BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644689|ref|NP_206859.1| hypothetical protein
[Helicobacter pylori 26695]
(284 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222774.1| putative [Helicobacter pylori J99] 310 2e-86
ref|NP_222772.1| putative [Helicobacter pylori J99] 110 5e-26
ref|NP_223025.1| putative [Helicobacter pylori J99] 49 1e-07
ref|NP_223405.1| putative [Helicobacter pylori J99] 46 1e-06
ref|NP_223787.1| putative [Helicobacter pylori J99] 45 2e-06
ref|NP_223830.1| putative [Helicobacter pylori J99] 43 1e-05
ref|NP_223788.1| putative [Helicobacter pylori J99] 43 1e-05
ref|NP_222831.1| putative [Helicobacter pylori J99] 41 3e-05
ref|NP_223770.1| putative [Helicobacter pylori J99] 40 5e-05
ref|NP_222962.1| putative [Helicobacter pylori J99] 39 1e-04
ref|NP_223971.1| putative [Helicobacter pylori J99] 38 3e-04
ref|NP_223610.1| putative [Helicobacter pylori J99] 37 4e-04
ref|NP_223176.1| putative [Helicobacter pylori J99] 36 0.001
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 36 0.001
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 35 0.002
ref|NP_222874.1| putative [Helicobacter pylori J99] 35 0.002
ref|NP_223761.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223965.1| putative [Helicobacter pylori J99] 34 0.004
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 34 0.005
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 33 0.008
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 33 0.008
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 33 0.008
ref|NP_223645.1| putative [Helicobacter pylori J99] 32 0.019
ref|NP_222877.1| putative [Helicobacter pylori J99] 32 0.025
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 31 0.032
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 31 0.032
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 31 0.042
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 31 0.042
ref|NP_223731.1| putative [Helicobacter pylori J99] 30 0.072
ref|NP_223889.1| putative [Helicobacter pylori J99] 30 0.093
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 29 0.12
ref|NP_223415.1| putative [Helicobacter pylori J99] 29 0.12
ref|NP_223238.1| putative [Helicobacter pylori J99] 29 0.12
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 29 0.16
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 29 0.16
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 29 0.16
ref|NP_223530.1| putative [Helicobacter pylori J99] 28 0.36
ref|NP_223376.1| putative [Helicobacter pylori J99] 27 0.46
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 27 0.46
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 27 0.61
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 27 0.61
ref|NP_223089.1| putative [Helicobacter pylori J99] 27 0.61
ref|NP_222780.1| putative [Helicobacter pylori J99] 27 0.61
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 27 0.79
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 26 1.3
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 1.8
ref|NP_223520.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 25 1.8
ref|NP_223177.1| putative Glycolate oxidase [Helicobacter p... 25 1.8
ref|NP_222782.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223386.1| putative [Helicobacter pylori J99] 25 2.3
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 25 2.3
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 25 3.0
ref|NP_223661.1| putative [Helicobacter pylori J99] 25 3.0
ref|NP_224159.1| putative [Helicobacter pylori J99] 24 3.9
ref|NP_223713.1| putative [Helicobacter pylori J99] 24 3.9
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 24 3.9
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 24 5.1
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 5.1
ref|NP_223646.1| putative [Helicobacter pylori J99] 24 5.1
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 24 5.1
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 6.7
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 23 6.7
ref|NP_223409.1| putative [Helicobacter pylori J99] 23 6.7
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 23 6.7
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 23 6.7
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 23 6.7
ref|NP_224041.1| putative [Helicobacter pylori J99] 23 8.7
ref|NP_223915.1| putative [Helicobacter pylori J99] 23 8.7
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 23 8.7
ref|NP_223730.1| putative [Helicobacter pylori J99] 23 8.7
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 23 8.7
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 310 bits (795), Expect = 2e-86
Identities = 189/324 (58%), Positives = 218/324 (66%), Gaps = 41/324 (12%)
Query: 1 MGTFIEKCFGFYQVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKL 60
MGT IEK FGF Q+R+ELEARIS LEDEN EL E E LA TSELKDAN+QLRQKNDKL
Sbjct: 1 MGTLIEKWFGFSQIREELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKL 60
Query: 61 FTTKENLTQEKTELT---------------------EKNKVLTTEKGNLDNQLNASQKQV 99
F TK+ LT+E TEL + N LT EK L + + K+
Sbjct: 61 FITKDKLTKENTELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKEN 120
Query: 100 QALEQSQQVLENEKVELTNKI-------TDLSKEKENLTKANTELKTENDKLNHQVIALT 152
L ++ L EK ELT + T+L+ + LTK N L TENDKLNHQV ALT
Sbjct: 121 TRLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALT 180
Query: 153 KEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIE 212
E+DSL+QERA+LQDAHGFLE+ C NLEK+NQ LTDKLK+LESAQK+LEN+N+QL QA+E
Sbjct: 181 NERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQALE 240
Query: 213 N-----------IAEEKTELEREIARLKSLEATD-KSELDLQNCRFKSAIEDLKRQNRKL 260
N IA EK+ELEREIARLKSLE + KS+LDL N R SA EDLKRQNRKL
Sbjct: 241 NSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLASANEDLKRQNRKL 300
Query: 261 EEENIALKERAYGLKEQPSK-QPK 283
EEENIALKER GL EQ SK QP+
Sbjct: 301 EEENIALKERVDGLNEQLSKLQPQ 324
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 110 bits (274), Expect = 5e-26
Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 21/171 (12%)
Query: 16 KELEARISGLEDENAELFAENEKLALGTSELKDANNQLR--------------QKNDKLF 61
K L LE EN L A+ E L +EL+ N+L+ ++ + L
Sbjct: 40 KALTTEKERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLT 99
Query: 62 TTKENLTQEKTELTEKNKVLT-------TEKGNLDNQLNASQKQVQALEQSQQVLENEKV 114
+ENLT+EKTELTEKNKVLT TEK NL + SQKQV L+ S+QVLENEK
Sbjct: 100 KDRENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKA 159
Query: 115 ELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQL 165
+LTN+ T L +K +LT+ N L TE +LN+++ L E++ L ++ L
Sbjct: 160 DLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENL 210
Score = 97.4 bits (241), Expect = 4e-22
Identities = 69/205 (33%), Positives = 107/205 (51%), Gaps = 12/205 (5%)
Query: 35 ENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNA 94
EN K AL ++ + + + + + L + LT EK L +NK LT +K NL +
Sbjct: 11 ENPKDALKSTNFHEKHTKPTETTE-LVEENKALTTEKERLERENKNLTADKENLTKEKTE 69
Query: 95 SQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKE 154
QKQV L+ S+QVLENEK + + +L+K++ENLTK TEL +N L + L E
Sbjct: 70 LQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATE 129
Query: 155 QDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENI 214
+++L +E+ + Q L+ LE + LT++ KL++ + +L N +L
Sbjct: 130 KENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKNQRL------- 182
Query: 215 AEEKTELEREIARLKSLEATDKSEL 239
EKTEL +I L AT+K L
Sbjct: 183 TTEKTELNNKITGL----ATEKERL 203
Score = 74.7 bits (182), Expect = 3e-15
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 85 KGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKL 144
K + D Q N + E EL + L+ EKE L + N L + + L
Sbjct: 4 KSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENL 63
Query: 145 NHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSN 204
+ L K+ + LK + L++ NL KD ++LT + +L K L
Sbjct: 64 TKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEK 123
