BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645204|ref|NP_207374.1| hypothetical protein
[Helicobacter pylori 26695]
(184 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223244.1| putative [Helicobacter pylori J99] 333 2e-93
ref|NP_222934.1| putative [Helicobacter pylori J99] 29 0.088
ref|NP_223513.1| putative [Helicobacter pylori J99] 27 0.26
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 27 0.26
ref|NP_223307.1| putative [Helicobacter pylori J99] 25 0.97
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 25 0.97
ref|NP_223043.1| putative [Helicobacter pylori J99] 25 0.97
ref|NP_222880.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 25 1.7
ref|NP_224195.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_223874.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_223598.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 24 2.2
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 24 2.8
ref|NP_224153.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223104.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223996.1| 4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE [H... 23 4.8
ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori... 23 4.8
ref|NP_223621.1| putative cation efflux system protein [Hel... 23 6.3
ref|NP_223619.1| putative [Helicobacter pylori J99] 22 8.2
ref|NP_223191.1| cag island protein, DNA transfer protein [... 22 8.2
>ref|NP_223244.1| putative [Helicobacter pylori J99]
Length = 183
Score = 333 bits (854), Expect = 2e-93
Identities = 172/183 (93%), Positives = 176/183 (95%)
Query: 1 MLISSSYTLSFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAP 60
M ISSSYTLSF+WLFLIFFFFKNKPLGLRFSLS ISVILSNIALKDSLSLNEFLSSFTAP
Sbjct: 1 MFISSSYTLSFVWLFLIFFFFKNKPLGLRFSLSLISVILSNIALKDSLSLNEFLSSFTAP 60
Query: 61 LSPFSCLLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMAS 120
LSPFSCLLILAYA FSC +L+KPPLETLQSYSVMLFFNLLLLTD+LGFLPFSIYHHFMAS
Sbjct: 61 LSPFSCLLILAYASFSCHILKKPPLETLQSYSVMLFFNLLLLTDILGFLPFSIYHHFMAS 120
Query: 121 LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLVK 180
LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPL LFVFFKTL L K
Sbjct: 121 LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLFLFVFFKTLYLAK 180
Query: 181 KRL 183
KRL
Sbjct: 181 KRL 183
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 28.9 bits (63), Expect = 0.088
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 80 LQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLG 139
L+ + TL + + + L + ++L F+P S+ + F+ +L L FL + LG
Sbjct: 86 LEYAGVATLMAGILQILLGYLKIGNLLKFIPQSVMYGFVNALGILLLTEQFKFLQNQNLG 145
Query: 140 VIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLV 179
V L+A+ +L+ F ++ + L+ + ++L+
Sbjct: 146 VFVLLAI--GILIIYLFPLITKKIPSNLICILAVSAIALI 183
>ref|NP_223513.1| putative [Helicobacter pylori J99]
Length = 245
Score = 27.3 bits (59), Expect = 0.26
Identities = 28/101 (27%), Positives = 49/101 (47%), Gaps = 10/101 (9%)
Query: 86 ETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFS------ALFCSSLFLSSPL-L 138
+TLQS +V+ + L +L GFLP + + F+AS+I S A+ S L + + L
Sbjct: 122 KTLQSQNVLGLYFLGVLN---GFLPCMMVYSFLASVILSHSTFMGAMLGLSFGLGTSVPL 178
Query: 139 GVIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLV 179
++ + S+ R F +L L L+V + + L+
