BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644690|ref|NP_206860.1| hypothetical protein
[Helicobacter pylori 26695]
(813 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222776.1| putative [Helicobacter pylori J99] 877 0.0
ref|NP_222775.1| putative [Helicobacter pylori J99] 226 2e-60
ref|NP_222777.1| putative [Helicobacter pylori J99] 134 9e-33
ref|NP_223860.1| putative [Helicobacter pylori J99] 32 0.084
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 31 0.14
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 29 0.54
ref|NP_223162.1| putative paralog of HpaA [Helicobacter pyl... 28 0.71
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 28 0.93
ref|NP_223773.1| putative [Helicobacter pylori J99] 28 0.93
ref|NP_223411.1| putative [Helicobacter pylori J99] 28 0.93
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 27 1.6
ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [H... 27 2.1
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 27 2.1
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 27 2.7
ref|NP_223645.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_223633.1| putative [Helicobacter pylori J99] 26 3.5
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 26 3.5
ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [H... 26 4.6
ref|NP_223578.1| putative [Helicobacter pylori J99] 25 6.0
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 25 6.0
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 25 6.0
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 25 6.0
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 25 7.8
ref|NP_223408.1| putative FLAGELLAR PROTEIN [Helicobacter p... 25 7.8
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 25 7.8
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 877 bits (2266), Expect = 0.0
Identities = 435/523 (83%), Positives = 465/523 (88%), Gaps = 1/523 (0%)
Query: 212 LLSIGGDVDIESLQKYENPTIVEFRYKEKFLKDYNALSHRPFTEKNDIQVAHEAQKELSS 271
+LSIGG VD SL K+ENPTIVEFR+ +KF+ +YNAL HRPFTEKNDI+VAHEAQK +
Sbjct: 1 MLSIGGLVDDASLTKFENPTIVEFRHIKKFITEYNALDHRPFTEKNDIEVAHEAQKNAAI 60
Query: 272 AQGNHFYRFFSQLKQWAGADEKRNFRDLIEDFSLESFTNCTDFNPIEIYAYCIGRCINNM 331
+GN YRFFS+LKQWAGADEK+NFRDL EDFSLESFT+CTDFNPIEIYAYCI R INNM
Sbjct: 61 VKGNDLYRFFSKLKQWAGADEKQNFRDLEEDFSLESFTHCTDFNPIEIYAYCISRSINNM 120
Query: 332 ENGVFLKYFLSYPIKYEKHQAEKIRESFEKGLKKSLPRHVFDDEKTAKMFKVELKASEPC 391
ENGVFLKYFLSYPIKYEKHQAEKIRESFE+GLKKSLPRHVFDDEKTAK FKVEL+ASEPC
Sbjct: 121 ENGVFLKYFLSYPIKYEKHQAEKIRESFERGLKKSLPRHVFDDEKTAKTFKVELRASEPC 180
Query: 392 AYAISALKSYGFDKFAKLDKPIYYGVFDFGGGTTDFDFGKWEKSANPKFAYKMTHFSNGG 451
AYAISALKSYGF K KLDKP+YYGVFDFGGGTTDFDFGKWEK A+PKFAYKMTHFS+GG
Sbjct: 181 AYAISALKSYGFFKSEKLDKPVYYGVFDFGGGTTDFDFGKWEKRASPKFAYKMTHFSSGG 240
Query: 452 DKYLGGENLLELLAWEMYAQNFQELKAKDVVIAKPNYDRIDTQRFGSFMQNSREARLNLQ 511
DKYLGGENLLELLAWE YA+NFQ LK KD+VIAKPNYDRIDTQ FGSFMQNS RLNLQ
