BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645217|ref|NP_207387.1| type III restriction enzyme
R protein (res) [Helicobacter pylori 26695]
(1001 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 395 e-111
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 54 2e-08
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 35 0.012
ref|NP_224003.1| putative [Helicobacter pylori J99] 34 0.021
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 33 0.047
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 32 0.061
ref|NP_223623.1| putative [Helicobacter pylori J99] 32 0.10
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 31 0.18
ref|NP_223971.1| putative [Helicobacter pylori J99] 31 0.18
ref|NP_223405.1| putative [Helicobacter pylori J99] 31 0.18
ref|NP_222979.1| putative [Helicobacter pylori J99] 29 0.52
ref|NP_222886.1| putative [Helicobacter pylori J99] 29 0.52
ref|NP_223659.1| putative [Helicobacter pylori J99] 28 0.88
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 28 0.88
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 28 1.2
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 28 1.2
ref|NP_222937.1| putative [Helicobacter pylori J99] 28 1.2
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 28 1.2
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 28 1.5
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 28 1.5
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 2.0
ref|NP_223644.1| putative [Helicobacter pylori J99] 27 2.0
ref|NP_223464.1| putative [Helicobacter pylori J99] 27 2.0
ref|NP_222887.1| sialic acid synthase [Helicobacter pylori ... 27 2.0
ref|NP_223632.1| putative [Helicobacter pylori J99] 27 2.6
ref|NP_223330.1| putative [Helicobacter pylori J99] 27 3.4
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 27 3.4
ref|NP_223013.1| putative [Helicobacter pylori J99] 27 3.4
ref|NP_224173.1| putative [Helicobacter pylori J99] 26 4.4
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 26 4.4
ref|NP_223088.1| putative [Helicobacter pylori J99] 26 4.4
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 26 5.7
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 26 5.7
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 5.7
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 25 7.5
ref|NP_223470.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylo... 25 7.5
ref|NP_223446.1| putative [Helicobacter pylori J99] 25 7.5