Query: 205 DQLLQAIENIAEEKTELEREIARLKSLE---ATDKSELDLQNCRFKSAIEDLKRQNRKLE 261
++L EN+ +EKTE ++++ LK+ + +K++L +N + K+ DL +N++L
Sbjct: 124 ERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKNQRLT 183
Query: 262 EENIALKERAYGLKEQPSK 280
E L + GL + +
Sbjct: 184 TEKTELNNKITGLATEKER 202
Score = 55.5 bits (132), Expect = 2e-09
Identities = 39/127 (30%), Positives = 59/127 (45%), Gaps = 14/127 (11%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTEL 74
R+ L + L ++N L E E+LA L + +++ ++L +K+ L EK +L
Sbjct: 102 RENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADL 161
Query: 75 TEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKAN 134
T +N L T+K + L + Q L EK EL NKIT L+ EKE L
Sbjct: 162 TNENTKLKTDKTD--------------LTEKNQRLTTEKTELNNKITGLATEKERLAADK 207
Query: 135 TELKTEN 141
L E+
Sbjct: 208 ENLTKES 214
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 48.9 bits (115), Expect = 1e-07
Identities = 56/269 (20%), Positives = 120/269 (43%), Gaps = 35/269 (13%)
Query: 43 TSELKDAN-NQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQA 101
T E+ + N ++L D KE E+ L N+ E + K+ +
Sbjct: 130 TQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNE---QEGETPKEEAQEEVKKEEV 186
Query: 102 LEQSQQVLENEKVELTNKITDLSKEKENLTKANTE----------------LKTENDKLN 145
E ++V E +K E+ D K K++ T+ + E L+T ++
Sbjct: 187 KEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQ 246
Query: 146 HQVIALTKEQDSLKQERAQLQDAHGF-----LEELCANLEKDNQHLTDKLKKLESAQKNL 200
Q + Q+ ++++ + QD+ ++EL +++++ +K K+ + Q+N
Sbjct: 247 EQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENK-KETQETQENT 305
Query: 201 ENSNDQLLQAIENIAEEKTELEREIARLKSLE----ATDKSELDLQNCRFKSAIEDLKRQ 256
E D Q +E EE+T+ E +++ LE A E ++Q + ++ ++L+ Q
Sbjct: 306 ETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETP-QELEAQ 364
Query: 257 NRKLEE----ENIALKERAYGLKEQPSKQ 281
+ KL+E ++ +++E A L+++ + Q
Sbjct: 365 DEKLQENETPKDESMQESAQNLQDKETPQ 393
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 45.8 bits (107), Expect = 1e-06
Identities = 50/236 (21%), Positives = 101/236 (42%), Gaps = 31/236 (13%)
Query: 14 VRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTE 73
+ K+++ + + L+ + E N +L+ ++ Q + ++ K++L + + E
Sbjct: 23 IAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLEKNRNE 82
Query: 74 LTEKNKVLTTEKGNLDN---QLNASQKQV----------------QALEQSQQVL----- 109
+ KVLT + +LD+ Q + QK+V Q L S V+
Sbjct: 83 SLVQEKVLTNYRKSLDHLQKQRSFLQKRVFDTLLEDFLFSQALKGQNLASSNDVILQVAF 142
Query: 110 ENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQ----- 164
EN +K++ LS+E++ L E+K+ K++ + + +LK + +
Sbjct: 143 ENLHQSTLSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLI 202
Query: 165 --LQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEK 218
+Q + + + LEK+ Q+L LK+L ++N EN L+ E K
Sbjct: 203 LSMQKDYAIYNQRLSLLEKERQNLNALLKRLNIIKQNRENEERVSLKKSSQALEVK 258
Score = 36.2 bits (82), Expect = 0.001
Identities = 22/89 (24%), Positives = 46/89 (50%), Gaps = 3/89 (3%)
Query: 177 ANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDK 236
+++ KD QH LKK + L + L +AI + +K E+ER++ LK ++
Sbjct: 21 SDIAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLEKNR 80
Query: 237 SELDLQN---CRFKSAIEDLKRQNRKLEE 262
+E +Q ++ +++ L++Q L++
Sbjct: 81 NESLVQEKVLTNYRKSLDHLQKQRSFLQK 109
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 45.4 bits (106), Expect = 2e-06
Identities = 40/203 (19%), Positives = 102/203 (49%), Gaps = 30/203 (14%)
Query: 13 QVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKT 72
+ +K+LE+ E+ + + ++ + + ++ ++ D++ T++N +Q K
Sbjct: 294 EFKKQLESYFDTSYQESTDTIKKMKE------DYTNKTDEALERLDEIIKTEQNNSQTKL 347
Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK 132
+ +++ T L +++ A+Q+++ +++S+++ N K++ +NK ++ K+ + K
Sbjct: 348 DTENLKRIIET----LRSKIKANQQKM--IDKSKEMSRNFKLD-SNK-NEIDAIKDLIKK 399
Query: 133 ANTELKTENDKLNHQVIALTKEQDSLKQERAQL------QDAHGFLEELCA------NLE 180
AN ++ N+ + + K++ S K++ + D + ++ C NLE
Sbjct: 400 ANEQITNHNETIKD----IEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLE 455
Query: 181 KDNQHLTDKLKKLESAQKNLENS 203
K+ +K+KKLE+ K LE +
Sbjct: 456 KEISENQEKVKKLENEIKELEKN 478
Score = 30.8 bits (68), Expect = 0.042
Identities = 31/150 (20%), Positives = 65/150 (42%), Gaps = 18/150 (12%)
Query: 110 ENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAH 169
E+ K+E+ NK KE++ + T K N + + +++S+ +E +
Sbjct: 85 ESLKIEVYNK---QFKEEQLRNSQVKGIFTLGKKTNENLEKIESKKESINKENEKKIKNE 141
Query: 170 GFLEELCANLEKDNQHLTD------------KLKKLESAQKNLENSNDQLLQAIENIAEE 217
L+ L EK+ + TD + K++ K E ++L+ EN
Sbjct: 142 ASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKILKEFENDKHN 201
Query: 218 KTE---LEREIARLKSLEATDKSELDLQNC 244
++E LE+ +++ + + +++EL L C
Sbjct: 202 QSEIVGLEKLKEKIEIVFSKNQTELALLEC 231
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 42.7 bits (99), Expect = 1e-05
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 8 CFGFYQVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENL 67
CF Q +KE+ + E ENA A + L E K + + + +K T +E
Sbjct: 93 CFADDQSKKEVAQ--AQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQ 150
Query: 68 -TQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKE 126
T+++ + TE+ K T+ +NQ+ Q+Q Q EQ +Q N + +L NK +E
Sbjct: 151 KTEQEKQKTEQEKQKTSNI-ETNNQIKVEQEQ-QKTEQEKQKTNNTQKDLVNKAEQNCQE 208
Query: 127 KEN-------------LTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLE 173
N + E KT +Q K + KQ +Q +
Sbjct: 209 NHNQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSK---AQ 265
Query: 174 ELCANLEKDNQHL 186
EL A L+K+ + L
Sbjct: 266 ELIAYLQKELESL 278
Score = 26.6 bits (57), Expect = 0.79
Identities = 31/148 (20%), Positives = 59/148 (38%), Gaps = 15/148 (10%)
Query: 129 NLTKANTELKTENDKLNHQVIALTK----------EQDSLKQERAQLQDAHGFLEELCAN 178
N+ A+ LKT + + I +T D K+E AQ Q E
Sbjct: 60 NVKTADDYLKTHPNSWFNSAIGVTAITAMLMNVCFADDQSKKEVAQAQKE---AENARDR 116
Query: 179 LEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSE 238
K L + +K E ++ E + Q + +EK + E+E + ++E ++ +
Sbjct: 117 ANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 176
Query: 239 LDLQNCRFKSAIEDLKRQNRKLEEENIA 266
++ + + K+ E K N + + N A
Sbjct: 177 VEQE--QQKTEQEKQKTNNTQKDLVNKA 202
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 42.7 bits (99), Expect = 1e-05
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 67 LTQEKTELTE---KNKVLTTEKG--NLDNQLNASQKQVQALEQSQQVLENEKVELTNKIT 121
L E+ ++ E KN L +KG L +L+ KQVQ L Q + +E K
Sbjct: 91 LQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLK-------- 142
Query: 122 DLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEK 181
+EN +A + LK EN+K K + L+ ER +++ A EL ++
Sbjct: 143 -----REN-NEAESRLKAENEK---------KLNEKLELEREKIEKALHEKNEL--KFKQ 185
Query: 182 DNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSE 238
+ L +L++AQ+ E S+ Q ++ +A E E R+ L S+E K +
Sbjct: 186 QEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIE--EFLRQKFPLDSVEEIKKGQ 240
Score = 31.2 bits (69), Expect = 0.032
Identities = 42/192 (21%), Positives = 88/192 (44%), Gaps = 25/192 (13%)
Query: 90 NQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVI 149
N A KQ+++ QS+ + + + E ++ + + ++ K N E K E K
Sbjct: 19 NVSEALYKQIESENQSRFLAQQKAFE--KEVNEKRAQYQSYFK-NLEQKEEALK------ 69
Query: 150 ALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQ 209
+ K+++AQ +A +++ A +D ++ K +E A+KN + L+
Sbjct: 70 ------ERAKEQQAQFDEA---VKQASALALQD-----ERAKIIEEARKNAFLEQQKGLE 115
Query: 210 AIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENIALKE 269
++ +EK++ +E+ + ++ K E + R K+ E+ K+ N KLE E +++
Sbjct: 116 LLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKA--ENEKKLNEKLELEREKIEK 173
Query: 270 RAYGLKEQPSKQ 281
+ E KQ
Sbjct: 174 ALHEKNELKFKQ 185
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 41.2 bits (95), Expect = 3e-05
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 67 LTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTN-------K 119
L QEK E + L E+ + + + K LEQ +Q +EL N +