Sbjct: 241 DKYLGGENLLELLAWETYAKNFQTLKEKDIVIAKPNYDRIDTQLFGSFMQNSSGVRLNLQ 300
Query: 512 TIASNLRPFLEKLDANIIEAIEENEEFEIEGFEKEFKVQLLDRNGGDSPVEDFKVDYKEL 571
TIAS LRPFLE LDANIIEAIEENE FEI+GFEK+FK L DRNG ++ D KVD KEL
Sbjct: 301 TIASQLRPFLENLDANIIEAIEENENFEIKGFEKDFKAMLFDRNGVETEC-DLKVDCKEL 359
Query: 572 LNLLKDKIDDGVKNFFAGFSKVMAENIDNQCRAFHIFLGGNASKSVLVKQAFENAKEEQL 631
LNLLK KI+DGV NFFAGFSKVMAENID+QCRAFHIFLG N S+S LVKQAFENAKE+QL
Sbjct: 360 LNLLKGKIEDGVANFFAGFSKVMAENIDDQCRAFHIFLGRNVSRSALVKQAFENAKEKQL 419
Query: 632 KAYKQKTSKDDFTFILYEPLGTEASDKQILELTGEDVSNKPAYLKPTCKTGVAFGLLESR 691
K Y QKTSK+DF FI+YEPLGTE SDKQILELTGEDVSN PAYLKPTCKTGVAFGLLESR
Sbjct: 420 KDYHQKTSKNDFKFIIYEPLGTEKSDKQILELTGEDVSNTPAYLKPTCKTGVAFGLLESR 479
Query: 692 PKAGGIERPSIDFNPVFKYDLGIEREGKFHTRISRDSLKPNEY 734
KA GIE PSI NPVFKYDLGIE EGKFH +I RDSLKPNEY
Sbjct: 480 DKAQGIEMPSISSNPVFKYDLGIEIEGKFHAKIHRDSLKPNEY 522
>ref|NP_222775.1| putative [Helicobacter pylori J99]
Length = 143
Score = 226 bits (576), Expect = 2e-60
Identities = 113/139 (81%), Positives = 126/139 (90%)
Query: 6 KSLKLPIGHPLVEILCELSLNNKAVFNEEAPINFKKEVSEEEKIKFKQALRVLHAIVNNE 65
KSL+LP+GHPLVE LCELSLNNKA FNE++ NFK EVSEE+KIKFKQALRV HAIVNNE
Sbjct: 5 KSLELPLGHPLVEKLCELSLNNKAAFNEKSEPNFKDEVSEEDKIKFKQALRVFHAIVNNE 64
Query: 66 ASLRYLSDDNQKFMEGLAQADKITNEQIEKTLEIVSYSDVDVDFEAFKEMMLKVDNIAVG 125
SLRYLSD+NQKF+E LAQA KITNEQIEKTLEIVS SDVDVDFE K++ML VD++AVG
Sbjct: 65 TSLRYLSDENQKFLEDLAQAKKITNEQIEKTLEIVSDSDVDVDFEKLKKLMLNVDSVAVG 124
Query: 126 LKSYSQSQLLDLNGGHWDL 144
LKSYSQ+QLLDL+GGHWDL
Sbjct: 125 LKSYSQNQLLDLDGGHWDL 143
>ref|NP_222777.1| putative [Helicobacter pylori J99]
Length = 78
Score = 134 bits (337), Expect = 9e-33
Identities = 66/78 (84%), Positives = 72/78 (91%)
Query: 736 IFQTKEEWGGFDGLEIRYSDKSLANTNTLDIEDTQLIFIALEEHEEVDVKVCSIDSQSIK 795
+FQTKEEWGGFD LEIRYSDK+LANTNTLDI+DTQ+I IALEE EEV+VKVC +DSQSIK
Sbjct: 1 MFQTKEEWGGFDELEIRYSDKALANTNTLDIKDTQMISIALEEVEEVEVKVCCVDSQSIK 60
Query: 796 VGLFKDNQLIYESEAEKL 813
VGLFKD QLIYESE EKL
Sbjct: 61 VGLFKDGQLIYESEVEKL 78
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 31.6 bits (70), Expect = 0.084
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 197 KSTTAAYMDNNGKYRLLSIGGDVDIESLQKYENPTIVEFRYKEKFLKDYNALSHRPFTEK 256
K + Y+DNN ++R + D+E K TI+ ++ KD+ + + K
Sbjct: 81 KDERSTYLDNNIRFRAIG-----DLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSK 135
Query: 257 NDIQVAHEAQKE 268
N++ A ++ E
Sbjct: 136 NELSRAFKSLLE 147
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 30.8 bits (68), Expect = 0.14
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 175 FYARSSLKDVNKQGVVAIDFGTKSTTAAYMDNNGKYRLLSIGGDVDIESLQKYENPTIVE 234
FY + + K Q V I F +T ++ + K L +L+ ++NP I+E
Sbjct: 305 FYLKHAKKMPRNQASVKIHFNAVNTLEFFLSQD-KITL----------TLKDHQNPLILE 353
Query: 235 FRYKEKFLKDYNALSHRPFTEKNDIQVAHEAQKELS 270
K++FL+ Y L + N AH+ + E S
Sbjct: 354 THNKQEFLQPYAKLLYDAI-PNNHYNFAHQLELEAS 388