ref|NP_223149.1| putative [Helicobacter pylori J99] 25 7.5
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 25 7.5
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 25 9.8
ref|NP_223387.1| putative [Helicobacter pylori J99] 25 9.8
ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 25 9.8
ref|NP_222991.1| putative [Helicobacter pylori J99] 25 9.8
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 25 9.8
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 395 bits (1014), Expect = e-111
Identities = 318/1036 (30%), Positives = 518/1036 (49%), Gaps = 137/1036 (13%)
Query: 24 FEKQDYQQECIYNIITLLDGFDFKR--HDALNLKDCLNQFHAACEIPVKNVSG------- 74
F++ DYQ++C I+ + G D + +D + + + + A ++ ++N+
Sbjct: 5 FKRLDYQEQCRDQILGVFKGIDLREPENDIQRIANPVFEIGAIKDLLLENIENLRSKQKI 64
Query: 75 ---------KLNVDVLMETGTGKTFTYLNLIFALHKAYGQNKFIIFVPRKAILESVKQNI 125
LN D+LMETGTGKTF +L ++ALHK Y +KFI+ P AI V ++I
Sbjct: 65 TQGSVGINQSLNCDILMETGTGKTFCFLECVYALHKNYHLSKFIVLAPSNAIKLGVLKSI 124
Query: 126 RLTKDYFYLEFKR-HLKTYTYEGVKSPSNIINHYIKNQDELSVLLLTNSAIDKEGNILNK 184
+T+++F E+ HL++Y ++ + + + VL++T SA +KE N +N+
Sbjct: 125 EITREFFKSEYSNTHLESY--------EDVERFILASNHKCCVLVMTFSAFNKEKNTINQ 176
Query: 185 N---SENLFN-TKSIFENIADLKPISIIDEPHLLKGEAFGKYFGKIGALY-FRFGATFAK 239
+ + NLFN KS + +A ++PI I+DEPH G+ KY ++ AL RFGATF K
Sbjct: 177 SCLENTNLFNGAKSYMQALASMRPIVIMDEPHRFLGDKTKKYLEQLNALITLRFGATF-K 235
Query: 240 EKEHALSNVAFCLDSISAFRNYLVKQIRIHSVMQDAQSPFLLNADSKSAKIAFYKAGILK 299
+ H N+ + LDS AF LVK I + SV + + L +K A L+
Sbjct: 236 DDYH---NLIYALDSKKAFDCALVKSISVASVGESDEYFLELKEANKKQNEATINYTTLE 292
Query: 300 Q----ITLSKGEDLGKIN--ASFNGVSLVKTAKDKAYLSNGATL---EKASYK-LAQDEI 349
+ + ++LG + ++ + K K + NG L +K + L + E
Sbjct: 293 NKIQSVKVKTHDNLGALTHISALEDYIVEKITKTEIRFLNGFNLLLDQKEPFSHLLEGEQ 352
Query: 350 SALLEKAIDLHFEKEAFLFDQNIKALSLFFIPKIEDFRQIDNKGTPFIKTEFERLYKLKR 409
+L++AI HFE+E LF + IKAL + FI + + +N+ + FE+LY+ K
Sbjct: 353 EVMLKEAIKSHFEREEGLFKKGIKALCMVFINGVNSYLS-ENEKPAKLALLFEKLYQQKL 411
Query: 410 ASILARENLSPSYKEYLKRDFDESGNLRVHQGYFSGDSVALNKGKKESKKEDIEANDIKM 469
+L ++ L +Y+ YL+R D L+VH GYF+ +SKKE E I +
Sbjct: 412 EEVL-KKPLDENYRAYLERTKDAI--LKVHGGYFA-----------KSKKESDEVQVIAL 457
Query: 470 ILSEKEKLLSFQTPLRFIFSVWALQEGWDNPNIFTLIKLANSTSETSRHQQVGRGLRIAI 529
IL EKEKLLSF + LRFIFS WALQEGWDNPN+ T+ KLA S+S ++ QQ+GRGLR+A+
Sbjct: 458 ILKEKEKLLSFDSDLRFIFSQWALQEGWDNPNVMTICKLAPSSSNITKLQQIGRGLRLAV 517
Query: 530 NQEGKRVTHGFLKGNDNAFYKINYLDMLVSGEEVGFIEGLQKEIEASSFIGGGNALDRED 589
