV 60
Query: 61 GDQIYFYIGRTNKAYIQKKLEKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIG 120
GDQIYFYIGRTNKAYIQKKLEKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIG
Sbjct: 61 GDQIYFYIGRTNKAYIQKKLEKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIG 120
Query: 121 LTRYSALKFAIINLISAMVWASITIILAWYLGEELLHALGWLKKHPYALILLLVSFLALV 180
LTRYSALKFAIINLISAMVWASITIILAW LGEELLHAL WLKKHPYALILLLVSFLALV
Sbjct: 121 LTRYSALKFAIINLISAMVWASITIILAWCLGEELLHALEWLKKHPYALILLLVSFLALV 180
Query: 181 LWYFQYYSKKNR 192
LWYFQYYSKKNR
Sbjct: 181 LWYFQYYSKKNR 192
>ref|NP_223806.1| putative [Helicobacter pylori J99]
Length = 193
Score = 111 bits (277), Expect = 1e-26
Identities = 60/183 (32%), Positives = 104/183 (56%), Gaps = 15/183 (8%)
Query: 16 WGYLILFGWSILEGEIGLILAGIASYTGH-MHLGLAILVAGIGGFVGDQIYFYIGRTNKA 74
WGYLILF +S+ G +G+++A I S T H + + + ILVA +G +G R K
Sbjct: 15 WGYLILFLYSLGGGYVGIVIASILSATTHALDIKITILVAFLGNLIGSGALVIFARYQKR 74
Query: 75 YIQKKLEKQRRKLALAHLLLQKHGWFIIFIQRYMYGMRTIIPISIGLTRYSALKFAIINL 134
K +K RRKLALA L ++++ +IF+ +Y+YG+++++P++IG ++Y KF +N+
Sbjct: 75 EFLKYFQKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAIGFSKYPLKKFLWLNV 134
Query: 135 ISAMVWASITIILAWYLGEELLHALGWLK------KHPYALILLLVSFLALVLWY-FQYY 187
S+ +WA I +G A W+K H + ++ +AL++W+ + Y
Sbjct: 135 FSSFLWALI-------VGSVSFQASDWVKTLYERLSHYTSFFVISFVLIALLIWFLLKRY 187
Query: 188 SKK 190
S+K
Sbjct: 188 SRK 190
>ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helicobacter pylori J99]
Length = 433
Score = 30.4 bits (67), Expect = 0.032
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 60 VGDQIYFYIGRTNKAYIQKKLEKQRRKLALAHLLLQKH 97
+ D ++G T+K K+LEK K+ LA + L+KH
Sbjct: 267 INDYYKVFLGETDKDLYVKRLEKITPKIYLASVFLEKH 304
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 27.7 bits (60), Expect = 0.21
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 118 SIGLTRYS-----ALKFAIINLISAMVWASITIILAWYLGEELLHALGWLKKHPYALILL 172
S L RY LKF II L+ VW + + + L+ +G L P+ +
Sbjct: 288 SPSLARYENLALLGLKFIIITLV---VWGLFFALGKFSISGILIPEIGVLS--PFFV--- 339
Query: 173 LVSFLALVLWYFQYYSKK 190
FLAL LWYF+ +K+
Sbjct: 340 ---FLALSLWYFKKLNKR 354
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 26.9 bits (58), Expect = 0.35
Identities = 13/32 (40%), Positives = 18/32 (55%)
Query: 25 SILEGEIGLILAGIASYTGHMHLGLAILVAGI 56
S G + LIL G+ G + G+A L+AGI
Sbjct: 67 SAAAGSVALILVGVVKNYGLEYAGVATLMAGI 98
>ref|NP_223144.1| Molybdate ABC transporter, permease [Helicobacter pylori J99]
Length = 224
Score = 26.6 bits (57), Expect = 0.46
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 158 ALGWLKKHPYALILLLVSFLALVLWYF 184
AL + K H YAL L L+SF L + F
Sbjct: 189 ALNYSKAHQYALTLTLISFSLLFVTLF 215
>ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99]
Length = 538
Score = 25.8 bits (55), Expect = 0.79
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 5/48 (10%)
