BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645209|ref|NP_207379.1| flagellar switch protein
(fliN) [Helicobacter pylori 26695]
(123 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [... 234 4e-64
ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 51 1e-08
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 27 0.22
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 25 0.65
ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helico... 25 0.85
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 24 1.1
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 24 1.1
ref|NP_223642.1| putative [Helicobacter pylori J99] 24 1.4
ref|NP_222772.1| putative [Helicobacter pylori J99] 24 1.4
ref|NP_223661.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Heli... 23 2.5
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 23 2.5
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 23 3.2
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 3.2
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 23 3.2
ref|NP_223252.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 23 3.2
ref|NP_223639.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223965.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 21 9.3
ref|NP_223230.1| putative [Helicobacter pylori J99] 21 9.3
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 21 9.3
>ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 123
Score = 234 bits (598), Expect = 4e-64
Identities = 121/123 (98%), Positives = 122/123 (98%)
Query: 1 MSETEANKLKVAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60
M ETEANKLK+AEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL
Sbjct: 1 MPETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60
Query: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSNAIVYYLA 120
QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSNAIVYYLA
Sbjct: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSNAIVYYLA 120
Query: 121 KNS 123
KNS
Sbjct: 121 KNS 123
>ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 50.8 bits (120), Expect = 1e-08
Identities = 29/104 (27%), Positives = 58/104 (54%), Gaps = 4/104 (3%)
Query: 10 KVAEKEKEKANKERELELSTY---LEEL-ICDYKNLLDMEIVFSAELGSTQIPLLQILRF 65
K ++EKE+ K E T+ LE + I + LLD+++ +G ++ L ++
Sbjct: 170 KTHKEEKEETTKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSM 229
Query: 66 EKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEI 109
+ GSV++L + + ++ V+ +VI KGEV++ + N I++ +I
Sbjct: 230 DIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDI 273
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 26.6 bits (57), Expect = 0.22
Identities = 16/56 (28%), Positives = 31/56 (54%), Gaps = 2/56 (3%)
Query: 3 ETEANKLKVAEKEKEKANKERE-LELSTYLEELICDYKNLLDMEIVFSAELGSTQI 57
+T+ N K ++ + K KE + E T L+E + ++ NL++ EI E+ S ++
Sbjct: 527 QTKENDTKEVQENETKETKEAQPKEAPTALQEFMANHSNLIE-EIKSEFEIKSVEL 581
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 25.0 bits (53), Expect = 0.65
Identities = 20/87 (22%), Positives = 36/87 (40%), Gaps = 15/87 (17%)
Query: 22 ERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESV 81
E+E L Y+ + N + +FSA L ++ L+ + +PAG +
Sbjct: 216 EKENRLPDYVIACVGGGSNAIG---IFSAFLNDKEVKLIGV------------EPAGLGL 260
Query: 82 DTFVNGRVIGKGEVMVFERNLAIRLNE 108
+T +G + KG V + N L +
Sbjct: 261 ETNKHGATLNKGRVGILHGNKTYLLQD 287
>ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 524
Score = 24.6 bits (52), Expect = 0.85
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 21 KERELELSTYLEELICDYKNLLDMEI 46
KER +E+ L+E YKN+L + +
Sbjct: 391 KERGIEIKVSLKESASPYKNMLSLTL 416
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 24.3 bits (51), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 3 ETEANKLKVAEKEKEKANKERELELSTYLEELICDYKNLL 42
E E NK+K+ E K E+E++L + + D K L
Sbjct: 76 ELENNKIKLNELSKSVGEAEQEMDLKLSIIPNLVDEKTPL 115
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 24.3 bits (51), Expect = 1.1
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 14/58 (24%)
Query: 3 ETEANKLKVAEKEKEKA-------NKER-------ELELSTYLEELICDYKNLLDMEI 46
E + LK E+ KEKA NKE EL+ +E LI + K L+D+E+
Sbjct: 78 EHKKKLLKELEQAKEKAELIISDANKEAYTITQKYELQTKMDVENLIKNSKALMDLEV 135
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 23.9 bits (50), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 1 MSETEANKLKVAEKEKEKANKERELE 26
+S +++N + + +KE K KE ELE
Sbjct: 144 LSFSQSNPIPLDKKETSKEEKEEELE 169
