BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645197|ref|NP_207367.1| adenine
phosphoribosyltransferase (apt) [Helicobacter pylori 26695]
(179 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223237.1| ADENINE PHOSPHORIBOSYLTRANSFERASE [Helicob... 341 8e-96
ref|NP_224084.1| putative [Helicobacter pylori J99] 32 0.010
ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicob... 30 0.029
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 1.2
ref|NP_223855.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223809.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_222928.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 2.7
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 24 2.7
ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE... 23 4.6
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 23 4.6
ref|NP_222849.1| L-lactate permease [Helicobacter pylori J99] 23 4.6
ref|NP_223618.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_223512.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 6.0
ref|NP_224003.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223397.1| PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE [H... 22 7.9
>ref|NP_223237.1| ADENINE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 179
Score = 341 bits (874), Expect = 8e-96
Identities = 174/179 (97%), Positives = 175/179 (97%)
Query: 1 MNETLKEELLQSIREVKDYPKKGILFKDITTLLNYPKLFNKLIDTLKKRYLALNIDFIVG 60
MNE LKEELLQSIREVKDYPKKGILFKDITTLLNYPKLFNKLID LKKRYLALNIDFIVG
Sbjct: 1 MNEMLKEELLQSIREVKDYPKKGILFKDITTLLNYPKLFNKLIDALKKRYLALNIDFIVG 60
Query: 61 IEARGFILGSALAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHSDAFRGIKGV 120
IEARGFILGSA AYALGVGFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHSDAFRGIKGV
Sbjct: 61 IEARGFILGSAFAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHSDAFRGIKGV 120
Query: 121 RVVLIDDLLATGGTALASLELIKALQAECIEACFLIGLKELPGIQLLEERVKTFCLLEC 179
RVVL+DDLLATGGTALASLELIKALQAECIEACFLIGLKELPGIQLLEE VKTFCLLEC
Sbjct: 121 RVVLVDDLLATGGTALASLELIKALQAECIEACFLIGLKELPGIQLLEEHVKTFCLLEC 179
>ref|NP_224084.1| putative [Helicobacter pylori J99]
Length = 191
Score = 32.0 bits (71), Expect = 0.010
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 94 LSQSYSLEYGSDSIEIHSD-----AFRGIKGVRVVLIDDLLATGGTALASLELIKALQAE 148
L + ++ Y S+E ++ FRG + + L+DD++ TG T +L+ +K L
Sbjct: 120 LRANNAVSYAGKSLEFRANNPRNFTFRGDESLDYFLLDDIITTGTTLKEALKYLKTLN-- 177
Query: 149 CIEACFLIGL 158
I+A F I L
Sbjct: 178 -IKAHFAIAL 186
>ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 201
Score = 30.4 bits (67), Expect = 0.029
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 32 LLNYPKLFNKLIDTLKKRYLA--LNIDFIVGIEARGFILGSALAYALGVGFVPVRKKGKL 89
+L PKL +L L K+ LNI+ + G + G LA ALGV F+ +
Sbjct: 35 VLEDPKLAEQLALELAKQIQEAHLNIECVCSPAIGGILAGYELARALGVRFIFTER---- 90
Query: 90 PAHTLSQSYSLEYGSDSIEIHSDAFRGIKGVRVVLIDDLLATGGTALASLELIKALQAEC 149
+ + +L G F K ++++ +D++ TG +A+ ++++ A+
Sbjct: 91 ----VDNTMTLRRG----------FEVKKNEKILVCEDIITTGKSAMECAKVLEEKGAQI 136
Query: 150 I 150
+
Sbjct: 137 V 137
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 25.0 bits (53), Expect = 1.2
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 6/48 (12%)
Query: 2 NETLKEELLQSIREVKDYPKKGI-----LFKDITTLLNYPKLFNKLID 44
N LK L+Q +E K Y KK LF++I L N + FN +ID
Sbjct: 421 NGDLKSALIQPNQEAKIYTKKKEITSMGLFEEIFALENSSR-FNSVID 467
>ref|NP_223855.1| putative [Helicobacter pylori J99]
Length = 234
Score = 24.6 bits (52), Expect = 1.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 33 LNYPKLFNKLIDTLKKRYLALNIDFIVGIEARGFILGSALAYALGVGF 80
+N NKLI+ + R++ L ++ + L +ALA G +
Sbjct: 17 VNEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLANALAQKFGATY 64
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 24.6 bits (52), Expect = 1.6
Identities = 11/21 (52%), Positives = 16/21 (75%)
Query: 5 LKEELLQSIREVKDYPKKGIL 25
LKE++ S++E+KD PK IL
Sbjct: 196 LKEQVKGSLKELKDNPKLKIL 216
