BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645198|ref|NP_207368.1| hypothetical protein
[Helicobacter pylori 26695]
(110 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223238.1| putative [Helicobacter pylori J99] 211 5e-57
ref|NP_222774.1| putative [Helicobacter pylori J99] 32 0.004
ref|NP_223788.1| putative [Helicobacter pylori J99] 29 0.027
ref|NP_222772.1| putative [Helicobacter pylori J99] 26 0.30
ref|NP_223460.1| putative [Helicobacter pylori J99] 25 0.39
ref|NP_222962.1| putative [Helicobacter pylori J99] 25 0.51
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 0.67
ref|NP_223731.1| putative [Helicobacter pylori J99] 25 0.67
ref|NP_223516.1| putative [Helicobacter pylori J99] 25 0.67
ref|NP_223158.1| putative [Helicobacter pylori J99] 24 1.1
ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(... 23 1.9
ref|NP_223322.1| putative [Helicobacter pylori J99] 23 1.9
ref|NP_224173.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223639.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 23 2.5
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 23 2.5
ref|NP_223405.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_223319.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 22 4.3
ref|NP_223795.1| 30S RIBOSOMAL PROTEIN S16 [Helicobacter py... 22 4.3
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 4.3
ref|NP_224174.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 22 5.6
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 21 7.4
ref|NP_223403.1| putative abc transporter, ATP-binding prot... 21 7.4
ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 21 9.6
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 21 9.6
ref|NP_224110.1| putative [Helicobacter pylori J99] 21 9.6
ref|NP_224096.1| putative [Helicobacter pylori J99] 21 9.6
ref|NP_223656.1| putative [Helicobacter pylori J99] 21 9.6
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 211 bits (536), Expect = 5e-57
Identities = 108/110 (98%), Positives = 110/110 (99%)
Query: 1 MFTQWFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA 60
MFTQWFILTIA+VFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA
Sbjct: 1 MFTQWFILTIAVVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA 60
Query: 61 LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEALL 110
LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIK+LEQKIEALL
Sbjct: 61 LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKQLEQKIEALL 110
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 32.0 bits (71), Expect = 0.004
Identities = 25/72 (34%), Positives = 39/72 (53%), Gaps = 9/72 (12%)
Query: 40 KLTLQEAEILIQKHQLQLQ--RALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKN 97
KLT ++AE+ +K L + R L D LT+E L TE + LK+ N+E +
Sbjct: 101 KLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTE-------LTH 153
Query: 98 RIKELEQKIEAL 109
+I EL ++ +AL
Sbjct: 154 KITELTKENKAL 165
Score = 27.3 bits (59), Expect = 0.10
Identities = 20/79 (25%), Positives = 34/79 (42%), Gaps = 9/79 (11%)
Query: 40 KLTLQEAEILIQKHQLQLQ---------RALGNIDILTQEMSSLKTELKALKQRNSEYKG 90
KLT + E+ + L ++ + N + LT+E + LKTE L + N+
Sbjct: 66 KLTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLA 125
Query: 91 ESDKYKNRIKELEQKIEAL 109
D+ +EL + E L
Sbjct: 126 ARDRLTEEKRELTTEKERL 144
Score = 25.8 bits (55), Expect = 0.30
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 28 VAKRQERTNASM-KLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNS 86