Sbjct: 129 LEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQE 188
Query: 120 ITDLSKEKENLTKANTELKTENDK-LNHQVIALTKEQDSLKQERAQLQDAHGFL 172
+EK+ K+ EL+ + K +N Q + +++D +K+ Q+ HG L
Sbjct: 189 RQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQL 242
Score = 40.0 bits (92), Expect = 7e-05
Identities = 32/134 (23%), Positives = 58/134 (42%), Gaps = 7/134 (5%)
Query: 97 KQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQD 156
KQ++ LEQ ++ ++L + +E++ K+ EL+ E K N I L Q
Sbjct: 125 KQIE-LEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQI 183
Query: 157 SLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAE 216
+QER + + + LE+ Q + + L QK+ +Q N E
Sbjct: 184 KAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQ------NCQE 237
Query: 217 EKTELEREIARLKS 230
+ +L + AR+K+
Sbjct: 238 KHGQLFIKKARIKT 251
Score = 37.0 bits (84), Expect = 6e-04
Identities = 41/205 (20%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 30 AELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTEL---TEKNKVLTTEKG 86
+E+ E E+ S ++ AN+Q++ + ++ T +E K+E+ +K K + T++
Sbjct: 160 SEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRD 219
Query: 87 NLDNQLNASQKQVQALEQSQQVLENEKVEL-TNKITDLSKEKENLTKANTELKTENDKLN 145
+ Q + ++ Q ++ L +K + T T ++ E E K KT +
Sbjct: 220 LIKEQKDFIKETEQNCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQ 279
Query: 146 HQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSND 205
+ + +K+ S + +AQ EL A L+K+ + L K + + S+
Sbjct: 280 PKHLPNSKQPRSQRGSKAQ---------ELIAYLQKELESLPYSQKAIAKQVDFYKPSSI 330
Query: 206 QLLQAIENIAEEKTELEREIARLKS 230
L+ + E ++E +++S
Sbjct: 331 AYLELDPRDFKVTEEWQKENLKIRS 355
Score = 34.7 bits (78), Expect = 0.003
Identities = 21/107 (19%), Positives = 47/107 (43%)
Query: 118 NKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCA 177
+K +L +EK+ K+ +L+ E K + K + L+QER + + L
Sbjct: 124 DKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQI 183
Query: 178 NLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELERE 224
E++ Q + +K ++ LE + + ++ +E+ + +E
Sbjct: 184 KAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKE 230
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 40.4 bits (93), Expect = 5e-05
Identities = 43/200 (21%), Positives = 82/200 (40%), Gaps = 17/200 (8%)
Query: 79 KVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLS------KEKENLTK 132
K L N N L QV+A SQ+ L + NKI DL+ +E K
Sbjct: 34 KQLQVNSKNFSNILTKIHSQVEANTLSQEGLRSVYEGQANKIKDLNNAILSQEESLRALK 93
Query: 133 ANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKK 192
A+ E++ K Q + + + Q+ Q D +E+ L K +Q L ++
Sbjct: 94 ASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQN--KEMSELLTKLSQDLVSQIAL 151
Query: 193 LESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIED 252
++ A K E ++ L++ A + L+ E + + + +K++++ +D
Sbjct: 152 IQKALKEQEEKAEKPLKS-STPANKNPPLKAETPKNQEKKTQEKAKVEFD--------KD 202
Query: 253 LKRQNRKLEEENIALKERAY 272
L +Q +E + ++Y
Sbjct: 203 LSKQKEIFQEALSFFRNKSY 222
Score = 36.2 bits (82), Expect = 0.001
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 44 SELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALE 103
+++KD NN + + + L K + + L ++++ L +L N+++A+Q+ +Q L+
Sbjct: 73 NKIKDLNNAILSQEESLRALKASQEVQANTLKQQSQTLE----DLRNEIHANQQAIQQLD 128
Query: 104 ----QSQQVLENEKVELTNKITDLSKE-KENLTKANTELKTEND-KLNHQVIALT-KEQD 156
+ ++L +L ++I + K KE KA LK+ N + A T K Q+
Sbjct: 129 KQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQE 188
Query: 157 SLKQERAQLQ 166
QE+A+++
Sbjct: 189 KKTQEKAKVE 198
Score = 34.7 bits (78), Expect = 0.003
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 87 NLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNH 146
+L+N + + ++ ++AL+ SQ+V N + + + DL E +A +L +N +++
Sbjct: 77 DLNNAILSQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSE 136
Query: 147 QVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKN----LEN 202
LTK L + A +Q A L++ + LK A KN E
Sbjct: 137 ---LLTKLSQDLVSQIALIQKA----------LKEQEEKAEKPLKSSTPANKNPPLKAET 183
Query: 203 SNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIED---LKRQNRK 259
+Q E +EK ++E + K E ++ +N + A E L+ + +
Sbjct: 184 PKNQ-----EKKTQEKAKVEFDKDLSKQKEIFQEALSFFRNKSYAEAKERLLWLEANSYR 238
Query: 260 LEEENIALKERAYGLK 275
L L E AYG K
Sbjct: 239 LYYVRYVLGEVAYGEK 254
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 39.3 bits (90), Expect = 1e-04
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 39/166 (23%)
Query: 96 QKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQ 155
++ Q L Q + E++K EL + LS+++++L L+TEN +L
Sbjct: 17 EEAAQELLQCSAIFESKKAELKEDLRQLSEKEQSLRI----LQTENARL----------- 61
Query: 156 DSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIA 215
L+E L K + + +KLK L + ++ + + + ++N+
Sbjct: 62 ----------------LDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLI 105
Query: 216 EEKTELEREIARLK--------SLEATDKSELDLQNCRFKSAIEDL 253
EE + REI + K S KS L L+N ++A+E L
Sbjct: 106 EENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEIL 151
Score = 34.3 bits (77), Expect = 0.004
Identities = 40/168 (23%), Positives = 80/168 (46%), Gaps = 13/168 (7%)
Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK 132
EL + + + ++K L L +Q+ EQS ++L+ E L ++ +DL +KE +
Sbjct: 22 ELLQCSAIFESKKAELKEDL----RQLSEKEQSLRILQTENARLLDEKSDLLNKKEK--E 75
Query: 133 ANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKK 192
+ +LK K T+E+ LK +++ G L E+ KD++ + + K
Sbjct: 76 IDEKLKNLAAKEEAFKTLQTEEKKRLKN---LIEENEGILREI--KQAKDSK-IGETYSK 129
Query: 193 LESAQKNLENSNDQLLQAIENI-AEEKTELEREIARLKSLEATDKSEL 239
++ ++ L N A+E + A + EL + +A++ +A +EL
Sbjct: 130 MKDSKSALILENLPTQNALEILMALKPQELGKILAKMDPKKAAALTEL 177
Score = 30.4 bits (67), Expect = 0.055
Identities = 40/175 (22%), Positives = 78/175 (43%), Gaps = 18/175 (10%)
Query: 40 ALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQV 99
A+ S+ + LRQ ++K + + T+ L EK+ +L ++ +D +L K +
Sbjct: 28 AIFESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKL----KNL 83
Query: 100 QALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTEND-KLNHQVIALTKEQDSL 158
A E++ + L+ E+ ++ +L +E E + + E+K D K+ + + +L
Sbjct: 84 AAKEEAFKTLQTEE---KKRLKNLIEENEGILR---EIKQAKDSKIGETYSKMKDSKSAL 137
Query: 159 KQERAQLQDAHGFL-----EELCANLEKDNQHLTDKLKKL--ESAQKNLENSNDQ 206
E Q+A L +EL L K + L +L + ++N EN Q
Sbjct: 138 ILENLPTQNALEILMALKPQELGKILAKMDPKKAAALTELWQKPPKENKENKESQ 192
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 38.1 bits (87), Expect = 3e-04
Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 35/278 (12%)
Query: 17 ELEARISGLEDENAE-LFAENEKLALGTSELKDANNQLRQ--------KNDKLFTTKENL 67
+ A++S ++ ++ L+ NE L + + L + +QL++ + + F +
Sbjct: 25 QTNAKLSRSNEQLSDMLYKLNESLRIYQNVLSNNQDQLKEIKKANSTLTSQRRFFNASQI 84
Query: 68 TQEKTELTEKNKVLTTEKGN-LDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKE 126
T+ K L EK L+ L S + + +++SQ + E + + +L +
Sbjct: 85 RLMDTDALLKQSALELEKLQALEKHLKESMEHERLIKESQALFLQEHCPYLSGVKNLEEA 144
Query: 127 KENLT---KANTELKTENDKLNHQVI------ALTKEQDSLKQERAQLQDAHGFLEELCA 177
L K N + KL H + AL D + + Q Q +H E A
Sbjct: 145 SNALEVQEKNNALFLLKEPKLFHLLSRLDLMSALNALCDQVLENEIQDQQSHNKTLEYNA 204
Query: 178 NLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKS 237
+ D Q K +L K ++N +QA E+ + LE+ + LKS DK
Sbjct: 205 LMNHDFQAY--KAMRL----KKIKNKLQSQIQAKEDALKTFLPLEKRLETLKSRFLCDKE 258
Query: 238 ELDLQNC------RFKSAI--EDLKRQNRKLEEENIAL 267
+L++C R+++A+ D + +N K +E AL
Sbjct: 259 --NLKSCANQLQQRYQNALIERDKELKNAKNNKEKHAL 294
Score = 29.3 bits (64), Expect = 0.12
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 89 DNQLNASQKQVQALEQSQQVLE--NEKVEL-TNKITDLSKEKENLTKANTELKTENDKLN 145
D+Q NA K ++ EQ +L NE + + N +++ + + + KAN+ L ++ N
Sbjct: 23 DSQTNA--KLSRSNEQLSDMLYKLNESLRIYQNVLSNNQDQLKEIKKANSTLTSQRRFFN 80
Query: 146 HQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLE------SAQKN 199
I L LKQ +L+ + L ++E + + L+ S KN
Sbjct: 81 ASQIRLMDTDALLKQSALELEKLQALEKHLKESMEHERLIKESQALFLQEHCPYLSGVKN 140