Query: 48 GLAILVAGIGGFVGD-QIYFYIGRTNKAYIQKKLEKQRRKLALAHLLL 94
GL L+ +GG VGD + FY+ +A Q KLE K+ H+ L
Sbjct: 134 GLDFLIVEVGGTVGDMEGMFYL----EAIRQLKLELGNEKVINVHVTL 177
>ref|NP_223956.1| 50S RIBOSOMAL PROTEIN L4 [Helicobacter pylori J99]
Length = 215
Score = 25.0 bits (53), Expect = 1.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 69 GRTNKAYIQKKLEKQRRKLALAHLLLQK 96
G TNK K+ K++++LAL + L +K
Sbjct: 89 GATNKRNYNLKINKKQKRLALEYALEEK 116
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 25.0 bits (53), Expect = 1.3
Identities = 8/37 (21%), Positives = 22/37 (58%)
Query: 113 TIIPISIGLTRYSALKFAIINLISAMVWASITIILAW 149
T++ I + + YS ++ +++ S+ +W I +++ W
Sbjct: 51 TLLVILVDIWVYSDVRQFLLDTSSSFIWLLIALLIKW 87
>ref|NP_224095.1| putative [Helicobacter pylori J99]
Length = 148
Score = 24.6 bits (52), Expect = 1.8
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 119 IGLTRYSALKFAIINLISAMVWASITIILAWYLGEELLHALGWLKKHPYALILLLVSFLA 178
+G+ + K AM + IT IL + E+ + GWL ++LLL+
Sbjct: 46 VGVVQIQEKKLYSFIASPAMGFTLITGILMLLIAPEMFKSGGWLHAKLALVVLLLI---- 101
Query: 179 LVLWYFQYYSKK 190
+ +Y KK
Sbjct: 102 -----YHFYCKK 108
>ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 24.3 bits (51), Expect = 2.3
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 2/62 (3%)
Query: 129 FAIINLISAMVWASITIILAWYLGEELLHALGWLKKHPYALILLLVSFLALVLWYFQYYS 188
+ +I L S MV A I W L + L + L + + ALILL + WYF +S
Sbjct: 391 YRLIFLASVMVGAMAKIDFVWNLAD-LSNGLMAIP-NLIALILLHKVVYSETRWYFSKHS 448
Query: 189 KK 190
K
Sbjct: 449 NK 450
>ref|NP_223864.1| putative [Helicobacter pylori J99]
Length = 130
Score = 23.5 bits (49), Expect = 3.9
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 47 LGLAILVAGIGGFVGDQIYFYIGR 70
+ L L A +GG +G + +++G+
Sbjct: 1 MNLVFLWAALGGAIGSSLRYFVGK 24
>ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [Helicobacter pylori
J99]
Length = 329
Score = 23.1 bits (48), Expect = 5.1
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 51 ILVAGIGGFVGDQIYFY 67
IL+ G GFVG + FY
Sbjct: 13 ILITGGAGFVGSNLAFY 29
>ref|NP_224017.1| putative ribonuclease N [Helicobacter pylori J99]
Length = 292
Score = 22.3 bits (46), Expect = 8.7
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 155 LLHALGWLKKHPYALILLLVSFLALVLWYF 184
LLH L W+ + + LIL + + YF
Sbjct: 179 LLHVLRWIGTYAFFLILFTIPTNKVFKHYF 208
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.146 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,455
Number of Sequences: 1491
Number of extensions: 7979
Number of successful extensions: 34
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 14
length of query: 192
length of database: 494,079
effective HSP length: 73
effective length of query: 119
effective length of database: 385,236
effective search space: 45843084
effective search space used: 45843084
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)