BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645216|ref|NP_207386.1| ferredoxin oxidoreductase,
gamma subunit [Helicobacter pylori 26695]
(186 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 345 3e-97
ref|NP_222787.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 24 2.2
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 24 2.8
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 3.7
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 23 3.7
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 23 6.3
ref|NP_223752.1| Pyruvate ferrodoxin oxidoreductase [Helico... 22 8.3
ref|NP_223724.1| putative [Helicobacter pylori J99] 22 8.3
ref|NP_223615.1| putative [Helicobacter pylori J99] 22 8.3
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 22 8.3
>ref|NP_223257.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 184
Score = 345 bits (886), Expect = 3e-97
Identities = 178/183 (97%), Positives = 182/183 (99%)
Query: 1 MEAQLRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLDRDEII 60
MEAQLRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLD+DEII
Sbjct: 1 MEAQLRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLDKDEII 60
Query: 61 FPYAKEGEIDFMLSVAQISYNQFKSDIKQGGIVVIDPNLVTPTKEDEEKYQIYKIPIISI 120
FPYAKEGEIDFMLSVAQISYNQFKSDIK+GGIVVIDPNLVTPTKEDEEKYQ+YKIPIISI
Sbjct: 61 FPYAKEGEIDFMLSVAQISYNQFKSDIKKGGIVVIDPNLVTPTKEDEEKYQLYKIPIISI 120
Query: 121 AKDEVGNIITQSVVALAITVELTKCVEEIIVLDTMLKKVPAKVADTNKKAFEIGKKHALE 180
AKDEVGNIITQSVVALAITVELTKCVEE IVLDTMLKKVPAKVA+TNKKAFEIGKKHALE
Sbjct: 121 AKDEVGNIITQSVVALAITVELTKCVEENIVLDTMLKKVPAKVAETNKKAFEIGKKHALE 180
Query: 181 ALK 183
ALK
Sbjct: 181 ALK 183
>ref|NP_222787.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 170
Score = 24.3 bits (51), Expect = 2.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 142 LTKCVEEII---VLDTMLKKVPAK-VADTNKKAFEIGKKHA 178
L K +EII +LD+ + + AK VA+ K +EIG +HA
Sbjct: 63 LFKEEKEIIAVNILDSEVIHIQAKSVAEVAKICYEIGNRHA 103
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 23.9 bits (50), Expect = 2.8
Identities = 26/107 (24%), Positives = 43/107 (39%), Gaps = 19/107 (17%)
Query: 16 LLAGEILAEAKIVSGGYGTKTSTYTSQVRGGP-----------TKVDILLDRDEIIFPYA 64
+L GE+L +AK+V ++T +G ++ I+LD P
Sbjct: 240 ILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGANVGKRMAIVLDNKVYSAPVI 299
Query: 65 KE------GEIDFMLSVAQIS--YNQFKSDIKQGGIVVIDPNLVTPT 103
+E G+I SVAQ S +S I V++ +V P+
Sbjct: 300 RERIGGGSGQISGNFSVAQASDLAIALRSGAMNAPIQVLEKRIVGPS 346
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.5 bits (49), Expect = 3.7
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 3/44 (6%)
Query: 141 ELTKCVEEIIVLDTMLKKVPAKVADTNKKAFEIGKKHALEALKV 184
E K + E I L T+L+ + +V DTN A KK ++ LKV
Sbjct: 1572 EAIKDLLEEIDLITLLQSLKEEVKDTNSDA---KKKKLIKRLKV 1612
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 23.5 bits (49), Expect = 3.7
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 171 FEIGKKHALEALKV 184
+E+GK+H LE +K+
Sbjct: 286 YEVGKRHHLETIKI 299
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 22.7 bits (47), Expect = 6.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 154 TMLKKVPAKVADTNKKAFEIGKKHALEALKVRA 186
T+L KV + +A +K + + +L +K+RA
Sbjct: 104 TLLLKVASGLAKNQQKVLYVSGEESLSQIKMRA 136
>ref|NP_223752.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 186
Score = 22.3 bits (46), Expect = 8.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 4 QLRFTGVGGQGVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLDRDEIIFPY 63
Q+R+ GQG + + LA+ +G ++Y S RG +D DE I +
Sbjct: 3 QIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVD-DEPILNH 61
Query: 64 AKEGEIDFMLSV 75
+ + D++L +
Sbjct: 62 ERFMQPDYVLVI 73
>ref|NP_223724.1| putative [Helicobacter pylori J99]
Length = 226
Score = 22.3 bits (46), Expect = 8.3
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 58 EIIFPYAKEGEIDFMLSVAQISYNQFKSDIKQGGIVVIDPNLVTPTKEDEEKYQIYKIPI 117
E + Y K +DF S +D ++G I+ + + ++ +IY+IP+
Sbjct: 153 EALKAYPKASVLDFNGETLPAS-----ADFEKGVIIGPEGGFSEQERGYFKEREIYRIPL 207
Query: 118 ISIAKDEVGNIITQSVVAL 136
+ K E + S+ +
Sbjct: 208 DMVLKSESACVFVASIAQI 226
>ref|NP_223615.1| putative [Helicobacter pylori J99]
Length = 226
Score = 22.3 bits (46), Expect = 8.3
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 28 VSGGYGTKTSTYTSQVRGGPTKVDILLDRDEIIFPYAKEGEIDFMLSVAQ 77
V GG+ ST+ + + G K+ ++ I Y +GE + ++ +Q
Sbjct: 99 VGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGEREVLMGFSQ 148
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 22.3 bits (46), Expect = 8.3
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 14 GVLLAGEILAEAKIVSGGYGTKTSTYTSQVRGGPTKVDILLD 55
GV++ GE L + + +SG + S+V GG + +L+
Sbjct: 225 GVVIKGESLLDERALSGESMPVNVSERSKVLGGSLNLKAVLE 266
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.136 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,417
Number of Sequences: 1491
Number of extensions: 7853
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 10
length of query: 186
length of database: 494,079
effective HSP length: 73
effective length of query: 113
effective length of database: 385,236
effective search space: 43531668
effective search space used: 43531668
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)