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 23.9 bits (50), Expect = 1.4
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 4 TEANKLKVAEKEKEKANKERELELSTYLEELICDYKN 40
TE NK+ EKE+ KE + T ++ + + KN
Sbjct: 113 TEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKN 149
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.1 bits (48), Expect = 2.5
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 9/58 (15%)
Query: 2 SETEANKLKVAEKEKE---KANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQ 56
+E A KLK+ +KEKE N + L+T LE N +D +LGS +
Sbjct: 78 NENIAEKLKIPKKEKEILQPLNANEKQVLNTALE------NNEIDARTFKPWDLGSKE 129
>ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Helicobacter pylori J99]
Length = 178
Score = 23.1 bits (48), Expect = 2.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 37 DYKNLLDMEIVFSAELGSTQIPLLQILRFEK 67
DY+NLL ++++ S + S+ + + RF K
Sbjct: 107 DYQNLLQVDLITSRAVASSSFLIEKSQRFLK 137
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 23.1 bits (48), Expect = 2.5
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 7 NKLKVAE-KEKEKANKERELELSTYLEELICDYK 39
N+ K+ E K+K+K + +E++LST + + +YK
Sbjct: 70 NEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYK 103
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 22.7 bits (47), Expect = 3.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1 MSETEANKLKVAEKEKEKANKERELELSTYLEE 33
M E + LK+ +KE ++ KE+ + LEE
Sbjct: 52 MKERILDYLKILQKENLESEKEKSQNILKELEE 84
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 22.7 bits (47), Expect = 3.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 1 MSETEANKLKVAEKEKEKANKERELELSTYLEELICDYK 39
M+E+ AN + EKE ++ + +LS+ L +LI ++
Sbjct: 849 MAESIANNTRKRIIEKEASDPKYYEKLSSLLNDLILQFR 887
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 22.7 bits (47), Expect = 3.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 9 LKVAEKEKEKANKERELELSTYLEELICDYKNLLD 43
LKV K KA K LEE++ KNL +
Sbjct: 4 LKVISKHYAKALKNHTKSDLALLEEIVVGLKNLAE 38
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 22.7 bits (47), Expect = 3.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 30 YLEELICDYKNLLDMEIVFSAELGSTQIPL 59
Y++ + Y N+LD++ + +LG + L
Sbjct: 420 YIDTIHTRYANMLDLDAKIALDLGQKNLSL 449
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 22.7 bits (47), Expect = 3.2
Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 18/86 (20%)
Query: 6 ANKLKVAEKEKEKANKERE-------LELSTYLEELI-CDYKNLLDMEIVF--------S 49
ANK +A K +E + K RE L + T +L C K+ L+ EI S
Sbjct: 370 ANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGS 429
Query: 50 AELGSTQIPLLQILRFEKGSVIDLQK 75
A+ G ++ Q + KG +++++K
Sbjct: 430 AKQGRDRV--FQAILPLKGKILNVEK 453
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 21.9 bits (45), Expect = 5.5
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 10 KVAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVF 48
+V K KE+ +RE L+ +L+++ +++L ++F
Sbjct: 44 QVKAKAKEQQKTQREKTLNGFLKKVGLKKRDMLQSTMLF 82
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 21.6 bits (44), Expect = 7.2
Identities = 8/26 (30%), Positives = 17/26 (64%)
Query: 9 LKVAEKEKEKANKERELELSTYLEEL 34
+ +A ++EKA K+ L ++LE++
Sbjct: 246 IAIARLDEEKAQKDITLAKKSFLEDI 271
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 21.2 bits (43), Expect = 9.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLA 103
Q+L+ +K + QK V + ++ G G V+ E+ L+
Sbjct: 611 QLLQQDKPPKQNHQKDTPIKVGDLIKHKIFGTGRVLGVEKGLS 653
>ref|NP_223230.1| putative [Helicobacter pylori J99]
Length = 215
Score = 21.2 bits (43), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 1 MSETEANKLKVAEKEKEKANKERELELSTYL 31
MSE+++ + ++ + K NKE E TYL
Sbjct: 72 MSESQSMQEEMQDNPKIVENKEWHKENRTYL 102
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 21.2 bits (43), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 9 LKVAEKEKEKANKERELELSTYLEELI 35
L VA K+K K K E+ T+ +EL+
Sbjct: 325 LLVAHKDKAKDLKALVSEIETHNQELL 351
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.134 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,451
Number of Sequences: 1491
Number of extensions: 5140
Number of successful extensions: 25
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 22
length of query: 123
length of database: 494,079
effective HSP length: 67
effective length of query: 56
effective length of database: 394,182
effective search space: 22074192
effective search space used: 22074192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 43 (21.2 bits)