BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645213|ref|NP_207383.1| ferrodoxin-like protein
[Helicobacter pylori 26695]
(113 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 231 3e-63
ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helico... 35 5e-04
ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori... 30 0.013
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 28 0.084
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 27 0.11
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 24 0.93
ref|NP_223625.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_222983.1| Ferredoxin [Helicobacter pylori J99] 23 1.6
ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS... 23 1.6
ref|NP_222847.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_223923.1| putative [Helicobacter pylori J99] 22 3.5
ref|NP_222801.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_223555.1| Hydrogenase expression/formation protein [... 22 6.0
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 22 6.0
ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99] 22 6.0
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 21 7.9
>ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 113
Score = 231 bits (590), Expect = 3e-63
Identities = 111/113 (98%), Positives = 112/113 (98%)
Query: 1 MAKMSAPDGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCV 60
MAKM+APDGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCV
Sbjct: 1 MAKMNAPDGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCV 60
Query: 61 QCELHCPDFAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILEGRDK 113
QCELHCPDFAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILEGR K
Sbjct: 61 QCELHCPDFAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILEGRGK 113
>ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 130
Score = 35.0 bits (79), Expect = 5e-04
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 2 AKMSAPDGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPE 54
A + + +G V+ CKGC +CV VCP + + +E++ A +P+
Sbjct: 71 AAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQ 123
Score = 28.1 bits (61), Expect = 0.064
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 46 KVAKVAYPES-CIGCVQCELHCPDFAIYVADRK 77
+VAK + + CI C C ++CPD AI + K
Sbjct: 47 RVAKPVHNNNICINCFNCWVYCPDAAILSREGK 79
>ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 220
Score = 30.4 bits (67), Expect = 0.013
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 17 DRCKGCDICVSVCPAGVLGMGIEK-ERVLGKVAKVAYP-ESCIGCVQCELHCPDFAIYVA 74
+RC GC +C +C + + + K E K+ CI C C CP+ AI +
Sbjct: 80 ERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMG 139
Query: 75 DR 76
+R
Sbjct: 140 NR 141
Score = 26.6 bits (57), Expect = 0.19
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 14 VNEDRCKGCDICVSVCPAGVLGMG 37
+N RC C +C VCP + MG
Sbjct: 116 INLGRCIYCGLCAEVCPELAIVMG 139
Score = 23.5 bits (49), Expect = 1.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 54 ESCIGCVQCELHCPDFAIYVADRK 77
E CIGC CE C I + K
Sbjct: 80 ERCIGCGLCEKICTSNCIRIITHK 103
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 27.7 bits (60), Expect = 0.084
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 9 GVAVWVNEDRCKGCDICVSVCPAGVL 34
G+ +V C C C++VCP G L
Sbjct: 193 GIISFVGSVPCYDCGECIAVCPVGAL 218
Score = 22.3 bits (46), Expect = 3.5
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 42 RVLGKVAKVAY-PESCIGCVQCELHCPD 68
+ L AK Y P CI C +C C D
Sbjct: 128 KALDSWAKALYDPNLCIMCERCVTTCKD 155
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 27.3 bits (59), Expect = 0.11
Identities = 15/52 (28%), Positives = 22/52 (41%), Gaps = 15/52 (28%)
Query: 16 EDRCKGCDICVSVCPAGV-LGMGIEKERVLGKVAKVAYPESCIGCVQCELHC 66
E+ C C CV VCP + + G++ E CI C++C C
Sbjct: 246 ENECVNCLHCVQVCPTHIDIRKGLQLE--------------CINCLECVDAC 283
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 24.3 bits (51), Expect = 0.93