Query: 200 LENSNDQLLQAIENIA---EEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQ 256
LE +++ L +N A ++ +L ++RL + A + L + ++ I+D +
Sbjct: 141 LEEASNALEVQEKNNALFLLKEPKLFHLLSRLDLMSALNA----LCDQVLENEIQDQQSH 196
Query: 257 NRKLE 261
N+ LE
Sbjct: 197 NKTLE 201
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 37.4 bits (85), Expect = 4e-04
Identities = 37/166 (22%), Positives = 75/166 (44%), Gaps = 10/166 (6%)
Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK 132
E+ ++ ++ +LD LN + + +A+ LE EK+ L ++ SK ++ L
Sbjct: 17 EIDSLEPLIREKRKDLDKALNDKEAKNKAILN----LEEEKLALKLQV---SKNEQTLQD 69
Query: 133 ANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKK 192
N ++ + K++ I +E SL E ++ NL+ + +H ++K +
Sbjct: 70 TNAKIASIQKKMSE--IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEV 127
Query: 193 LESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSE 238
L+ LE +L +EN + E ++ I + K E +K+E
Sbjct: 128 LKKEMLELEKLALELENLVENEVKNIKETQQIIFKKKE-ELVEKTE 172
Score = 24.6 bits (52), Expect = 3.0
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 172 LEELCANLEKD-NQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKS 230
LE L KD ++ L DK K A NLE L + + + +IA ++
Sbjct: 21 LEPLIREKRKDLDKALNDKEAK-NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 79
Query: 231 LEATDKSELDLQNCRFKSAI--EDLKRQNRKLEEENIALKERA 271
+ KSE +L++ + I E + NR++E +K ++
Sbjct: 80 KMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKS 122
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 35.8 bits (81), Expect = 0.001
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 26/222 (11%)
Query: 19 EARISGLEDENA---ELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELT 75
E RI E++ E E +K GT + QK ++ F KE + +
Sbjct: 251 EERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKE---ERRRSRD 307
Query: 76 EKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELT-NKITDLSKEKENLTKAN 134
E+ K T+K + +++ + E+ ++ E + L +K + KEN + N
Sbjct: 308 ERKKTKATKKA-----MEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKENEREIN 362
Query: 135 TELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLE 194
E E N+ + T+ LK+ A+ E + +++ + L ++ KK +
Sbjct: 363 QESANEPSSENNATLKDTENTSVLKESAAK-------KEAPKPSSKEEKRRLKEEKKKAK 415
Query: 195 SAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDK 236
+ Q+ E +A E+ ++ ELE R K+LE K
Sbjct: 416 AEQRAREFEQ----RAREHQERDEKELEE---RRKALEMNKK 450
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 35.8 bits (81), Expect = 0.001
Identities = 55/251 (21%), Positives = 107/251 (41%), Gaps = 30/251 (11%)
Query: 7 KCFGFYQVRKELEARISGLEDENAE---------LFAENEKLALGTSELKDANNQLRQKN 57
K F + K+L A+I + D N E LF EN +L + E+K + +
Sbjct: 244 KINAFSRGDKDLRAKID-VGDRNDEISQVGRGINLFVENARLIM--EEIKGISTLNKTSM 300
Query: 58 DKLFT-TKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALE----QSQQVLENE 112
DKL T+E K T N V + ++ + +NAS +Q Q L ++Q +++
Sbjct: 301 DKLVQITQETQKSMKNSSTTLNSV-KNKATDIASMMNASIEQSQGLRKRLIETQGLVKES 359
Query: 113 K---VELTNKITDLSKEKENLTKANTELKTENDKLNH--QVIALTKEQDSLKQERAQLQD 167
K +L ++IT+ + +E L+ +L D + +I +Q +L A ++
Sbjct: 360 KDAIGDLFSQITESAHTEEELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIEA 419
Query: 168 AHGFLEELCANLEKDNQHLTDKLKKLES-AQKNLENSNDQLLQAIENIAEEKTELEREIA 226
A + + D+++ L QK+L N ++ ++ I + +++
Sbjct: 420 AR------AGEHGRGFAVVADEVRNLAGRTQKSLAEINSTIMVIVQEINDVSSQMNLNSQ 473
Query: 227 RLKSLEATDKS 237
+++ L KS
Sbjct: 474 KMERLSDMSKS 484
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 35.0 bits (79), Expect = 0.002
Identities = 35/146 (23%), Positives = 63/146 (42%), Gaps = 10/146 (6%)
Query: 140 ENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKN 199
+N + NH+ L + ++A +LE+ +N+H+T+ K+
Sbjct: 415 DNLEFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTS-NNKHVTEGYVKVSLVADE 473
Query: 200 LENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNC--RFKSAIEDLKRQN 257
E +Q+LQ +N+ E + + + + L AT+K L+++N + SAI +
Sbjct: 474 KELLLEQILQEAQNLLEHRIDPK----DITILCATNKDALEIKNYLQEYLSAIRPSTESS 529
Query: 258 RKLE---EENIALKERAYGLKEQPSK 280
KL E I Y L E+P K
Sbjct: 530 AKLSQLVESKIIKNALEYALAEEPYK 555
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 35.0 bits (79), Expect = 0.002
Identities = 34/114 (29%), Positives = 51/114 (43%), Gaps = 24/114 (21%)
Query: 43 TSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTE------------------ 84
T K+AN L KN T+E +T+EK E E ++T E
Sbjct: 48 TPNSKNANTPLEPKNAAKIETQEKITEEKEEAKE---IITEEIVQENPTQALIPNERVFL 104
Query: 85 KGNLDNQLNASQKQVQALEQSQQVLENEKVE--LTNKITDLSKEKENLTKANTE 136
KG L+ L K +QALE+ + + + V L +++ L K E+L + NTE
Sbjct: 105 KGLLERTL-VLFKGMQALEEKEALKRLDLVARFLQYQLSVLEKRLESLERENTE 157
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 34.7 bits (78), Expect = 0.003
Identities = 51/234 (21%), Positives = 100/234 (41%), Gaps = 25/234 (10%)
Query: 51 NQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLE 110
N + KN + T E++ + + + +L T N D ++ ++ KQ+ +
Sbjct: 167 NSVNVKNGESPITYEDIANYRYIVNNADAILRT-LDNEDKEVISAFKQINGYAVVVEQAI 225
Query: 111 NEKVELTNKITDLS----KEKENLTKANTELKTEND-KLNHQVIALTKEQDSLKQERAQL 165
N+K EL K S K+ K ++ L D K+NH + + + ++L Q+
Sbjct: 226 NKKNELVLKTMYKSNGDYKDNNAYKKFSSTLTLNADAKVNHGLSSHSGATENLTQKPLTS 285
Query: 166 QDAHGFLEELCANLEKDNQHLTDKLKK--------LESAQKNLENSNDQLLQAIENIAEE 217
Q+ +L KD ++L + K L +A+K + ++QL E + +
Sbjct: 286 QE----------DLLKDTENLNETTPKPTHLSPLELANAEKLAKLESEQLQSEQEFLKAK 335
Query: 218 KTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQ-NRKLEEENIALKER 270
+ EL+R+ A K LE + +++ ED+ Q ++ + + L ER
Sbjct: 336 EQELKRKEALKKKLEHERGNAGHIESQTKIEVGEDIPTQVQAQIPKSRVRLNER 389
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 34.3 bits (77), Expect = 0.004
Identities = 62/300 (20%), Positives = 126/300 (41%), Gaps = 69/300 (23%)
Query: 5 IEKCFGFYQVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTK 64
+EK +++K + + L E + +++ L + +K+ N L Q N ++
Sbjct: 120 LEKQKKILELKKTKQQLVINLMINGIENYKNQQEIELLNTAIKNLENTLYQANHS--SSP 177
Query: 65 ENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLS 124
+ + K E+ + +L EK +L+ L++S + L ENE + + K + +
Sbjct: 178 DLIAIAKLEILKS--LLEIEKNDLEVALSSSHYSMGELTFK----ENEILSIAPKNFEFN 231
Query: 125 KEKE--NLTKANTEL---KTENDKLNHQVIALTKE--QD--------------------- 156
E+E N++ N ++ + + +K + K +D
Sbjct: 232 NEQELHNISATNYDIAIARLDEEKAQKDITLAKKSFLEDINVTGVYYFRSKQYYNYDMFS 291
Query: 157 -------SLKQERAQL-----QDAHGFLEELCANLEKDNQHLTDKL-KKLESAQKNLENS 203
L ++A+L +++ F E+ N + +HL KL KKLE+ QKNLE+
Sbjct: 292 VALSIPLPLYGKQAKLVEQKKKESLAFKSEV-ENAKNKTRHLALKLLKKLETLQKNLESI 350
Query: 204 NDQLLQAIENIAE------------------EKTELEREIARLKSLEATDKSELDLQNCR 245
N ++++ E IA+ ++ +I +L++L A + + L LQN +
Sbjct: 351 N-KIIKQNEKIAQIYALDLKTNGDYNAYYNALNDKITIQITQLETLSALNSAYLSLQNLK 409
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 33.9 bits (76), Expect = 0.005
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 109 LENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQV-IALTKEQDSLKQERA-QLQ 166
L + ++E K +L KE++ K E + D L HQ +L + + +L + A ++Q
Sbjct: 501 LSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAHQTQKSLDEHKTNLNENDANEIQ 560
Query: 167 DAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREI 225
+A L++ N L DK K L A + L + A +N AE+ + + ++
Sbjct: 561 NAINALKDCIKNDNATKAELEDKTKALTQAAQKLGEA-----MANKNNAEQPKKKDDDV 614
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 33.1 bits (74), Expect = 0.008
Identities = 61/276 (22%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 30 AELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTEK---NKVLTTEKG 86
A L A + L T+ L++ N +KLF L ++ +K N+ T
Sbjct: 559 ANLCATGRDIKLSTTHLENNKNFA----NKLFNAASYLKLKQESFKDKERLNEYQTALGR 614
Query: 87 NLDNQLNASQKQVQALEQSQQVLENEKV-------ELTNKITDLSK-EKENLTKANTELK 138
++LN K+V+ + + + + E + + SK E E + + + LK
Sbjct: 615 YAKSRLNLVTKEVRNALDNYRFNDATTLLYRFLWGEFCDWFIEFSKVENEAIDELGSVLK 674
Query: 139 TENDKLNHQVIALTKEQDSLKQERAQLQDAHGFL-----EELCAN--LEKDNQHLTDKLK 191
E KL H + E K +L++AH + +E+ + LE + + + D +