N +G+R+T F +N L ++V E F+ +Q+EI S I E+
Sbjct: 518 NDKGERITK-----EHADFDFVNELVVIVPQVEGDFVGAIQQEISEHSLI--KQVFSAEE 570
Query: 590 LAKLGLNEREINKLFVEL-------ENSNALEFDETNNAYKII--APICETMQNNE---- 636
L K G+ ++ + E E ++ F T N + + P E +++ +
Sbjct: 571 LEKSGMVKKGYYGVLFETLEGLGFGEKTDDENFKLTLNQNEFLKKEPELEKLKDEKYLDF 630
Query: 637 ERIKDFLSDEEYHAVLSAFKMAENPTNKRDQIINANQPQEKVKIRQNLAKEFKELWQTIN 696
E++KDFL D ++ F++ NK + + EK+KI + K+F+ LW +N
Sbjct: 631 EKLKDFLKDR----LIGHFRV----RNKNE------RKTEKIKINKENFKKFETLWAGLN 676
Query: 697 AQSQLSYQNIQKTKLIESIAKAFNES-HVSAEVI------KFESKRYDPQTNRIITEQSS 749
Q++++Y I LI+ I K N S +VS++++ K E+ + +T + +
Sbjct: 677 HQARIAYA-IDSESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMGNNAKTEIFERKSAC 735
Query: 750 TLKIRDYANALQKEINALLLDFAKDERLPLKFTLELYNALNKEHFTNSPKKAFKLLKGII 809
+ ++ +AL ++ AK LE + + ++ K L+ +
Sbjct: 736 VWSLHEFISALSNKVKLSFKSVAK--------VLENIDENKFNEIKKNEQEGLKRLEELF 787
Query: 810 KDKLHENLLSCVSYGFCQNAFSNTAFDKTDPLYCEDGSPKNEI------EKHKIGKYKSA 863
+ +++N+ +SY + N K D Y E G + + +K++I K SA
Sbjct: 788 LEIIYQNIKDKISYQMRETTIKNR---KNDAFYDEKGEIREFLDGSLGADKYEI-KNSSA 843
Query: 864 QTPSPNYLYETII-YDSKIEEEVSEEGVQTLEGKSIEVFAKLPKFKIPTPY-KNYEPDFA 921
Q LYE + DS+IE++ EE T I VF KLP+ KIP + Y PDF
Sbjct: 844 Q---EKCLYENFMQVDSEIEKDTIEESNDT----KIIVFGKLPRVKIPIGLNQTYSPDFG 896
Query: 922 YLLKDEKGAKIFFVCETKGYEKESDIPPDEKRKIEYAKKFFETLSQNLKNAKKEIRVVFA 981
Y++ + K+ V ETKG +K+S++ P+EKRKI AKKFFE L K+ + + +
Sbjct: 897 YVV-ENNDKKVLLVVETKGVDKKSELRPEEKRKISTAKKFFEALK------KQGVNIEYK 949
Query: 982 TRINKQDLFNTLKNAL 997
T++N L + L
Sbjct: 950 TKLNNDQLSALINEVL 965
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 53.9 bits (128), Expect = 2e-08
Identities = 101/460 (21%), Positives = 168/460 (35%), Gaps = 98/460 (21%)
Query: 82 METGTGKTFTYLNLIFALHKAYGQNKFIIFVPRKAILESVKQNIRLTKDYFYLEFKRHLK 141
M TG+GKT LI +K QN FI FV +ILE K N + YL +
Sbjct: 4 MATGSGKTLVMAGLILECYKQGYQN-FIFFVNSASILEKTKLNFTDSVSSKYLFSENINI 62
Query: 142 TYTYEGVKSPSNIINHYIKNQDELSVLLLTNSAIDKEGNILNKNSENLFNTKSIFENIAD 201
+KS +N+ N+ + + + S I ++ + EN E++ D
Sbjct: 63 NDENTEIKSINNL------NESHNNAINIYFSTIQGLFSLFTRAKENAIT----LEDLKD 112
Query: 202 LKPISIIDEPHLLKGEAFGKYFGKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFRNY 261
K + + DE H L E K + A EK + S V L+
Sbjct: 113 QKLVFLADEAHHLNTETKKK-----------LNDSEASEKRNWESVVKLALEQ------- 154
Query: 262 LVKQIRIHSVMQDAQSPFLLNADSKSAKIAFYKAGILKQITLS-KGEDLGKINASFNGVS 320
+K + + A I K+ ++ K E+L + + S