+AK R A+ +LT ++ E+ +K +L+ + LT +++ L E KAL N
Sbjct: 116 LAKENTRLLAARDRLTEEKRELTTEKERLKRENTE-----LTHKITELTKENKALTTEND 170
Query: 87 EYKGESDKYKNRIKELEQK 105
+ + N LEQ+
Sbjct: 171 KLNHQVTALTNERDSLEQE 189
Score = 22.7 bits (47), Expect = 2.5
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 44 QEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELE 103
+E E I + + + L + L E S LK L+Q+N + DK EL
Sbjct: 16 EELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENTELF 75
Query: 104 QKIEAL 109
+ E+L
Sbjct: 76 AENESL 81
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 29.3 bits (64), Expect = 0.027
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 51 QKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSE----YKGESDKYKNRIKELE-QK 105
QK LQ+ L QE+ + E++ LK+ N+E K E++K N ELE +K
Sbjct: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELEREK 170
Query: 106 IEALL 110
IE L
Sbjct: 171 IEKAL 175
Score = 23.1 bits (48), Expect = 1.9
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 3/44 (6%)
Query: 66 ILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEAL 109
I ++ S + KA ++ +E + + Y++ K LEQK EAL
Sbjct: 28 IESENQSRFLAQQKAFEKEVNEKRAQ---YQSYFKNLEQKEEAL 68
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 25.8 bits (55), Expect = 0.30
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 26 KTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRN 85
+ +++ T + Q E+ K L+ ++A LT E + LKT+ L ++N
Sbjct: 125 RLATEKENLTKEKTESQKQVNELKNSKQVLENEKA-----DLTNENTKLKTDKTDLTEKN 179
Query: 86 SEYKGESDKYKNRIKELEQKIEAL 109
E + N+I L + E L
Sbjct: 180 QRLTTEKTELNNKITGLATEKERL 203
>ref|NP_223460.1| putative [Helicobacter pylori J99]
Length = 206
Score = 25.4 bits (54), Expect = 0.39
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 27 TVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNS 86
T+ K ++ S+ +T IL RA L ++ + LK L A+++++S
Sbjct: 8 TIQKSKKIKTLSLNVTPSLEVILKMPDSCPQARANA---FLKEQEAWLKKTLLAMQEKHS 64
Query: 87 EYKGESDKYKNRI 99
+ +KYKN+I
Sbjct: 65 LLRTNLEKYKNKI 77
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 25.0 bits (53), Expect = 0.51
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 65 DILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEALL 110
D+L ++ + +LK L + +K + K R+K L ++ E +L
Sbjct: 67 DLLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGIL 112
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 24.6 bits (52), Expect = 0.67
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 78 LKALKQRNSEYKGESDKYKNRIKELEQK 105
LK L++ N E E +K +N +KELE+K
Sbjct: 60 LKILQKENLE--SEKEKSQNILKELEEK 85
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 24.6 bits (52), Expect = 0.67
Identities = 12/77 (15%), Positives = 35/77 (44%)
Query: 31 RQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYKG 90
R+E L+ + +I + K Q A+G+++ + + + + K L + Y
Sbjct: 27 RKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKSYAH 86
Query: 91 ESDKYKNRIKELEQKIE 107
++K ++ + + +++
Sbjct: 87 NNEKDRSDFERFKSRLD 103
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 24.6 bits (52), Expect = 0.67
Identities = 27/114 (23%), Positives = 47/114 (40%), Gaps = 18/114 (15%)
Query: 4 QWFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGN 63
+W +L I + FI Y+G T + + ++T E+L + + LQ+ L
Sbjct: 35 KWVLLFIVVAFIAYLG------DTKLQDYKHEQTRERITQIYNEVLESPNNIALQKRLKE 88
Query: 64 I-----DILTQEMSSLK---TELKALKQRNSEYKGESDKYK----NRIKELEQK 105
+ D+ +S + E K L Q ++E KY +R K L +K
Sbjct: 89 VAPELYDLYQFARASERNDANEFKRLSQSSNEIVKAFAKYSYASLSRDKNLLEK 142