Sbjct: 675 -EALKLLHPFMPFISESLYHKLSNTELENAHSIMVMPYPKEIAQDEKLEHEFEVIKDCIV 733
Query: 192 KLESAQKNLENSNDQLLQA-------------IENIAEEKTELER-EIARLKSLEATD-- 235
L + LE L +A ++N A++ +LE+ + K L++
Sbjct: 734 SLRRLKIMLETPPIVLKEASVGLREKIENTERLQNYAQKLAKLEKVSVITYKPLKSVSDV 793
Query: 236 ----KSELDLQNCRFKSAIEDLKRQNRKLEEENIAL 267
++ DL+N I LK+Q KLE+E + L
Sbjct: 794 GEFCQTYADLENLDLSPLIARLKKQLEKLEKEKLKL 829
Score = 24.6 bits (52), Expect = 3.0
Identities = 13/31 (41%), Positives = 17/31 (53%)
Query: 247 KSAIEDLKRQNRKLEEENIALKERAYGLKEQ 277
K I L+R LE I LKE + GL+E+
Sbjct: 729 KDCIVSLRRLKIMLETPPIVLKEASVGLREK 759
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 33.1 bits (74), Expect = 0.008
Identities = 39/178 (21%), Positives = 82/178 (45%), Gaps = 28/178 (15%)
Query: 67 LTQEKTELTEKNKVLTT--EKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLS 124
+T++ E + K++ + L+ Q A +K+ +A EQ+Q+ ++++ +
Sbjct: 118 MTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKR--------EKR 169
Query: 125 KEKENLTKANTELKTENDKLNHQVIALTKE-QDSLKQERAQLQDAHGFLEELCANLEKDN 183
KE+ +AN E T N N Q ++ K + +KQ+R D LE++
Sbjct: 170 KEERAKNRANLENLT-NAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDM------QE 222
Query: 184 QHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDL 241
Q + LK++E K Q +A+ A++K ++ + KS ++ + + ++L
Sbjct: 223 QAQANALKQIEELNKK------QAEEAVRQRAKDKISIKTD----KSQKSPEDNSIEL 270
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 33.1 bits (74), Expect = 0.008
Identities = 45/204 (22%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 53 LRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENE 112
+++K ++ K + KTE T++NK + K N +N+ K +A + +V E
Sbjct: 1 MKKKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEG-KIKEAKTKESKVKETA 59
Query: 113 KVELTNKITDLSKEKENLTKANTELKTENDKLNHQ-VIALTKEQDSLKQERAQLQDAHGF 171
K + K ++ E L + +D ++++ +I ++ + +L Q + + +
Sbjct: 60 KEPIPVKKLSFNEALEELF-----ANSLSDCVSYESIIQISAKVPTLAQIKKIKELCQKY 114
Query: 172 LEELCANLEKDNQ-HLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELE-------- 222
++L ++ E + + DK+K E QK L D+ L+ + +EK LE
Sbjct: 115 QKKLVSSSEYAKKLNAIDKIKNTEEKQKVL----DEELEDGYDFLKEKDFLEWSRSDSPV 170
Query: 223 ----REIARLKSLEATDKSELDLQ 242
RE+ +K L ++ EL Q
Sbjct: 171 RMYLREMGDIKLLSKDEEIELSKQ 194
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 32.0 bits (71), Expect = 0.019
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 25 LEDENAELFAENEKLALG-TSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTT 83
L+ + +L A + + L T E K +N + N + T +E TQE+T + + TT
Sbjct: 326 LDSQAIDLNAISNSVGLNPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTT 385
Query: 84 EKGNL-------------DNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENL 130
++ D Q NA Q + + N K++ L K +
Sbjct: 386 QEQTTQEQTTQEQTTQEQDTQENAPTTIKQETPITPAIPLNPKIDFKPSEEVLIKGAKTR 445
Query: 131 TKAN-------TELKTENDKLNHQVIALTKEQDSLKQ 160
KAN EL+ + + L A KEQ+ L Q
Sbjct: 446 YKANIKAIELLKELQAKQEILKGDYYATLKEQEILAQ 482
Score = 26.2 bits (56), Expect = 1.0
Identities = 23/116 (19%), Positives = 43/116 (36%), Gaps = 4/116 (3%)
Query: 52 QLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLEN 111
QL+ K+ EN ++ E T + + LNA V + + +
Sbjct: 293 QLKISPKKVLEILENRLKKSIETTNETLNAFNVLDSQAIDLNAISNSVGLNPTQESKITD 352
Query: 112 EKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQD 167
VEL N ++E+ + E T+ Q T ++ + +++ Q QD
Sbjct: 353 NSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQ----TTQEQTTQEQTTQEQD 404
Score = 23.1 bits (48), Expect = 8.7
Identities = 13/38 (34%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Query: 247 KSAIEDLKRQNRKLEEENIALKERAYGLKEQPSKQPKP 284
+ IE+LK + E+N +E AY K P + KP
Sbjct: 1455 RGIIEELKEEELVNAEKNFERQELAY--KNNPRETKKP 1490
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 31.6 bits (70), Expect = 0.025
Identities = 44/241 (18%), Positives = 92/241 (37%), Gaps = 31/241 (12%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTEL 74
++EL+A +SG + EN E E E K+ + +++ + E +T +K +
Sbjct: 3 QEELDALMSGGDLENLEALEAKE-------EAKEPTKEEPKESKENSNYSEKMTVKKEDA 55
Query: 75 TEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKAN 134
+ K+ E K V L+ + E + ++ +++ + E + K
Sbjct: 56 EKYGKISPHEWP--PPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMV 113
Query: 135 TELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLE 194
+++ L K Q+ A F L + Q + + LK +E
Sbjct: 114 KKIQE----------PLQKHQEIFDNLHAHFPHVESFKTAL-----NEQQEILNALKSIE 158
Query: 195 SAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLK 254
N +S+ Q + ++ + ++ER + +++L N F+ I+D K
Sbjct: 159 EEAANCSDSSMQAMDIMQFQDIHRQKIERVVNVMRALS-------QYMNSLFEGKIDDSK 211
Query: 255 R 255
R
Sbjct: 212 R 212
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 31.2 bits (69), Expect = 0.032
Identities = 37/145 (25%), Positives = 61/145 (41%), Gaps = 17/145 (11%)
Query: 26 EDENAELFAENEKLALGTSELKDAN--NQLRQKNDKLFTTKENLTQEKTELTEKNKVLTT 83
ED+ E + + TSE + + ++L +K KL K TQ+K+ L E+ + L
Sbjct: 60 EDKLEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKS-LDEETQKLNE 118
Query: 84 EKGNLDNQLNASQKQVQ-----------ALEQSQQVLENEKVELTNKITDLSKEKENLTK 132
E D + N Q++ Q + S Q L NE+ N DL KE +
Sbjct: 119 ED---DQENNEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSD 175
Query: 133 ANTELKTENDKLNHQVIALTKEQDS 157
+ + TE+ + TK Q++
Sbjct: 176 NHLDNPTESSDNHLDNPTETKTQET 200
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 31.2 bits (69), Expect = 0.032
Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 88 LDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNH- 146
+DN + KQ ++L+ + Q LE E+TN IT + + + + ++K+ D +
Sbjct: 500 VDNLTKTAHKQERSLKNTTQSLE----EITNIITMIDSKSQEMISQGEDIKSVVDMIRDI 555
Query: 147 ----QVIALTKEQDSLK-------------QERAQLQDAHGFLEELCANLEKDNQHLTDK 189
++AL ++ + + R + L E+ AN+ Q + D
Sbjct: 556 ADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILVQSIADN 615
Query: 190 LKKLESAQKNLENSNDQLLQAIENIAEEKT 219
+ ++ K +EN ++ + +++ + T
Sbjct: 616 AESIKMQNKGVENIHNSINALQQDVQDNLT 645
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 30.8 bits (68), Expect = 0.042
Identities = 33/120 (27%), Positives = 52/120 (42%), Gaps = 22/120 (18%)
Query: 123 LSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKD 182
LS E E+K E +++ ++D+LK + L + H FLE+L +K
Sbjct: 16 LSANVEQFGSFFNEIKKEQEEV-------AAKEDALKARKKLLNNTHDFLEDLVFRKQKI 68
Query: 183 NQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQ 242
+ + + K L +LEN +EK LE+E R K L A K+ DL+
Sbjct: 69 KELVDYRAKVL----LDLEN----------KYKKEKEALEKE-TRGKILTAKSKAYGDLE 113
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 30.8 bits (68), Expect = 0.042
Identities = 36/165 (21%), Positives = 70/165 (41%), Gaps = 4/165 (2%)
Query: 53 LRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENE 112
L +K D+L + L + + E++KVL N ++ + + + + + E
Sbjct: 64 LLKKTDELSSHLVKLQMQFEKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEE 123
Query: 113 KVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFL 172
K +L + IT L E + + L +L+ I + KE + E + A
Sbjct: 124 KNQLLHAITALD---EKMKSSENHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALALA 180
Query: 173 EELCAN-LEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAE 216
EEL N L+ + HL ++L+N++ L++ E I++
Sbjct: 181 EELLKNVLDATDIHLKVNPLDYPYLNEHLQNASKIKLESNEAISK 225
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 30.0 bits (66), Expect = 0.072
Identities = 41/175 (23%), Positives = 70/175 (39%), Gaps = 25/175 (14%)
Query: 15 RKELEARISGLEDENAELF----AENEKLALGTSEL---------KDANNQLRQKNDKLF 61
RKE I L + + ++ A+ + LA+G E KDA +
Sbjct: 27 RKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKSYAH 86
Query: 62 TTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQK--------QVQALEQSQQVLENEK 113
+++ + + + +K + + NLDN AS K +ALE+ + LE+EK
Sbjct: 87 NNEKDRSDFERFKSRLDKAIDSFNQNLDNGA-ASLKLPSDIDIDDTKALEKFSKSLESEK 145
Query: 114 VELTNKITDLSKEKENLTKANTELKT-ENDKLNHQVIALTKEQDSLKQERAQLQD 167