Sbjct: 155 -----------------------NKDNLLLEFSATIPKEKSVEDKYENLKVVTYTLKQFS 191
Query: 321 LVKTAKDKAYLSNGATLEKASYKLAQDEISALLEKAIDLHFEKEAFLFDQNIKALSLFFI 380
K K+ LS ++ + +S+L ++ + H E N K LF
Sbjct: 192 EDKFCKNIYSLSYEN--KELETRFLGACVSSLYKELLAQHHNIE------NFKPCILFKS 243
Query: 381 PKIEDFRQIDNKGTPFIKT----EFERLYKLKR-------ASILARENLSPSYKEYLKRD 429
+IE+ ++ + F++ + E + R S +N +P+ L+
Sbjct: 244 ERIEESKKNQERFNAFLENLSFLDLENFFNHSRNAFFKAAKSFFDEQNHTPNLVALLQNK 303
Query: 430 FDESGNLRVHQGYFSGDSVALNKGKKESKKEDIEANDIKMILSEKEKLLSFQTPLRFIFS 489
F ES + + +KE +K + N ++ P R IFS
Sbjct: 304 FKESVQINTNN-------------EKELEKSMLLLNSLE----------DRDNPKRVIFS 340
Query: 490 VWALQEGWDNPNIFTLIKLANSTSETSR---HQQVGRGLR 526
V L EGWD N+F +++L N ++ Q +GRG R
Sbjct: 341 VDKLNEGWDVLNLFDIVRLKNKANQKDTIKDAQLIGRGAR 380
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 34.7 bits (78), Expect = 0.012
Identities = 54/256 (21%), Positives = 106/256 (41%), Gaps = 29/256 (11%)
Query: 567 EGLQKEIEASSFIGGGNALDREDLAKLGLNEREINKLFVELEN-SNALEFDETNNAYKII 625
+ L+KE EA RE + ER N+ LEN +NA+ + + K +
Sbjct: 146 KALEKEKEAKEQAQKAQKDKREKRKE----ERAKNR--ANLENLTNAMSNPQNLSNNKNL 199
Query: 626 APICETMQNNEERIKDFLSDEEYHAVLSAFKMAENPTNKRDQIINANQPQEKVKIRQNLA 685
+ + + + NE + L D + A +A K E K+ + + ++K+ I+ + +
Sbjct: 200 SELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDKS 259
Query: 686 KEFKE-----------LWQT--INAQSQLSYQNIQKTKLIESIAKA-------FNESHVS 725
++ E W+T + ++ YQ I + ++ A A + + H
Sbjct: 260 QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEV 319
Query: 726 AEVIKFE-SKRYDPQTNRIITEQSSTLKIRDYANALQKEINALLLDFAKDERLPLKFTLE 784
+ VI+ E KR + + R + +Q + L Y N + N +++ K K L+
Sbjct: 320 SSVIEEELKKREEAKRQRELIKQEN-LNTTAYINRVMMASNEQIINKEKIREEKQKIILD 378
Query: 785 LYNALNKEHFTNSPKK 800
AL ++ N+ K+
Sbjct: 379 QAKALETQYVHNALKR 394
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 33.9 bits (76), Expect = 0.021
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 82 METGTGKTFTYLNLIFALHKAYGQNKFIIFVPRKAILESVKQNIRLTKDY-----FYLEF 136
M TG+GKT + L+ L A G +P+K I+ N L K + Y
Sbjct: 124 MATGSGKTIVIIKLVELLSVAMGMG----LIPKKNIM-FFSANEHLIKQFEKEIEKYNRN 178
Query: 137 KRHLKTYTYEGVKSPSNIINHYIKNQDELSVLLLTNSAIDKEGNILNKNSENLFNTKSIF 196
K + K ++ +KS N + + + L D + ++ ENL N K +
Sbjct: 179 KDYSKQIDFKNLKSVKNKDFYRAPKDSLMKEIALFYYRADLMSD--EESKENLLNYKDCW 236
Query: 197 ENIADLKPISIIDEPHL-----LKGEAFGKYFGKIGALYFRFGATFAKEKE 242
+N + I+DE H K +A G L F F ATF +E +