Sbjct: 179 FLMGIFLSKISISYRKFFNLLSKGLMGVFGLYVLYMGIMLI 219
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 27.3 bits (59), Expect = 0.26
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 61 LSPFSCLLILAYALFSCRLLQKPPLETLQSYSVML 95
L+PF + +L + + +KPPLE+L+ YS +L
Sbjct: 365 LNPFE---LYPQSLVNLNIQKKPPLESLKGYSALL 396
>ref|NP_223307.1| putative [Helicobacter pylori J99]
Length = 97
Score = 25.4 bits (54), Expect = 0.97
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 134 SSPLLGVIALVALSSSLLMRSNFQILDSLLDF-PLLLFVFFKTLSL 178
++P++ ++A + +RS F+++ + LDF PL++ + K L L
Sbjct: 39 NNPIMQILARLCEPVFYFLRSRFKLVFNGLDFAPLVVVIVLKFLDL 84
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 25.4 bits (54), Expect = 0.97
Identities = 25/81 (30%), Positives = 39/81 (47%), Gaps = 5/81 (6%)
Query: 55 SSFTAPLSPFSCLLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIY 114
SSF+ S F LL L+Y +F L + ++ +M+F L+ + F + I
Sbjct: 281 SSFSPKESSFIMLLALSYFIFLQPLCGMLADKIKRTQMLMVFAITGLIVTPIVF--YGIK 338
Query: 115 HHFMASLIFSALFCSSLFLSS 135
H A+ ++ ALF L LSS
Sbjct: 339 H---ATSVYEALFYEILALSS 356
>ref|NP_223043.1| putative [Helicobacter pylori J99]
Length = 220
Score = 25.4 bits (54), Expect = 0.97
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 11/58 (18%)
Query: 92 SVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALSSS 149
S+ LF+ LL+L + HF+A IF + SLF L+G +AL+ L S
Sbjct: 145 SLALFYGLLIL----------LIPHFIAHQIFQNILSYSLFGLILLIG-LALIVLGVS 191
>ref|NP_222880.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 255
Score = 24.6 bits (52), Expect = 1.7
Identities = 37/156 (23%), Positives = 69/156 (43%), Gaps = 5/156 (3%)
Query: 26 LGLRFSLSFISVILSNIALKDSLSLNEFLSSFTA--PLSPFSCLLILAYALFSCRLLQKP 83
LG+ S+ V S + DS+S + L+ +A P+S S I+ AL +L
Sbjct: 80 LGVCASVFLQIVFASLVFATDSISFSMGLTMASAYDPISG-SQKPIVGQALLLLAILIL- 137
Query: 84 PLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIAL 143
L+ + ++LF + L LG F FS LF ++ P+L ++ L
Sbjct: 138 -LDLSFHHQIILFVDHSLKAVPLGRFVFEPELAKNIVKAFSHLFVIGFSMAFPILCLVLL 196
Query: 144 VALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLV 179
+ ++M+++ Q + FP+ + + F + L+
Sbjct: 197 SDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILI 232
>ref|NP_224195.1| putative [Helicobacter pylori J99]
Length = 197
Score = 24.3 bits (51), Expect = 2.2
Identities = 9/17 (52%), Positives = 14/17 (81%)
Query: 9 LSFIWLFLIFFFFKNKP 25
LSFI + L+FFF +++P
Sbjct: 18 LSFITIGLVFFFLRSQP 34
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 24.3 bits (51), Expect = 2.2
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 10 SFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIAL-----KDSLSLNEFLSSFTAPLSPF 64
+FI L L F + + + ++ + V++ N AL L F+ + + +
Sbjct: 172 AFIPLLLGVFAYALRKRYFKSAIFALVVLIVNTALFSGDFNKGLPSGYFIDTCLELMLLY 231
Query: 65 SCLLIL--AYALFSCRLLQKPPLETLQSYSVMLFFNLLLL---TDVLGFLPFSI 113
S LL L Y L+ L +KP L S S LF LL + D+ F P ++
Sbjct: 232 SPLLFLYYPYTLYKALLDKKPSLLAFMSASGWLFPLLLSMRQEIDLKTFAPLAL 285
>ref|NP_223598.1| putative [Helicobacter pylori J99]
Length = 493
Score = 24.3 bits (51), Expect = 2.2
Identities = 25/72 (34%), Positives = 34/72 (46%), Gaps = 13/72 (18%)
Query: 3 ISSSYTLSF--IWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAP 60
+SS+Y F I +FL + N P ++ NI +KD S E SS AP
