BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645199|ref|NP_207369.1| galactosidase
acetyltransferase (lacA) [Helicobacter pylori 26695]
(151 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter... 281 4e-78
ref|NP_224048.1| putative [Helicobacter pylori J99] 27 0.19
ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS... 26 0.54
ref|NP_222801.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223657.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 24 2.1
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 3.5
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 23 3.5
ref|NP_223460.1| putative [Helicobacter pylori J99] 23 4.6
ref|NP_223784.1| putative [Helicobacter pylori J99] 22 6.0
ref|NP_223246.1| DIHYDROOROTASE [Helicobacter pylori J99] 22 6.0
ref|NP_222769.1| sodium/proline symporter [Helicobacter pyl... 22 6.0
ref|NP_223265.1| putative secretion/efflux abc transporter,... 22 7.8
ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pyl... 22 7.8
>ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter pylori J99]
Length = 151
Score = 281 bits (720), Expect = 4e-78
Identities = 142/151 (94%), Positives = 144/151 (95%)
Query: 1 MNKLLKFSQVFIGSDHAGLHLAEFVQRFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLE 60
MNK L +QVFIGSDHAGLHLAEFV+ FLEDK FKIQAFLPT RVDYPDYAKLVCQKVLE
Sbjct: 1 MNKPLNTAQVFIGSDHAGLHLAEFVKHFLEDKRFKIQAFLPTTRVDYPDYAKLVCQKVLE 60
Query: 61 NAQSYGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGV 120
NAQSYGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGV
Sbjct: 61 NAQSYGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGV 120
Query: 121 VESILEAFFSTEFEQGRHVLRIQKLDESLKS 151
ESILEAFFSTEFEQGRHVLRIQKLDESLKS
Sbjct: 121 AESILEAFFSTEFEQGRHVLRIQKLDESLKS 151
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 27.3 bits (59), Expect = 0.19
Identities = 17/45 (37%), Positives = 25/45 (54%), Gaps = 1/45 (2%)
Query: 5 LKFSQVFIGSDHAGLHLAEFVQRFLEDKDFKIQAFLPTMRVDYPD 49
LK QVF+ HA + A V+ +LE K K + F+ ++ DY D
Sbjct: 74 LKTVQVFLSHSHADKNKALGVKDYLESKT-KRKVFIDSLFWDYKD 117
>ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 339
Score = 25.8 bits (55), Expect = 0.54
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 12 IGSDHAGLHLAEFVQRFLEDKDFKI 36
+G+DH L + E V R LE+K F +
Sbjct: 8 MGADHGVLPIIEGVSRALENKSFSV 32
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 24.6 bits (52), Expect = 1.2
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 6 KFSQVFIGSDHAGLHLAEFVQRFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLENAQSY 65
K S+ F+ L L Q FL K KI+ T V D ++ + VL NA SY
Sbjct: 169 KLSENFV---EEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSY 225
Query: 66 GI-LVCATGIGMSMG 79
+ L + G G+ +G
Sbjct: 226 ALPLAQSMGYGLDLG 240
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 23.9 bits (50), Expect = 2.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 27 RFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLEN 61
R K+++I YP +VCQKVL N
Sbjct: 165 RASNSKEYQIAPIFDCGSCLYPQADDVVCQKVLSN 199
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 23.9 bits (50), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 6/34 (17%)
Query: 7 FSQVFIGSDHAGLHLAEFVQRFLEDKDFKIQAFL 40
FS F S H L Q F+EDK++ AF+
Sbjct: 140 FSTTFTSSKHPNL------QVFIEDKNYYTNAFI 167
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 23.1 bits (48), Expect = 3.5
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 29 LEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLENAQS-YGILVCATGIG 75
+ DK+FK AF+ P + ++ LE QS Y ++ + G
Sbjct: 471 VNDKEFKANAFVLNPPYSAPGNGMVFVEQALEKMQSGYASVIIQSSAG 518
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 23.1 bits (48), Expect = 3.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 65 YGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEK 114
+ ILV + ++ G+ R +RA LDA K + + N + +K
Sbjct: 134 FSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDK 183
>ref|NP_223460.1| putative [Helicobacter pylori J99]
Length = 206
Score = 22.7 bits (47), Expect = 4.6
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 2 NKLLKFSQVFIGSDHAGLHLAEFVQRFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLEN 61
NK+L F ++ +D+ L + ++ +LE K+ M+ Y ++ KVL +
Sbjct: 75 NKILVFDEMRNANDYTLTDLKKILKTYLEQ---KLPLIAQKMQTSYTHFSIRNNAKVLGS 131
Query: 62 AQSYG------ILVCA 71
+ +LVCA
Sbjct: 132 CSYHNRLSFALLLVCA 147
>ref|NP_223784.1| putative [Helicobacter pylori J99]
Length = 264
Score = 22.3 bits (46), Expect = 6.0
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 35 KIQAFLPTMRVDYPDYAKLVCQKVLENAQSYGILVCATG 73
KI+ FLPTM V + K V ++ + S ATG
Sbjct: 182 KIRGFLPTMHVPQLNLTKGVLAELFKYFDSEFFRDSATG 220
>ref|NP_223246.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 339
Score = 22.3 bits (46), Expect = 6.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 57 KVLENAQSYGILVC 70
+VLENAQ G ++C
Sbjct: 118 EVLENAQKLGFILC 131
>ref|NP_222769.1| sodium/proline symporter [Helicobacter pylori J99]
Length = 496
Score = 22.3 bits (46), Expect = 6.0
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 23/78 (29%)
Query: 66 GILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGVVESI- 124
G++ IG+S+GA L ++AK R++ + + SI
Sbjct: 75 GLINSHIAIGLSLGA---------LINWVFVAKRLRIYTSV-------------IANSIT 112
Query: 125 LEAFFSTEFEQGRHVLRI 142
+ +F T F +H+LR+
Sbjct: 113 ISDYFETRFSDDKHILRL 130
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 21.9 bits (45), Expect = 7.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 108 VLCLGEKISGIGVVESILEAFFSTE 132
V + K+ G+G + ++AF ST+
Sbjct: 276 VFIILSKLIGVGAIAGYIQAFSSTQ 300
>ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 21.9 bits (45), Expect = 7.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 32 KDFKIQAFLPTMRVDYPDYAKLVCQKVLENAQSYGILVCATGIGMSMGAN 81
KD AFL + + +Y+ + + + S + GIG++ GAN
Sbjct: 287 KDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGAN 336
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.140 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,809
Number of Sequences: 1491
Number of extensions: 6065
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 14
length of query: 151
length of database: 494,079
effective HSP length: 70
effective length of query: 81
effective length of database: 389,709
effective search space: 31566429
effective search space used: 31566429
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)