+ N + K+ N E T + +LN Q D+ K ++LQD
Sbjct: 146 ESIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQ--KFQDVHDTSKITPSRLQD 198
Score = 24.3 bits (51), Expect = 3.9
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 183 NQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDL 241
+Q ++ +K E+ + + ND+ ++ + ++ + +RLKSL+ DK +L
Sbjct: 19 SQRVSPHARKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKEL 77
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 29.6 bits (65), Expect = 0.093
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 55 QKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKV 114
++ + F+ KE T TE+N T LD A+QKQ E Q++ + K
Sbjct: 54 ERQNSTFSPKEE-ANATTTATEQNPTKDTVPP-LDT---ATQKQEIKQEIKQEIKQEIKQ 108
Query: 115 ELTNKI-------TDLSKEKENLTKANTELKTENDK 143
E+ +I T +EKEN K N+ +ND+
Sbjct: 109 EIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQ 144
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 29.3 bits (64), Expect = 0.12
Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 45/244 (18%)
Query: 65 ENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLS 124
EN+ ++ E +KN++ K N +K + ++V +V+ N T+
Sbjct: 37 ENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIYVDKEVRVLIEVKALNNKTEFP 96
Query: 125 KEKEN-LTKANTEL---------KTENDKLNHQVIALT--------KEQDSLKQER---- 162
K +EN L+KA ++ K +N+ L H +I K+ SLK+++
Sbjct: 97 KNRENPLSKAFCQMVLYFLEEIEKEKNNSLKHTIICNAHEFFLFDCKDLLSLKEDKRIKK 156
Query: 163 ----------------AQLQDAHGFL-EELCANLEKDNQHLTDKLKKLESAQKNLENSND 205
+D FL E+ L + +L+D K+L + L S +
Sbjct: 157 FYKNYAKKEGTDSSKPKFYKDLEQFLQEDFQGELRYTHFNLSDDFKELPLIYQVL--SQE 214
Query: 206 QLL---QAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIED-LKRQNRKLE 261
LL + ++ K E + L E DK ++ ++ R K+++ LK + + L+
Sbjct: 215 VLLKQKRTLDANTLNKDFYEELLYILGLEEQNDKGKILIKPSRTKNSLSGALKEKYKNLD 274
Query: 262 EENI 265
+E +
Sbjct: 275 DEEV 278
Score = 26.9 bits (58), Expect = 0.61
Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 21/249 (8%)
Query: 32 LFAENEKLALG---TSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNL 88
L EN+++ + T E+ + LR+ ND ++ L + K + E N + +
Sbjct: 552 LTLENDEIIIHYTPTGEIFNYKKPLRE-NDPHHHIQKELFELKKSIIE-NCLFGVDINPN 609
Query: 89 DNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQV 148
++ + ++ L+ S + E K TN + L N+ AN+ + N LN +
Sbjct: 610 SCEITKLRLWIELLKYSYYIFEEGKN--TNALETLPNIDINIKCANSLISRFN--LNDDL 665
Query: 149 IALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLL 208
K+ ++K++ + +D L A + N L + ++L+N+ L
Sbjct: 666 ----KKIPNIKKKIQEYKD-------LVAQYKDPNPLYPLNKADLINKIQDLKNTFSLTL 714
Query: 209 QAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENIALK 268
+ + AE + +E+ I + DKS LD N S LK + K EEE A
Sbjct: 715 KDPKTKAELEKTIEKHIKKYNFFALDDKSLLDGLNYFIPSLFGTLK-LSPKEEEEAFASY 773
Query: 269 ERAYGLKEQ 277
R L+++
Sbjct: 774 GRIRALRKK 782
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 29.3 bits (64), Expect = 0.12
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 193 LESAQKNLENSNDQLLQAIENI-AEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIE 251
+E+ + +++ +L Q EN + +T +++ A LK LEA K + + + +
Sbjct: 57 VEAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKK 116
Query: 252 DLKRQNRKLEEENIALKERAYGLKEQPSK 280
+L+++ + LE+E K++ KE +K
Sbjct: 117 ELEKERQILEQERENFKKQRAICKEAQAK 145
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 29.3 bits (64), Expect = 0.12
Identities = 17/55 (30%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
Query: 104 QSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSL 158
Q Q+ L N + LT +++ L E + L + N+E K E+DK +++ L ++ ++L
Sbjct: 56 QLQRALGNIDI-LTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKQLEQKIEAL 109
Score = 23.1 bits (48), Expect = 8.7
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 38 KLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQK 97
KL L +E+ +QL+ + + + LTQE + L + K L + + +
Sbjct: 40 KLTLQEAEILIQKHQLQLQ--RALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKN 97
Query: 98 QVQALEQSQQVL 109
+++ LEQ + L
Sbjct: 98 RIKQLEQKIEAL 109
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 28.9 bits (63), Expect = 0.16
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 96 QKQVQALEQSQQ---VLENEKVELTNKI------TDLSKEKENLTKANTELKTENDKLNH 146
+++ +ALEQ++Q + EN++ + +K T+ + KEN T+ TE+K E ++
Sbjct: 462 EERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEKIEVPT 521
Query: 147 QVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHL 186
+ L E+ + E E++ A L+K N L
Sbjct: 522 KTTYLLLEEAGINLET---------YEKILALLQKSNNTL 552
Score = 26.9 bits (58), Expect = 0.61
Identities = 27/107 (25%), Positives = 45/107 (41%), Gaps = 24/107 (22%)
Query: 19 EARISGLEDENAELF---------AENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQ 69
EA + LE+E + EN++ A+ + E K+ N + KEN T+
Sbjct: 454 EAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENKT------EAAAPKENQTE 507
Query: 70 EKTELTE-------KNKVLTTEKGNLDNQLNASQKQVQALEQSQQVL 109
KTE+ E K L E+ ++ L +K + L++S L
Sbjct: 508 NKTEVKEEKIEVPTKTTYLLLEEAGIN--LETYEKILALLQKSNNTL 552
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 28.9 bits (63), Expect = 0.16
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 123 LSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKD 182
L + + ++ +AN + ND + I L + +Q + +DA E+ +
Sbjct: 75 LKEIERSIQEANIGVNPNNDG---ETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNT 131
Query: 183 NQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEE 217
Q +K+KKLE ++ E+ + + + I+ I +E
Sbjct: 132 RQDANNKVKKLEKDKEISEDESKKAQEQIQKITDE 166
Score = 24.6 bits (52), Expect = 3.0
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 103 EQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQDSLKQE 161
E+++ + N + + NK+ L K+KE + + + + K+ + A+ K +S+K +
Sbjct: 122 EKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDE--AIKKIDESVKNK 178
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 28.9 bits (63), Expect = 0.16
Identities = 39/202 (19%), Positives = 82/202 (40%), Gaps = 16/202 (7%)
Query: 84 EKGNLDNQLNASQKQV--QALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTEN 141
E L +S K++ +AL ++ V E + +++ K+ E K +
Sbjct: 573 EANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKQAQKDLEKSLK-------KR 625
Query: 142 DKLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLE 201
++L V + + K + A+ +E+ A + K+ ++ + + +NL+
Sbjct: 626 ERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKE----ANRDARAIAYAQNLK 681
Query: 202 NSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDL---KRQNR 258
+L +ENI ++ + + K+ + D S+ + K +++DL
Sbjct: 682 GIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWIS 741
Query: 259 KLEEENIALKERAYGLKEQPSK 280
K+E N AL E G + SK
Sbjct: 742 KVENLNAALNEFKNGKNKDFSK 763
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 27.7 bits (60), Expect = 0.36
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 8/55 (14%)
Query: 20 ARISGLEDENAELFAENEKLALGTSELKDANNQLRQKN-----DKLFTTKENLTQ 69
AR GL + A+L + +L+L + +LK ++++R+ + DKLF+ +ENLT+
Sbjct: 186 ARDEGLRVDIADL---SNRLSLLSQDLKYNSDKVRKLSSNEVKDKLFSIRENLTK 237
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 27.3 bits (59), Expect = 0.46
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 196 AQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKR 255
A +++ + +L + +E + E+K + + + + TDK + R K+ E LK+
Sbjct: 39 APQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAIKEALKK 98
Query: 256 QNRKLEEENIALKERAYGLKEQPSKQPK 283
N + +++ L+ +G K + K K
Sbjct: 99 GNMEDMDDDFGLRSCKHGKKHKHDKHGK 126
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 27.3 bits (59), Expect = 0.46
Identities = 46/227 (20%), Positives = 91/227 (39%), Gaps = 25/227 (11%)
Query: 36 NEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNAS 95
N++L L S+ KD+ +K L+ + NL + + KN + + GNL + N
Sbjct: 4 NKQLQLQISQ-KDSEIAELKKEVNLYQSLLNLCLHEGFVGIKNNKVVFKSGNLASLNNLE 62
Query: 96 QKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQ 155