Identities = 17/69 (24%), Positives = 28/69 (39%), Gaps = 5/69 (7%)
Query: 46 KVAKVAYP-----ESCIGCVQCELHCPDFAIYVADRKDFKFAKVSKEAQERSEKVKANKY 100
K K YP + C+ C CE CP + + R+ + + +ER
Sbjct: 531 KNLKSIYPIEEHLDMCMECGFCERICPSKDLSLTPRQRIVIHREVERLKERVSHGHDEDQ 590
Query: 101 MLLEETILE 109
+LL+E + E
Sbjct: 591 VLLDELLKE 599
Score = 22.7 bits (47), Expect = 2.7
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 19 CKGCDICVSVCPAGV 33
C C +C ++CP G+
Sbjct: 608 CAVCHMCSTLCPLGI 622
Score = 22.3 bits (46), Expect = 3.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 17 DRCKGCDICVSVCPAGVLGM 36
D C C C +CP+ L +
Sbjct: 544 DMCMECGFCERICPSKDLSL 563
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 23.9 bits (50), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 40 KERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVA 74
KE + ++A +A+ ESC G + P IY A
Sbjct: 85 KENLGYEMAGIAWKESCAGTYKINFSDPSAGIYHA 119
>ref|NP_222983.1| Ferredoxin [Helicobacter pylori J99]
Length = 84
Score = 23.5 bits (49), Expect = 1.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 17 DRCKGCDICVSVCPAGVLGMG 37
D C CD C CP+ + G
Sbjct: 7 DECIACDACREECPSEAIEEG 27
Score = 23.5 bits (49), Expect = 1.6
Identities = 9/22 (40%), Positives = 10/22 (44%)
Query: 54 ESCIGCVQCELHCPDFAIYVAD 75
+ CI C C CP AI D
Sbjct: 7 DECIACDACREECPSEAIEEGD 28
>ref|NP_222908.1| putative FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 339
Score = 23.5 bits (49), Expect = 1.6
Identities = 11/41 (26%), Positives = 19/41 (45%)
Query: 69 FAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILE 109
F++ + KD +SKE + E + Y+ +EE E
Sbjct: 30 FSVVLVGDKDKATPFISKELASKVEMIHTQDYIKMEEAATE 70
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 22.7 bits (47), Expect = 2.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 55 SCIGCVQCELHCP 67
SCI C C HCP
Sbjct: 313 SCIRCGTCLNHCP 325
>ref|NP_223923.1| putative [Helicobacter pylori J99]
Length = 245
Score = 22.3 bits (46), Expect = 3.5
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 60 VQCELHCPDFAIY--VADRK---DFKFAKVSKEAQERSEKVKANKYMLLEETIL 108
V+ EL D+AI V D D FAK +K +QE+ KV N E I+
Sbjct: 171 VRRELVAKDYAIVLQVGDTLHDFDAIFAKDAKNSQEQQAKVLQNAQKFGTEWII 224
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.9 bits (45), Expect = 4.6
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 72 YVADRKDFKFAKVSKEAQERSEKVKANKYMLL 103
Y D FAK+S+ E + K+K N + L
Sbjct: 158 YRKDWSTMNFAKLSENFVEEALKLKPNNQVFL 189
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 242
Score = 21.6 bits (44), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 73 VADRKDFKFAKVSKEAQERSEKVKANK 99
+AD KDFKF V + Q + + K
Sbjct: 66 LADFKDFKFCVVEGDLQTNRDADRLRK 92
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 21.6 bits (44), Expect = 6.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 80 KFAKVSKEAQERSEKVKANKYMLLEETILE 109
+ AK+S A ++SE + A + E +LE
Sbjct: 375 ELAKLSYNANQKSEDIGARRLHTTIEKVLE 404
>ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99]
Length = 245
Score = 21.6 bits (44), Expect = 6.0
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 3 KMSAPDGVAVWVNEDRCKGCDICVSVC 29
K PD DRC C C++ C
Sbjct: 138 KRVEPDEAQEVFELDRCIECGCCIASC 164
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 21.2 bits (43), Expect = 7.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 83 KVSKEAQERSEKVKANKYML 102
K SKE QER+ K+ N+ ++
Sbjct: 66 KASKEMQERALKLLKNQALI 85
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,735
Number of Sequences: 1491
Number of extensions: 4182
Number of successful extensions: 28
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 23
length of query: 113
length of database: 494,079
effective HSP length: 66
effective length of query: 47
effective length of database: 395,673
effective search space: 18596631
effective search space used: 18596631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)