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.9 bits (50), Expect = 1.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 81 LKQRNSEYKGESDKYKNRIKELEQKIEALL 110
+KQ + E K ++ KY+ ++EL++ E+ L
Sbjct: 21 VKQASEEIKAKATKYEKALQELQKIDESKL 50
>ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE)
PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE
TRANSFERASE [Helicobacter pylori J99]
Length = 353
Score = 23.1 bits (48), Expect = 1.9
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 20 VRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELK 79
V FFK + + A+ K A+ +++KHQ+ ++G +SL ++
Sbjct: 63 VNKSFFKKIRSLFLQAKAAFK-----AKEILKKHQITHTISVGGFSAGPASFASLLNKIP 117
Query: 80 ALKQRNSEYKGESDKY 95
+ KG ++Y
Sbjct: 118 LYIHEQNAIKGSLNRY 133
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 23.1 bits (48), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 74 LKTELKALKQRNSEYKGESDKYKNRIKELEQK 105
++ ELK+ + +N E K + K K KE + K
Sbjct: 42 IRQELKSKELKNKELKNKDLKNKEEKKETKAK 73
>ref|NP_224173.1| putative [Helicobacter pylori J99]
Length = 308
Score = 22.7 bits (47), Expect = 2.5
Identities = 12/53 (22%), Positives = 25/53 (46%)
Query: 57 LQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEAL 109
L+ + +D +T E +++ + + L Q+N E + + + QKI L
Sbjct: 47 LKFLIAKMDTMTSERNAVLRDFRGLYQKNYALAKEIKNKREELFIVGQKIRGL 99
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 22.7 bits (47), Expect = 2.5
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 76 TELKALKQRNSEYKGESDKYKNRIKELEQK 105
TE+ LK + + K + D K+RI +E+K
Sbjct: 286 TEIAILKDLDEKNKVKDDGVKSRIIHVEKK 315
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 22.7 bits (47), Expect = 2.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 96 KNRIKELEQKIEAL 109
KNRI+ EQ+IEA+
Sbjct: 206 KNRIENYEQRIEAI 219
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 22.7 bits (47), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 4/38 (10%)
Query: 75 KTELKALKQRNSEYKGESDKYKNRIKE--LEQKIEALL 110
K++ +KQRN + + DK K + KE +EQ I L
Sbjct: 55 KSDFDMIKQRNPNF--DFDKLKEKEKEALIEQAIRTAL 90
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 22.3 bits (46), Expect = 3.3
Identities = 16/75 (21%), Positives = 34/75 (45%)
Query: 30 KRQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYK 89
K +E T S++ + + +QK + L ++ Q +++L L +KQ +
Sbjct: 185 KTRESTLKSLQTEQNKLILSMQKDYAIYNQRLSLLEKERQNLNALLKRLNIIKQNRENEE 244
Query: 90 GESDKYKNRIKELEQ 104
S K ++ E++Q
Sbjct: 245 RVSLKKSSQALEVKQ 259
>ref|NP_223319.1| putative [Helicobacter pylori J99]
Length = 353
Score = 22.3 bits (46), Expect = 3.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 91 ESDKYKNRIKELEQKIEALL 110
E D Y +E++QKIE LL
Sbjct: 66 EKDAYVLSYEEIDQKIEELL 85
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 21.9 bits (45), Expect = 4.3
Identities = 13/53 (24%), Positives = 24/53 (44%)
Query: 53 HQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQK 105
+Q++ + LG++ L + L ALK + E E K K + + +K
Sbjct: 327 NQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKK 379
>ref|NP_223795.1| 30S RIBOSOMAL PROTEIN S16 [Helicobacter pylori J99]
Length = 76
Score = 21.9 bits (45), Expect = 4.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 82 KQRNSEYKGESDKYKNRIKELEQK 105
K+R + +KG K R+++L QK
Sbjct: 52 KERLNYWKGVGAKMSERVEKLSQK 75
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.9 bits (45), Expect = 4.3
Identities = 11/36 (30%), Positives = 18/36 (49%), Gaps = 7/36 (19%)
Query: 80 ALKQRNSEYKGESDK-------YKNRIKELEQKIEA 108