Sbjct: 237 DNGEN---YVILDEAHKGNKTESKRQAIFSLLSLKGFL-FNFSATFTEESD 283
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 32.7 bits (73), Expect = 0.047
Identities = 22/76 (28%), Positives = 35/76 (45%), Gaps = 4/76 (5%)
Query: 583 NALDREDLAKLGLNEREINKLFVELENSNALEFDETNNAYKIIAPICETMQNNEERIKDF 642
N + ++D +G NE +LF +N+ F++ + K + IC N + I DF
Sbjct: 360 NEISKKD--NVGTNETASKELFKLFDNNKIFNFNKPVSLIKYLISICSNNTNEGDIILDF 417
Query: 643 L--SDEEYHAVLSAFK 656
S HAVL + K
Sbjct: 418 FAGSGTTAHAVLESNK 433
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 32.3 bits (72), Expect = 0.061
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 663 NKRDQIINANQPQEKVKIRQNLAKEFKE-----LWQTINAQSQLSYQNIQKTKLIESIAK 717
NK D I +P+ KI+Q L + KE WQ + + + ++ +L+E+ K
Sbjct: 15 NKCDNIALIIKPE---KIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQK 71
Query: 718 AFNESHVSAEVIKFESKRYDPQTNRIITEQSSTLK 752
N S E+ + D T ++ E++ TL+
Sbjct: 72 MKNSLDESVELFELAQNDSDEVTLSLLYEEAPTLE 106
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 31.6 bits (70), Expect = 0.10
Identities = 40/150 (26%), Positives = 65/150 (42%), Gaps = 25/150 (16%)
Query: 553 YLDMLVSGEEVGF-IEGLQKEIEASSFIGGGNALDRE---DLAKLGLNEREINKLFVELE 608
YLD L + +G E ++ E EA F LDR D+ L + ++N +
Sbjct: 226 YLDHLHDVKVIGLDFEYVRLEPEALKF-----KLDRSLYVDILDLTAKDYQVNAKLANRD 280
Query: 609 NSNALEF--------DETNNAYKIIAPICETMQNNEERIKDFLSDEEYHAVLSAFKMAEN 660
NA EF TN + ++ P+ T +N ++ K FL L + +A+N
Sbjct: 281 VFNAFEFGIGSESYNSSTNLSIEVHIPLPVTPKNIYQKRK-FLD-------LQSGTLAQN 332
Query: 661 PTNKRDQIINANQPQEKVKIRQNLAKEFKE 690
KR+ INAN ++K ++ + KE
Sbjct: 333 EVMKRNIRINANSYLNQLKTKEAYIETQKE 362
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 30.8 bits (68), Expect = 0.18
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 771 FAKDERLPLKFTLELYNALNKEHFTNSPKKAFKLLKGIIKDKLHENLLSCVSYGFCQNA 829
F+ + +L + ++ A N + + SPK F+++ K+ E L+ V YG +NA
Sbjct: 459 FSNEGKLTTPYLVQRETAPNGDIYIPSPKPTFQVISPKSARKMKETLIKVVRYGTGKNA 517
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 30.8 bits (68), Expect = 0.18
Identities = 61/285 (21%), Positives = 123/285 (42%), Gaps = 59/285 (20%)
Query: 146 EGVKSPSNIINHYIKNQDELSVLLLTNSAIDKEGNILNKNSENLFNTKSIFENIA-DLKP 204
E ++ N++++ NQD+L + NS + + N + L +T ++ + A +L+
Sbjct: 46 ESLRIYQNVLSN---NQDQLKEIKKANSTLTSQRRFFNASQIRLMDTDALLKQSALELEK 102
Query: 205 ISIIDEPHLLKGEAFGKYFGKIGALY------FRFGATFAKEKEHAL-----SNVAFCLD 253
+ + E HL + + + AL+ + G +E +AL +N F L
Sbjct: 103 LQAL-EKHLKESMEHERLIKESQALFLQEHCPYLSGVKNLEEASNALEVQEKNNALFLLK 161