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 28.9 bits (63), Expect = 0.54
Identities = 17/42 (40%), Positives = 22/42 (51%)
Query: 736 IFQTKEEWGGFDGLEIRYSDKSLANTNTLDIEDTQLIFIALE 777
I + E G FDGL+I S N D+ED Q++ ALE
Sbjct: 671 IEEHSNEEGLFDGLKINESVLKKELKNATDLEDKQILKTALE 712
>ref|NP_223162.1| putative paralog of HpaA [Helicobacter pylori J99]
Length = 282
Score = 28.5 bits (62), Expect = 0.71
Identities = 35/144 (24%), Positives = 62/144 (42%), Gaps = 28/144 (19%)
Query: 513 IASNLRPFLEKLD---ANIIEAIEENEEFEIEGF--EKEFKVQ-------LLDRNGGDSP 560
++ NL+P+++K N I+ I E +++ F EK VQ +LD G
Sbjct: 92 VSDNLKPYIDKFQDALINQIQTIFEKRGYQVLRFQDEKALNVQDKKKIFSVLDLKGWVGI 151
Query: 561 VEDFKVDYKE----LLNLLKDKIDDGV-KNFFAGFSKVMAENIDNQCRAFHIFL------ 609
+ED K++ K+ L+ L D+ V NF+ S + + + F
Sbjct: 152 LEDLKMNLKDPNSPNLDTLVDQSSGSVWFNFYEPESNRVVHDFAVEVGTFQAITYTYTST 211
Query: 610 -----GGNASKSVLVKQAFENAKE 628
G N+SKSV+ + +N ++
Sbjct: 212 NNASGGFNSSKSVIHENLDKNRED 235
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 28.1 bits (61), Expect = 0.93
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 505 EARLNLQTIAS--NLRPFLEKLDANIIEAIEENEEFEIEGFEKEFKVQLLDRNGGDSPVE 562
EAR Q ++S L + E N+ EA + + + +K F + DR + V+
Sbjct: 431 EARSVEQYVSSPEKLDEYFELKTQNLNEAAKTELKKKWVNLQKVFSTK--DRL--EHIVQ 486
Query: 563 DFKVDYKELLNLLKDKIDDGVKNFFAGFSKVMAENIDNQCRAFHIFLGGNASKSVLVKQA 622
D +D +L L K G + ++AE++ N CR F +FL V V +
Sbjct: 487 DIVLDMAKLPRLSNGK----------GNAMLVAESVYNACRYFELFLETELKDKVAVITS 536
Query: 623 FE 624
+E
Sbjct: 537 YE 538
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 28.1 bits (61), Expect = 0.93
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 475 ELKAKDVVIAKPNYDRID--TQRFGSFMQNSREARL----NLQTIASNLRPFLEKLDANI 528
+L +D+ K N ++I+ T++ G F++ E + +L+ I S+L F EK D N
Sbjct: 50 DLNLEDLPSEKKN-EKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNA 108
Query: 529 IEAIEENEEFE 539
+ ++NE+ E
Sbjct: 109 QKDEQKNEQEE 119
>ref|NP_223411.1| putative [Helicobacter pylori J99]
Length = 48
Score = 28.1 bits (61), Expect = 0.93
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 530 EAIEENEEFEIEGFEKEFKVQLLDRN-GGDSPVEDFKVDYKE 570
+ +E+ EE E+EGFE+E + +N D ED+ DY+E
Sbjct: 6 DELEDFEEEELEGFEEEDEEYNDYKNVYDDDDYEDYNSDYEE 47
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 27.3 bits (59), Expect = 1.6
Identities = 21/71 (29%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Query: 469 YAQNFQELKAKDVVIAKPNYDRIDTQRFGSFMQNSREAR-LNLQTIASNLRPFLEKLDAN 527
YAQ +L+ V+ KP D G F Q + L+L + + L+ LEKL+
Sbjct: 769 YAQKLAKLEKVSVITYKPLKSVSDV---GEFCQTYADLENLDLSPLIARLKKQLEKLEKE 825
Query: 528 IIEAIEENEEF 538
++ NE F
Sbjct: 826 KLKLNLHNENF 836
>ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 273
Score = 26.9 bits (58), Expect = 2.1
Identities = 23/80 (28%), Positives = 37/80 (45%), Gaps = 5/80 (6%)
Query: 151 KESVTFRFDNLP---KEEIGGEEIEKNFYARSSLKDVNKQGVVAIDFGTKSTTAAYMDNN 207