A + ESD Y+ ++KELE+K++A
Sbjct: 510 AASSNQGRFNSESDHAIAVLSHYEAKLKELEKKLDA 545
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 21.6 bits (44), Expect = 5.6
Identities = 12/70 (17%), Positives = 31/70 (44%)
Query: 6 FILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGNID 65
+ L + +L++GV K E+ +A + ++ +K LQ+ L ++
Sbjct: 32 YALLSVVGSLLFLGVSLLVLNKEIKNIEKQHALITKEFEKKRETNEKLSLQMDEFLDDLQ 91
Query: 66 ILTQEMSSLK 75
+ + ++ L+
Sbjct: 92 LSGERINDLE 101
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 21.6 bits (44), Expect = 5.6
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 5 WFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKH 53
WF +AIVF+ +G+ F NAS A +L KH
Sbjct: 4 WFPYFLAIVFLHALGLALLFM--------ANNASFYAAASMAYMLGAKH 44
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 21.2 bits (43), Expect = 7.4
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 47 EILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKI 106
+I +Q +L+ Q + I + L + KA K+R+ + S + K +ELE I
Sbjct: 292 QIRLQLRKLKSQHK--ELGIAFIDYLQLMSGNKATKERHEQIAEISRELKTLARELEIPI 349
Query: 107 EALL 110
AL+
Sbjct: 350 IALV 353
>ref|NP_223403.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 223
Score = 21.2 bits (43), Expect = 7.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 38 SMKLTLQEAEILIQKHQLQLQRALGNIDI 66
++KL + I ++ LQL++ LG+ID+
Sbjct: 102 NIKLPMVICGIKKEECHLQLEKLLGHIDL 130
>ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 140
Score = 20.8 bits (42), Expect = 9.6
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 63 NIDILTQEMSSLKTELKALKQRNSEYKG 90
++DI T EM T AL +Y+G
Sbjct: 101 DLDIETSEMGKNSTMYLALSSALKKYRG 128
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 20.8 bits (42), Expect = 9.6
Identities = 6/34 (17%), Positives = 21/34 (61%)
Query: 26 KTVAKRQERTNASMKLTLQEAEILIQKHQLQLQR 59
KT+ + ++ + +K +++E + +KH ++ ++
Sbjct: 193 KTLNEENKQNDKKLKRSIKEKALYFEKHGVKKEK 226
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 20.8 bits (42), Expect = 9.6
Identities = 21/91 (23%), Positives = 41/91 (44%), Gaps = 17/91 (18%)
Query: 25 FKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMS-----------S 73
F + K +++ S ++QE I+K + L + +I + E +
Sbjct: 179 FSAIIKNEQKV--SKDKSIQEKIKKIEKQEKLLPGTIPSIKAMIVEFIFACEKKGVKQVA 236
Query: 74 LKTELKALKQRNSE----YKGESDKYKNRIK 100
L+ +AL++R + YK +SD +KN I+
Sbjct: 237 LQDIYQALEERIKKEEWGYKYKSDTFKNSIR 267
>ref|NP_224096.1| putative [Helicobacter pylori J99]
Length = 190
Score = 20.8 bits (42), Expect = 9.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 50 IQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRN 85
I+K LQL + + + E+S + +L+A Q+N
Sbjct: 152 IKKFSLQLSKKNFSNQSVEVEISGTRDDLQAFLQQN 187
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 20.8 bits (42), Expect = 9.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 79 KALKQRNSEYKGESDKYKNRIKELEQKIEAL 109
+AL N E + ++ +IKE+++K + L
Sbjct: 94 QALNLINKEDTEDKEELAKKIKEIKEKAKVL 124
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.134 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,343
Number of Sequences: 1491
Number of extensions: 3553
Number of successful extensions: 41
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 34
length of query: 110
length of database: 494,079
effective HSP length: 66
effective length of query: 44
effective length of database: 395,673
effective search space: 17409612
effective search space used: 17409612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 42 (20.8 bits)