Query: 254 SISAFR-----------NYLVKQIRIHSVMQDAQS-------PFLLNADSKSAKIAFYKA 295
F N L Q+ + + +QD QS L+N D ++ YKA
Sbjct: 162 EPKLFHLLSRLDLMSALNALCDQV-LENEIQDQQSHNKTLEYNALMNHDFQA-----YKA 215
Query: 296 GILKQITLSKGEDLGKINASFNGVSL-------VKTAKDKAYLSNGATLEKASYKLAQDE 348
LK+I K + +I A + + ++T K + +L + L+ + +L Q
Sbjct: 216 MRLKKI---KNKLQSQIQAKEDALKTFLPLEKRLETLKSR-FLCDKENLKSCANQLQQRY 271
Query: 349 ISALLEKAIDL-----HFEKEAFL---FDQNIKALSLFFIPKIED 385
+AL+E+ +L + EK A + ++ +K L++ F+ ++ +
Sbjct: 272 QNALIERDKELKNAKNNKEKHALILANYEHTLKTLNIEFLSELSE 316
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 30.8 bits (68), Expect = 0.18
Identities = 40/206 (19%), Positives = 85/206 (40%), Gaps = 15/206 (7%)
Query: 582 GNALDREDLAKLGLNEREINKLFVELENSNALEFDETNNAYKIIAPICETMQNNEERIKD 641
G A+ ++L K+ EI + V L+ S +E+ K++ +++ + +++ +
Sbjct: 52 GEAIRSKELQKV-----EIERQMVALKKSLEKNRNESLVQEKVLTNYRKSLDHLQKQ-RS 105
Query: 642 FLSDEEYHAVLSAFKMAENPTNKRDQIINANQPQEKVKIRQNLAKEFKELWQTINAQSQL 701
FL + +L F ++ K + ++N +V ++ Q + +L
Sbjct: 106 FLQKRVFDTLLEDFLFSQ--ALKGQNLASSNDVILQVAFENLHQSTLSKMSQLSQEEKKL 163
Query: 702 SYQNIQKTKLIESIAKAFNESHVSAEVIKFESKRYDP-----QTNRIITEQSSTL--KIR 754
+ Q ++ I+ I+ +E +K + Q + I Q +L K R
Sbjct: 164 NVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLILSMQKDYAIYNQRLSLLEKER 223
Query: 755 DYANALQKEINALLLDFAKDERLPLK 780
NAL K +N + + +ER+ LK
Sbjct: 224 QNLNALLKRLNIIKQNRENEERVSLK 249
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 29.3 bits (64), Expect = 0.52
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 676 EKVKIRQNLAKEFKELWQTINAQSQLSYQNIQKTKLIESIAKAFNESHVSAEVIKFESKR 735
+K+ + +N K E Q + +Y+N ++T ES+ K FN+ + K K
Sbjct: 50 KKILLEENRKKSVLEYAQRHFETALANYRNQKETS--ESLLKIFNDEESRRILEKILKKC 107
Query: 736 YDPQTNRIITEQSSTLKIRDYANALQKEINALLLDF--------AKDERLPLKFT 782
+D + + Q+ + K + + A E+ L F + +LPLK +
Sbjct: 108 FDAYKIKPLLSQNPSQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKIS 162
Score = 25.0 bits (53), Expect = 9.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 951 EKRKIEYAKKFFETLSQNLKNAKK 974
+K +EYA++ FET N +N K+
Sbjct: 59 KKSVLEYAQRHFETALANYRNQKE 82
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 29.3 bits (64), Expect = 0.52
Identities = 66/297 (22%), Positives = 112/297 (37%), Gaps = 50/297 (16%)
Query: 609 NSNALEFDETNNAYKIIAPICETMQNNEE---RIKDFLSDE-EYHAVLSAFKMAENPTNK 664
N N + NN +I P+ + +N+ +K +S EY+ ++ EN N