++ V E ++ V NL + LK++N Q +L K+
Sbjct: 63 EQSVHFKENAESV--------------------NLQGVSYSLKSQNID-GVQYFSLAKKT 101
Query: 156 DSLKQ--ERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIEN 213
+ + + + L+E N ++ Q+ + L +A KN E +++ L +
Sbjct: 102 GGVGEYHKNDLFKTFCTSLKEGLENAQESMQYFHQETGLLLNAAKNGEEHSNEGLITVNK 161
Query: 214 IAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKL 260
++ L ++ SL A ++ + + S I+D+ Q L
Sbjct: 162 TGQDIESLYEKMQNATSL-ADSLNQRSNEITQVISLIDDIAEQTNLL 207
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 26.9 bits (58), Expect = 0.61
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 113 KVELTNKITDLSKEKENLTKANTELKTENDKLNHQV-----IALTKEQDSLKQERAQLQD 167
K+EL + + ++K N+ + N + K DKL+ ++ + ++ S++ R
Sbjct: 342 KMELIDDLRIVNKTNSNMVRINAKFKWTQDKLDDEIKEGTTFVIKSDEFSMRYIR----- 396
Query: 168 AHGFLEELCANLEKDNQHLTDKLKKLESAQKNLENSN---------DQLLQAIENIAEEK 218
G E +N+ +T +K + NSN + LLQ I I+ +
Sbjct: 397 -KGDREVKASNVFNAECGVTTNIKATSEIKVLFANSNTDLFSTPKPEALLQRILEISTNE 455
Query: 219 TEL 221
+L
Sbjct: 456 NDL 458
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 26.9 bits (58), Expect = 0.61
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 68 TQEKTELTEKNKVLTTE-KGNL---DNQLNASQKQVQALEQSQQVLENEKVELTNKITDL 123
T EK + KNK L E NL + L K A Q V E+EK E+ NKI +
Sbjct: 368 TNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPSAYFQLG-VSESEKQEIENKIEER 426
Query: 124 SKEKENLTKANTELKTENDKLNHQVIAL 151
+ KE K + + ++L Q IAL
Sbjct: 427 KRAKEQ--KDFLKADSIREELLQQKIAL 452
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 26.9 bits (58), Expect = 0.61
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 225 IARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENIALKE 269
+A + L+ATD L+ +N + I +LKRQ L E+ ++ KE
Sbjct: 10 LAFIIGLQATDYDNLEEENQQLDEKINNLKRQ---LTEKGVSPKE 51
Score = 23.1 bits (48), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 199 NLENSNDQLLQAIENIAEEKTE 220
NLE N QL + I N+ + TE
Sbjct: 23 NLEEENQQLDEKINNLKRQLTE 44
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 26.9 bits (58), Expect = 0.61
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 15 RKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTEL 74
++ LE +++ + A NE +EL+ A L QK D + EN TQ+ E
Sbjct: 314 KEALEGFTEKIKESPNDSNAINEAFDNLETELERATENLSQKIDPVLERNENYTQKALEY 373
Query: 75 TE 76
E
Sbjct: 374 RE 375
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 26.6 bits (57), Expect = 0.79
Identities = 26/97 (26%), Positives = 46/97 (46%), Gaps = 5/97 (5%)
Query: 170 GFLEELCANLEKD---NQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIA 226
GF+E+ + L+ + NQ D L+ A +EN D LL+ + + EL+
Sbjct: 553 GFIEQYISPLKTNFHKNQKFDDNKILLQLAVYIIENLKDTLLKEQDKPSVSTLELKEFET 612
Query: 227 RLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEE 263
KSL A++ E D+ + +D+++ + LE E
Sbjct: 613 HNKSLSASE-WEKDIPPYEW-LLFKDMRKLDSDLERE 647
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 25.8 bits (55), Expect = 1.3
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 177 ANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIA---EEKTELEREIARLKSLEA 233
A LEK NQ+ L+ E +N+ ++L+ + N A + + EI + +L
Sbjct: 190 AQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSEIFKNGNLNM 249
Query: 234 TDKSELDLQNCRFKSAIEDLKRQNRKL 260
K E + + + E L+ Q R L
Sbjct: 250 QAKEEEVREKLQEERENEYLRNQIRSL 276
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 25.4 bits (54), Expect = 1.8
Identities = 26/133 (19%), Positives = 55/133 (40%), Gaps = 6/133 (4%)
Query: 13 QVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKT 72
Q ++ + ++ ++ ++ ++N TS + +N + + L T + + Q++
Sbjct: 445 QAQQTYQEDVANSQNALNKVASDNTIANNDTSYTQSSNPTILKDAQGLENTNQQIQQDEK 504
Query: 73 ELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTK 132
L EK+ + N N QA Q+Q+ + ++ L N + E+E L +
Sbjct: 505 AL-EKDLAQIKQLANSTTGFNE-----QAFTQAQKQEQQDEQALQNDENAFNTEQEGLEQ 558
Query: 133 ANTELKTENDKLN 145
A K N N
Sbjct: 559 AIANAKHANPTPN 571
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 25.4 bits (54), Expect = 1.8
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 14 VRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTE 73
++ EL A +ED L +K+ L ELK LR+K L K+ + Q+K E
Sbjct: 1 MQDELNAYQQEIEDTREVL----KKIRL---ELKQVQEILRKKKSVLKGLKQEICQKKLE 53
Query: 74 LTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVL----------ENEKVELTNKITDL 123
T+ D + ++V+ + QV+ E ++ + + +
Sbjct: 54 KENFRSNKETQNTEEDVIFPKALEEVEVYAKDNQVIMAKPCKRLFNEGLYLQYRSVLREN 113
Query: 124 SKEKENLTK---ANTELKTENDKLNHQVIALTKEQDSLKQE 161
K +L+K N+ LK E L H+ I L + Q+ LK +
Sbjct: 114 RLLKNHLSKKDFENSLLKIELRDL-HKEIKLYQVQNLLKDK 153
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 25.4 bits (54), Expect = 1.8
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 52 QLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQAL--EQSQQVL 109
Q+R D K NLT T K + + + G + N SQ+++ L S V
Sbjct: 180 QIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVN----SQRELSILINANSYSVA 235
Query: 110 ENEKVELTN--KITDLSKEKENLTKANT 135
+ EK+++ N ++ D++K + L + NT
Sbjct: 236 DVEKIQVGNHVRLGDIAKIEIGLEEDNT 263
>ref|NP_223177.1| putative Glycolate oxidase [Helicobacter pylori J99]
Length = 459
Score = 25.4 bits (54), Expect = 1.8
Identities = 32/132 (24%), Positives = 49/132 (36%), Gaps = 10/132 (7%)
Query: 143 KLNHQVIALTKEQDSLKQERAQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKNLEN 202
KLN V SL QE A++ +GF + N H+ LE +++LE
Sbjct: 338 KLNEDVTVPRASLPSLLQEVAKISQKYGFKIPCFGHTGDGNVHVN---IMLEDPKRDLEK 394
Query: 203 SNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEE 262
+ +A+E I + LE L S+ F + +L R +K +
Sbjct: 395 GH----KAMEEIFQAAISLE---GTLSGEHGIGLSKAKFMPLAFNHSEMELFRNIKKALD 447
Query: 263 ENIALKERAYGL 274
N L GL
Sbjct: 448 PNNILNPFKMGL 459
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 25.4 bits (54), Expect = 1.8
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 178 NLEKDNQH----LTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEA 233
NLE++ Q+ + ++L++ + +K ++ + I+ + E E ERE R
Sbjct: 53 NLEQETQYEMRKINEQLEEAKRLEKQVDMQDRHSQSEIDRLMREAKEHEREAKRRYGEYL 112
Query: 234 TDKSE 238
DK++
Sbjct: 113 KDKND 117
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 25.0 bits (53), Expect = 2.3
Identities = 28/152 (18%), Positives = 61/152 (39%), Gaps = 14/152 (9%)
Query: 14 VRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTE 73
V +++ L+D N E+ N+ L E++D N ++ Q L +E + + ++
Sbjct: 284 VYRQMPPAKQALQDINREMEYLNKTLEKRRKEIQDLNKEISQARIHL---REFIIRYFSD 340
Query: 74 LTEKNKVLTTEKGN-------LDNQLNASQKQVQALEQSQQVLENEKVEL----TNKITD 122
L + + E N D +N + E+ Q + NE ++ + ++
Sbjct: 341 LIRQVSGASLETFNDFVIREIGDEYINMETRVKNEFEKQTQGISNEIAKIGTTFNSDMSS 400
Query: 123 LSKEKENLTKANTELKTENDKLNHQVIALTKE 154
K + +L ++ +N I LT++
Sbjct: 401 FEKHARTFGRIGIKLLEQSKFINATNIKLTRD 432
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 25.0 bits (53), Expect = 2.3
Identities = 12/53 (22%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Query: 97 KQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVI 149
K + + + + K +L +I+DL++EK+ + +E++ E+D+ +V+
Sbjct: 256 KNKEIIVLGEMPFQTNKAKLVEQISDLAREKQ--IEGISEVRDESDREGIRVV 306
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 24.6 bits (52), Expect = 3.0
Identities = 15/61 (24%), Positives = 30/61 (48%)
Query: 223 REIARLKSLEATDKSELDLQNCRFKSAIEDLKRQNRKLEEENIALKERAYGLKEQPSKQP 282
R I +K+L T + N ++ IE++ ++ + + +N+ + G KE P K+
Sbjct: 92 RSIDLMKTLLVTIRDTGSDTNNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEV 151
Query: 283 K 283
K
Sbjct: 152 K 152
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 24.6 bits (52), Expect = 3.0
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 3 TFIEKCFGFYQVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQKNDKLFT 62
TF G + KE + L N++L NE S N +++ N K
Sbjct: 119 TFKPWDLGSKEASKENASMSEELTQNNSKLSHFNENSIAQNSV---GQNNVKEPNTKSNN 175
Query: 63 TKENLTQEKTELTEKNKVLTTEKGNLDNQLNAS 95
+K+N + ++LT +NQ++A+