Sbjct: 201 LSSNYYAIFALIAVFLTILWQINLPSMRKYQ---------NIGVKDFYSEQEEDSSKLAP 251
Query: 61 LS--PFSCLLIL 70
LS P S LL++
Sbjct: 252 LSLLPLSILLLI 263
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 24.3 bits (51), Expect = 2.2
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 117 FMASLIFSALFCSSLFLSSPLLGVIALVALS 147
F+ + I +++ C+SL LLG+I LV S
Sbjct: 74 FVFATIVASVLCASLSNLYVLLGIIVLVGFS 104
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 23.9 bits (50), Expect = 2.8
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 73 ALFSCRL-LQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSALFCSS- 130
ALF + L L+ + +YS + + + LG +++H F + S LF S
Sbjct: 289 ALFGASMALVNKDLKRIVAYSTLSQLGYMFVAAGLGAYAIALFHLFTHAFFKSLLFLGSG 348
Query: 131 --LFLSSPLLGVIALVALSSSLLMRSNFQILDSL 162
+ L + + AL + + + F I+ S+
Sbjct: 349 NVMHAMEDNLDITKMGALYKPMRITAVFMIIGSV 382
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 23.5 bits (49), Expect = 3.7
Identities = 11/23 (47%), Positives = 13/23 (55%)
Query: 104 DVLGFLPFSIYHHFMASLIFSAL 126
D+LG LP +IY H L F L
Sbjct: 143 DILGALPPNIYEHQEEDLDFKGL 165
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 23.5 bits (49), Expect = 3.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 53 FLSSFTAPLSPFSCLLILAYALFSC 77
FL+SF PL+ ++++ + F C
Sbjct: 19 FLTSFKKPLTQVLLIVLMVFLFFRC 43
>ref|NP_223996.1| 4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE [Helicobacter pylori J99]
Length = 294
Score = 23.1 bits (48), Expect = 4.8
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 7 YTLSFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAPLSPFS 65
+++S LF+ +F N PL + SL F+ ++ K SL F+ L+P +
Sbjct: 100 FSVSNALLFVGVSYFIN-PLAFKLSLPFLIILGGYSYFKRFSSLAHFVVGLALGLAPIA 157
>ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 492
Score = 23.1 bits (48), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 47 SLSLNEFLSSFTAPLSPFSCLLIL 70
+L +N F S F+ L+ F C+L L
Sbjct: 31 TLLINAFTSRFSRNLNVFLCMLFL 54
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 22.7 bits (47), Expect = 6.3
Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 3 ISSSYTLSFIWLFLIFFF-FKNKPLGLRFSLS 33
+S+ LS + +F I FF FK+ PL L L+
Sbjct: 857 LSTVIPLSILAIFFILFFTFKSIPLALLILLN 888
>ref|NP_223619.1| putative [Helicobacter pylori J99]
Length = 166
Score = 22.3 bits (46), Expect = 8.2
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 33 SFISVILSNIALKDSLSLNEF-LSSFTAPLS 62
S++ V L+N ALKDS L + F +P+S
Sbjct: 98 SYLKVYLNNEALKDSAPLVFVDMPGFDSPIS 128
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 22.3 bits (46), Expect = 8.2
Identities = 8/29 (27%), Positives = 18/29 (61%)
Query: 106 LGFLPFSIYHHFMASLIFSALFCSSLFLS 134
L F IY ++ +++S++ CS +F++
Sbjct: 131 LTFSSLKIYGFNISLVVYSSILCSYIFIT 159
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.335 0.147 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,078
Number of Sequences: 1491
Number of extensions: 7507
Number of successful extensions: 55
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 20
length of query: 184
length of database: 494,079
effective HSP length: 72
effective length of query: 112
effective length of database: 386,727
effective search space: 43313424
effective search space used: 43313424
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 46 (22.3 bits)