Sbjct: 15 NDNFVGIRSINNDLQICFPLGFDISDNKNIRADVKKLVSILLEYNKTIAC----ENLLNN 70
Query: 665 RDQIINANQPQEKVK------IRQNLAKEFKELWQTINAQSQLSYQNIQKTKLIESIAKA 718
+++IIN+N P K + E K ++ NA+ ++++ K I +
Sbjct: 71 KNEIINSNFPLTAYKNVIEYFLSHGYYSENKSYYEN-NAKGRINFSKTIKKN--RPIIQT 127
Query: 719 FNESHVSAEVIKFESKRYDPQTNRIITEQSSTLKIRDYA--NALQKEINALLLDFAKDER 776
FN + S +F+ KR ++I E I Y A K F
Sbjct: 128 FNNKN-SFVYTRFQVKR------KMINENELITAINKYCVHEAFSK------FGFVFSSF 174
Query: 777 LPLKFTLE---------LYNALNKEHFTNSPKKAFKLLKGIIKDKLHENLLSCVSYGFCQ 827
+P KF L L N LN F + K F+ +K I+ +N+L + F
Sbjct: 175 MPPKFNLPTDKNYCIYLLENKLNNT-FNDDKKILFQSMKNILLQ--DDNILDKTDFKFGT 231
Query: 828 NAFSNTAFDKTDPLYCEDGSPKNEIEKHKIGKYKSAQTPSPNYLYE---TIIYDSKI 881
+ F D + G E+ K +P+YL + +++D KI
Sbjct: 232 HHFYVVWERMIDRAF---GIKNKEVYFPKTKWNLRCSNQNPDYLLQPDSIMLFDDKI 285
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 28.5 bits (62), Expect = 0.88
Identities = 79/385 (20%), Positives = 146/385 (37%), Gaps = 32/385 (8%)
Query: 638 RIKDFLSDEEYHAV-------LSAFKMAENPTNKRDQIINA-NQPQEKVKIRQNLAKEFK 689
R+ + L EEY V L K+ K ++ + PQ++ + + L KE+
Sbjct: 213 RLNEHLLSEEYLYVNEPKLKELDNIKLQLQDLEKEEKALEQIKSPQDEWDLNKALQKEYL 272
Query: 690 ELWQTINAQSQLSYQNIQKTKLIESIAK----AFNESHVSAE------VIKFESKRYDPQ 739
+ + N L QN T L + I+K FN S + + + + ++ +
Sbjct: 273 QELKDKNKAKALDIQNNHSTPLKQKISKFKIALFNHKDTSDDEKESLSIDRIDKRKPVSE 332
Query: 740 TNRIITEQSSTLKIRDYANALQKEIN-ALLLDFAKDERLPLKFTLEL--YNAL-NKEHFT 795
+ +++ + Y L K+ N + +FA L F E Y+ L KE
Sbjct: 333 HLKNMSKHELYELLGFYQKELDKKQNHSAFKNFAILNGLDRDFERETKGYSVLKKKEMLL 392
Query: 796 NSPKKAFKLLKGIIKDKLHENLLSCVSYGFCQNAFSNTAFDKTDPLYCEDGSPKNEIEKH 855
N K K L L L + V QN NT T+P+ ++ ++
Sbjct: 393 NKLKHLDKRLLDKNSHLLLAQLRNEVKTK--QNTQYNTL---TNPILLAKALELSKDKRP 447
Query: 856 KIGKYKSAQTPSPNYLYETIIYDSKIEEEVSEEGVQTLE--GKSIEVFAKLPKFKIPTPY 913
+ +K+A + Y + + +K + + T E K ++ +
Sbjct: 448 TLKTFKNAYFSARKYQFMLESFKTKQNDPTYKLNDNTYELVSKQLQDYQNTMLLLAKERL 507
Query: 914 KNYEPDFAYLLKDEKGAKIFFVCETKGYEKESDIPPDEKRKIEYAKKFFETLSQNLKNAK 973
E D ++ + AK +V +K Y +E+ + P EK+ K F +S+++
Sbjct: 508 LFLEQDLKQKEEEFERAKEHYVKSSKHY-RETSLSPKEKQGFLKQIKQFSKISKDILYTC 566
Query: 974 KEIRVV--FATRINKQDLFNTLKNA 996
EI F T + +L L++A
Sbjct: 567 NEIIGANRFLTHYDNLNLEKVLEHA 591
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 28.5 bits (62), Expect = 0.88
Identities = 21/79 (26%), Positives = 35/79 (43%), Gaps = 10/79 (12%)
Query: 834 AFDKTDPLYCEDGSPKNEIEKHK----IGKYKSAQTPSPNYLYETII-----YDSKIEEE 884
A T+P+Y +D E+ +H + + A P + ++ YD K +