K +T NLP K EI E E+ A S+ D+ +++ G AAY + +
Sbjct: 169 KSFLTHARKNLPFTAKIEIECESFEEAKNAMSAGADIVMCDNMSV--GETKEIAAYREAH 226
Query: 208 GKYRLLSIGGDVDIESLQKY 227
+ LL G++ +ES+ Y
Sbjct: 227 YPFVLLEASGNISLESINAY 246
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 26.9 bits (58), Expect = 2.1
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 107 VDFEAFKE-MMLKVDNIAVGLKSYSQSQLLDLNG-----GHWDLDVPSLSKES 153
+ E KE + LK + +GLKSY +Q D G G LD+ S K+S
Sbjct: 33 IHLEVIKEKLFLKASDSDIGLKSYISTQSTDKEGVGTINGKKFLDIISCLKDS 85
Score = 25.4 bits (54), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 767 EDTQLIFIALEEHEEVDVKVCSIDSQSIKVGLFKDNQLIYESEAE 811
E T + EE +E +K+CS S +IK+ L K+N L ++E
Sbjct: 252 EYTSSFTLGKEEFKE-GIKLCSSLSSTIKLTLEKNNALFESLDSE 295
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 26.6 bits (57), Expect = 2.7
Identities = 23/73 (31%), Positives = 31/73 (41%), Gaps = 7/73 (9%)
Query: 677 PTCKTGVAFGLLESRPKAGG-IERPSIDFNPVFKYDLGIEREGKFHTRISRD----SLKP 731
PT KT +A+GL S+ GG I+ N V Y +G R H S + +K
Sbjct: 480 PTAKTLMAYGLYRSKAVIGGVIDEMQTKVNQV--YQMGFARNFLEHNSNSNNMNGFGVKM 537
Query: 732 NEYQIFQTKEEWG 744
Q F K +G
Sbjct: 538 GYKQFFGKKRMFG 550
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.2 bits (56), Expect = 3.5
Identities = 22/96 (22%), Positives = 40/96 (40%), Gaps = 12/96 (12%)
Query: 266 QKELSSAQGNHFYRFFSQLKQWAGADEKRNFRDLIEDFSLESFTNCTDFNPIEIYAYCIG 325
Q ++ +A NHF +L++W + NF +D+ + I+ + +G
Sbjct: 754 QLKIVNAVANHFGFKQEKLQRWYEKIDTANFGYSTQDYKI-----------IKDFIDKVG 802
Query: 326 RCINNMENGVFLKYFLSYPIKYEKH-QAEKIRESFE 360
+ N+ +YF+ +P H EK R FE
Sbjct: 803 KNSINLNEQTLNEYFIHHPENILGHLSLEKTRYRFE 838
>ref|NP_223633.1| putative [Helicobacter pylori J99]
Length = 274
Score = 26.2 bits (56), Expect = 3.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 404 DKFAKLDK--PIYYGVFDFGGGTTDFDFGKWEK 434
D K+DK P + G+ DFG + +F W K
Sbjct: 199 DGMEKIDKNMPTFIGITDFGQSSLNFTIRVWAK 231
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 26.2 bits (56), Expect = 3.5
Identities = 31/97 (31%), Positives = 41/97 (41%), Gaps = 10/97 (10%)
Query: 454 YLGGENLLELLA---WEMYAQN-FQELKAKDVVIA--KPNYDRIDTQRFGSFMQNSREAR 507
YL GENL L A E YAQ + L D + A P + D F +
Sbjct: 433 YLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFRDASHSESLKE 492
Query: 508 LNLQTIASNLRPFLEKLDANIIEAIEENEEFEIEGFE 544
L L I ++ + L I+A EEN + EI+G E
Sbjct: 493 LGLAEIHDEVKDQFKDL----IKAFEENLKDEIKGVE 525
>ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [Helicobacter pylori J99]
Length = 405
Score = 25.8 bits (55), Expect = 4.6
Identities = 14/43 (32%), Positives = 23/43 (52%)
Query: 88 ITNEQIEKTLEIVSYSDVDVDFEAFKEMMLKVDNIAVGLKSYS 130
I QIE+T + + +D + E + KV + VG+KS+S
Sbjct: 312 IVKTQIEETKQALKPFLAQMDSIDYDENIAKVSIVGVGMKSHS 354
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 25.4 bits (54), Expect = 6.0
Identities = 17/64 (26%), Positives = 32/64 (49%), Gaps = 5/64 (7%)