Sbjct: 176 SKQNHSLSNSDLTSNTDYNKLVADMFENQMDAN 208
>ref|NP_224159.1| putative [Helicobacter pylori J99]
Length = 67
Score = 24.3 bits (51), Expect = 3.9
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 82 TTEKGNLDNQLNASQKQVQALEQSQQV---LENEKV---ELTNKITDLSKEKENLTKA 133
+T+K + + NA+ ++QA ++ +QV L+ EKV ++ N D + E +L +A
Sbjct: 4 STKKLEYEERFNAALLKLQACQEEKQVASCLKCEKVLNCKIRNSYVDAAYESMSLGEA 61
>ref|NP_223713.1| putative [Helicobacter pylori J99]
Length = 75
Score = 24.3 bits (51), Expect = 3.9
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 51 NQLRQKNDKLFTTKENLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLE 110
NQL K D+L + +E + L + N L + D Q+ ++ A ++ Q
Sbjct: 8 NQLGAKIDELIEKIQKQEEELSALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQ--- 64
Query: 111 NEKVELTNKITDL 123
L +KI+DL
Sbjct: 65 ----GLYDKISDL 73
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 24.3 bits (51), Expect = 3.9
Identities = 32/161 (19%), Positives = 68/161 (41%), Gaps = 8/161 (4%)
Query: 67 LTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKITDLSKE 126
LT E ++ +N E L+N + +Q++ + + +LEN+ V + I + +
Sbjct: 207 LTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPI--VGGK 264
Query: 127 KENLTKANTELKTENDKLNHQVI----ALTKEQDSLKQERAQLQDAHGFLEELCANLEKD 182
+ + + N E K + + EQ+ +++ + G + + +N+
Sbjct: 265 NKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNI-GP 323
Query: 183 NQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELER 223
Q L D K+ E +K+ +N ++ + I I E L R
Sbjct: 324 VQGLKDN-KEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVR 363
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 23.9 bits (50), Expect = 5.1
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 111 NEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIA 150
NE++ + N ++D+ E +L + + LNH +++
Sbjct: 577 NEQIAIANILSDVDSEIISLKNKKRQFENVKKALNHDLMS 616
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 23.9 bits (50), Expect = 5.1
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 96 QKQVQALEQSQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIALTKEQ 155
+ + Q L++ + ++K+E TNK L ++ + + K K ++ LN L +
Sbjct: 201 ETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIK 260
Query: 156 DSLKQE 161
LK+E
Sbjct: 261 PFLKEE 266
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 23.9 bits (50), Expect = 5.1
Identities = 29/132 (21%), Positives = 59/132 (43%), Gaps = 17/132 (12%)
Query: 109 LENEKVELTNKITDLSKEKENLTKAN-------TELKTENDKLNHQVIALTKEQDSLKQE 161
++N +L KI +L E +TK N E K +L + + AL + +L +
Sbjct: 1 MDNAITKLPEKIKELENSIE-ITKKNIAKYTRLVEQKPSYPRLEY-LQALKWDHKTLIDD 58
Query: 162 RAQLQDAHGFL-------EELCANLEKDNQHLTDKLKKLESAQKNLENSNDQLLQAIENI 214
A++ + +E+ NL + + + ++ + + N + S+D++ A E +
Sbjct: 59 LAKMSKDRNYKPAFNPKSKEVLKNLNAEKRASLENEREEQGVKGNTK-SHDEIEPATEQV 117
Query: 215 AEEKTELEREIA 226
E++ E EIA
Sbjct: 118 IEKEIEKGDEIA 129
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 23.9 bits (50), Expect = 5.1
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 210 AIENIAEEKTELEREIARLKSLEATDKSEL 239
AIEN+ + K+E+ +A +SLE K ++
Sbjct: 180 AIENLLQTKSEIITPLAFQRSLEKKAKKQI 209
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 23.5 bits (49), Expect = 6.7
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 47 KDANNQLRQKNDKLFTTKENLTQE--KTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQ 104
KD +L++ + E+L E KT + KN D+ A ++Q LE+
Sbjct: 15 KDIQKELKKAAAENKLQTEDLWFEILKTSIFIKNSAK-------DDFSEAFGGELQQLEE 67
Query: 105 SQQVLENEKVELTNKITDLSKEKENLTKANTELKTENDKLNHQVIA----LTKEQDSLKQ 160
+ EK ELT T K K N K E+K + D ++I + + + Q
Sbjct: 68 EEYY---EKKELTLYQTHDIKIKSNAYKRFFEVKVDEDLSKIEIILDECFIVLDTEEYYQ 124
Query: 161 ER-AQLQDAHGFLEELCANLEKDNQHLTDKLKKLESAQKN 199
E A +++ F + + + ++L +L+K + +N
Sbjct: 125 EMFAYIKERLAFEGVVFRHFSQMYENLKTELRKYQKEAQN 164
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 23.5 bits (49), Expect = 6.7
Identities = 14/61 (22%), Positives = 30/61 (48%), Gaps = 5/61 (8%)
Query: 181 KDNQHLTDKLKKLESAQKNLENSNDQLLQAIENIAEEKTELEREIARLKSLEATDKSELD 240
KD ++ +KL +E + + +++ EN+A+ E+E ++ LK + E+
Sbjct: 535 KDYKNFEEKLTDC-----GVETTLTEAMKSFENLAKLTEEIENKVFSLKEDAILEYQEMS 589
Query: 241 L 241
L
Sbjct: 590 L 590
>ref|NP_223409.1| putative [Helicobacter pylori J99]
Length = 79
Score = 23.5 bits (49), Expect = 6.7
Identities = 15/62 (24%), Positives = 36/62 (57%), Gaps = 6/62 (9%)
Query: 177 ANLEKDNQHLTDKLKKLESAQ-KNLE-----NSNDQLLQAIENIAEEKTELEREIARLKS 230
A ++KD++ +++L Q K+L+ + + + Q+IE + +EK EL+ ++ + K
Sbjct: 14 ALVKKDSKLAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKEKEELQSQMHKAKQ 73
Query: 231 LE 232
++
Sbjct: 74 IQ 75
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 23.5 bits (49), Expect = 6.7
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 31 ELFAENEKLALGTSELKDANNQLRQKNDKLFTTKENLTQEKTELTE 76
ELF +++A G SEL D +QL + +++ KE +E + E
Sbjct: 402 ELFIAGKEIANGFSELNDPLDQLERFKNQV-AEKEKGDEEAQYMDE 446
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 23.5 bits (49), Expect = 6.7
Identities = 23/97 (23%), Positives = 43/97 (43%), Gaps = 7/97 (7%)
Query: 66 NLTQEKTELTEKNKVLTTEKGNLDNQLNASQKQVQALEQSQQVLENEKVELTNKI----T 121
++ EK++ K+K L K L + Q+ A ++ +QV ++ E
Sbjct: 254 SMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQN 313
Query: 122 DLSKEKENLTKANTE---LKTENDKLNHQVIALTKEQ 155
LS+ + NLT + E L D++ + +IA + Q
Sbjct: 314 RLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 23.5 bits (49), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 221 LEREIARLKSLEATDKSELDLQNCRFKSAIEDL 253
LE + L+ L++ S LDL R K A+ED+
Sbjct: 504 LEPNLQNLEFLQSFFLSMLDLAPSRDKEALEDM 536
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 23.1 bits (48), Expect = 8.7
Identities = 11/26 (42%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Query: 184 QHLTDKLKKL-ESAQKNLENSNDQLL 208
+ T++ K+ E+AQKN E+SN + L
Sbjct: 30 ERFTNRKKRFRENAQKNAESSNHETL 55
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 23.1 bits (48), Expect = 8.7
Identities = 21/82 (25%), Positives = 34/82 (40%), Gaps = 17/82 (20%)
Query: 36 NEKLALGTSELKDANNQLRQKN----------------DKLFT-TKENLTQEKTELTEKN 78
NEK T +K A+N L + + K+F +K+ L + +L EK+
Sbjct: 8 NEKKNTITRRMKIAHNSLPETDRKAHMEPKWRELADIRSKMFAESKKQLKERGIQLKEKS 67
Query: 79 KVLTTEKGNLDNQLNASQKQVQ 100
K E + +L + QVQ
Sbjct: 68 KAQQQESFEREKELMEEEFQVQ 89
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 23.1 bits (48), Expect = 8.7
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Query: 110 ENEKVELTNKITDLSKEKENLTKANTELKTEN--DKLNHQVI 149
EN + L ++I D SK+ +L + +LK + D++N+ I
Sbjct: 176 ENLSLSLFDRIKDFSKDCLDLAQYYAQLKASDFKDRINYSHI 217
>ref|NP_223730.1| putative [Helicobacter pylori J99]
Length = 182
Score = 23.1 bits (48), Expect = 8.7
Identities = 12/52 (23%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 4 FIEKCFGFYQVRKELEARISGLEDENAELFAENEKLALGTSELKDANNQLRQ 55
+I K ++ + E + ++ + +N N+KL L ELK+ N +++
Sbjct: 127 YIHKERKYFMKQNEFKKQLVPMNPDNQV----NDKLTLNLKELKEITNLIKE 174
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 23.1 bits (48), Expect = 8.7
Identities = 23/67 (34%), Positives = 29/67 (42%), Gaps = 16/67 (23%)
Query: 216 EEKTELEREIARL--------------KSLEATDKSELDLQNCRFKSAIEDLKRQ--NRK 259
+EK ELE+ IAR K L+ D L + + R S I KR N
Sbjct: 262 KEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLAISSRRDPSIIFKPKRTIGNEA 321
Query: 260 LEEENIA 266
LE ENI+
Sbjct: 322 LECENIS 328
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.304 0.124 0.313
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,429
Number of Sequences: 1491
Number of extensions: 14840
Number of successful extensions: 236
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 116
length of query: 284
length of database: 494,079
effective HSP length: 77
effective length of query: 207
effective length of database: 379,272
effective search space: 78509304
effective search space used: 78509304
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 48 (23.1 bits)