>ref|NP_222928.1| putative [Helicobacter pylori J99]
Length = 326
Score = 24.3 bits (51), Expect = 2.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 1 MNETLKEELLQSIREVKDYPKKGILFKDITTLLNYPKLFNKLIDTLKK 48
+ E ++ L+S+ E+ +Y K G K + K L+D LK+
Sbjct: 171 IKEVIRLNDLKSVEEITNYTKAGAFCKSCVRPGGHEKRDYYLVDILKE 218
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 23.9 bits (50), Expect = 2.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 145 LQAECIEACFLIGLKELPGIQLLEERVKTFCLL 177
++ + E C G E+ G + ++E+ K FCL+
Sbjct: 13 IEKKIYEICSHRGYFEINGNEKIQEKGKRFCLM 45
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 23.9 bits (50), Expect = 2.7
Identities = 26/77 (33%), Positives = 34/77 (43%), Gaps = 6/77 (7%)
Query: 17 KDYPKKG-----ILFKDITTLLNYPKLFNKLIDTLKKRYLALNIDFIVGIEARGFILGSA 71
KD+ +KG + D T L L +L+DT KK LALN+ E I
Sbjct: 74 KDFLEKGQYDLILNVVDSTNLERNLALSAQLLDTNKKMLLALNMWDEAKKEGIN-INTEK 132
Query: 72 LAYALGVGFVPVRKKGK 88
L+ LGV VP + K
Sbjct: 133 LSQELGVVCVPTSARSK 149
>ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE [Helicobacter pylori
J99]
Length = 257
Score = 23.1 bits (48), Expect = 4.6
Identities = 16/53 (30%), Positives = 26/53 (48%), Gaps = 3/53 (5%)
Query: 125 IDDLLATGGTALASLELIKALQAECIEACFLIGLKELPGIQLLEERVKTFCLL 177
+D +AT G+ALA L L+ + +A GL ++L++ K F L
Sbjct: 159 VDSSVATNGSALAFLSLV---ASSLKDAGIREGLNAKDSLELVKMSFKGFAKL 208
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 23.1 bits (48), Expect = 4.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 21 KKGILFKDITTLLN 34
K G++F+D TTLLN
Sbjct: 15 KFGLVFRDTTTLLN 28
>ref|NP_222849.1| L-lactate permease [Helicobacter pylori J99]
Length = 549
Score = 23.1 bits (48), Expect = 4.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 44 DTLKKRYLALNIDFIVGIEARGFILGSALAYALGVG 79
+ LK+ L+L D + + GF GS L A+G G
Sbjct: 100 EILKESILSLTPDHRILVILIGFCFGSFLEGAIGFG 135
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 22.7 bits (47), Expect = 6.0
Identities = 11/48 (22%), Positives = 26/48 (53%), Gaps = 9/48 (18%)
Query: 7 EELLQSIREVKDYPKKGILFKDITTLLNYPKLFNKLIDTLKKRYLALN 54
+++++ +R+ K Y + +L+N P FN I+++ ++ L N
Sbjct: 117 KKVIEEVRDQKPY---------LASLINKPNEFNSEIESIMQQNLIKN 155
>ref|NP_223512.1| putative [Helicobacter pylori J99]
Length = 174
Score = 22.7 bits (47), Expect = 6.0
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 149 CIEACFLIGLKELPGIQLLEERVKTFCLL 177
C+E F+IG KE + L +VK LL
Sbjct: 121 CLERSFMIGDKESDMLAGLNAKVKNNLLL 149
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 22.7 bits (47), Expect = 6.0
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 8/73 (10%)
Query: 74 YALGVGFVPVRKKGKLPAHTLSQSYSLEY----GSDSIEIHSDAFRGIKGV--RVV--LI 125
+ LGV +P K K+P +TL + L G +I + + GV ++V L+
Sbjct: 333 FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSPKGKGAIIVPTGFISAKSGVENKIVRHLV 392
Query: 126 DDLLATGGTALAS 138
D+ L G + S
Sbjct: 393 DERLVYGVICMPS 405
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 22.3 bits (46), Expect = 7.9
Identities = 8/14 (57%), Positives = 14/14 (99%)
Query: 6 KEELLQSIREVKDY 19
KE+L+Q+I+EVK++
Sbjct: 754 KEKLIQTIQEVKEH 767
>ref|NP_223397.1| PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE [Helicobacter pylori J99]
Length = 318
Score = 22.3 bits (46), Expect = 7.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 122 VVLIDDLLATGGTALASLELIKALQAECIEA 152
V+L+DD++ T GT + +K A + A
Sbjct: 223 VILVDDMIDTAGTICKAALALKEQGATSVMA 253
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.143 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,125
Number of Sequences: 1491
Number of extensions: 8515
Number of successful extensions: 37
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 17
length of query: 179
length of database: 494,079
effective HSP length: 72
effective length of query: 107
effective length of database: 386,727
effective search space: 41379789
effective search space used: 41379789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)