Query: 470 AQNFQELKAKDVVIAKPNYDRIDTQRFGSFMQNSREARLNLQTIASNLRPFLEKLDANII 529
AQ +++ + PNY +QRFG F N +E L+ + + + +KL+A +I
Sbjct: 146 AQKTEQVLEQIAQFGMPNY--FGSQRFGKFNDNHKE---GLKILQNETKFAHQKLNAFLI 200
Query: 530 EAIE 533
+ +
Sbjct: 201 SSYQ 204
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 25.4 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 86 DKITNEQIEKTLEIVSYSDVDVD 108
DKIT E+I++TL + +D+D
Sbjct: 48 DKITTEEIQQTLIKTAVDKIDID 70
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/56 (26%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Query: 224 LQKYENPTIVEFRYKEKFLKDYNALSHRPFTEKNDIQVAHEAQKELSSAQGNHFYR 279
++ YEN +KE+ L +NAL F D + + LS +G F++
Sbjct: 355 VKTYENED-----FKERCLTLFNALKSMDFQAYKDFESFKKEAMRLSQLKGKDFFK 405
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 25.4 bits (54), Expect = 6.0
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 6 KSLKLPIGHPLVEILCELSLNNKAVFNEEAPI-NFKKEVSEEEKIK---FKQALRV 57
K L + PL+E +L+L+ K FN+E+ + N ++ EEEKIK F Q LR+
Sbjct: 377 KKLNQALVMPLLEKF-KLALD-KTDFNDESALENAMHQIIEEEKIKAGHFMQPLRL 430
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 25.0 bits (53), Expect = 7.8
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 568 YKELLNLLKDKIDDGVKNFFAGFSKVMAENIDNQCRAFHI----------FLGGNASKSV 617
Y E+++ +K + KN F G + + N+ NQ + FL N
Sbjct: 153 YNEMVDSIKTLSQNISKNIFQGDNNTTSANLSNQLSELNTASVYLTYMNSFLNANNQAGG 212
Query: 618 L----VKQAFENAKEEQLKAYKQK 637
+ QA+EN Q AY K
Sbjct: 213 IFQNNTNQAYENGVTAQQIAYVLK 236
>ref|NP_223408.1| putative FLAGELLAR PROTEIN [Helicobacter pylori J99]
Length = 126
Score = 25.0 bits (53), Expect = 7.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 157 RFDNLPKEEIGGEEIEKNFYARSSLKDVNKQGVVAIDFGTKSTTAAYM 204
RF + K I E+IEK Y + + D+ + + +D+ A Y+
Sbjct: 33 RFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGKVAVYL 80
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 25.0 bits (53), Expect = 7.8
Identities = 31/117 (26%), Positives = 48/117 (40%), Gaps = 14/117 (11%)
Query: 435 SANPKFAYKMTHFSNGGDKYLGGENLLEL---LAWEM--YAQNFQELKAKDVVIAKPNYD 489
+A PK + N + +G ++LE LA E Y QNF+ + +V
Sbjct: 202 AAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIV------- 254
Query: 490 RIDTQRFGSFMQNSREARLNLQTIASNLRPFLEKLDANIIEAIEENEEFEIEGFEKE 546
I G +N AR+N + S + E D N + E+N E + EG K+
Sbjct: 255 NILAPIVGG--KNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKK 309
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 920,170
Number of Sequences: 1491
Number of extensions: 47513
Number of successful extensions: 202
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 32
length of query: 813
length of database: 494,079
effective HSP length: 85
effective length of query: 728
effective length of database: 367,344
effective search space: 267426432
effective search space used: 267426432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)