Sbjct: 31 ALKGTEPIYFDDSPLALEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTTSK 90
Query: 885 VSEEGVQTLEGKSIEVFAK 903
+SEE + +E K E FAK
Sbjct: 91 ISEEDLPKIEAKMKE-FAK 108
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 28.1 bits (61), Expect = 1.2
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 586 DRED-LAKLGLNEREINKLFVELENSNALEFDETNNAYKIIAPICETMQNNEERIKDFLS 644
D ED L GL+ +E NKL + +SN + N K +A T N + +K
Sbjct: 559 DLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKNT--GNYDEVKQAQK 616
Query: 645 DEEYHAVLSAFKMAENPTNKRDQIINANQPQEKVKIRQNLAKEFKELWQTINAQSQLSYQ 704
D E L + E K + + N+ + + K + N K+ E++ IN ++ +
Sbjct: 617 DLE--KSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKD--EIFALINKEANRDAR 672
Query: 705 NIQKTKLIESIAKAFNE--SHVSAEVIKFESKRYDP---QTNRIITEQSSTLK 752
I + ++ I + ++ +++ ++ F SK +D N+ ++ TLK
Sbjct: 673 AIAYAQNLKGIKRELSDKLENINKDLKDF-SKSFDEFKNGKNKDFSKAEETLK 724
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 28.1 bits (61), Expect = 1.2
Identities = 40/169 (23%), Positives = 73/169 (42%), Gaps = 31/169 (18%)
Query: 660 NPTNKRDQIINANQPQEKVKIRQNLA----KEFKELWQTINAQSQLSYQNIQKTKLIESI 715
NP + + N +P EK I +L K+ EL + + Q+ ++ Q+ + I
Sbjct: 36 NPNSASLETPNPQEPLEKKAIENDLIDCLLKKTDELSSHL-VKLQMQFEKAQEESKV-LI 93
Query: 716 AKAFNESHVSAEVIKFESKRYDPQTNRIITEQSSTL--------KIRDYAN---ALQKEI 764
A N+ + + E K + T+ + E++ L K++ N AL+KE+
Sbjct: 94 ENAKNDGY-KIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKSSENHLMALEKEL 152
Query: 765 NALLLDFAKDERLPLKFTLELYNALNKEHFTNSPKKAFKLLKGIIKDKL 813
+A+ +D AK+ + KE NS K A L + ++K+ L
Sbjct: 153 SAIAIDIAKE-------------VILKEVEDNSQKVALALAEELLKNVL 188
>ref|NP_222937.1| putative [Helicobacter pylori J99]
Length = 265
Score = 28.1 bits (61), Expect = 1.2
Identities = 22/114 (19%), Positives = 47/114 (40%), Gaps = 9/114 (7%)
Query: 596 NEREINKLFVELENSNALEFDETNN------AYKIIAPICETMQNNEERIKDFLSDEEYH 649
N ++N +F E+ A+E TN Y + P+C Q +++D L +
Sbjct: 120 NSAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCPHCQKELTKLRDHLKENTVR 179
Query: 650 AVLSAF---KMAENPTNKRDQIINANQPQEKVKIRQNLAKEFKELWQTINAQSQ 700
V+ + A+ ++++ A V+ + ++ ++ INAQ +
Sbjct: 180 MVVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKE 233
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 28.1 bits (61), Expect = 1.2
Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 35/180 (19%)
Query: 12 RSQTPKAKTPMIFEKQDYQQECIYNIITLLDGFDFKRHDALNLKDCLNQFHAACEIPVKN 71
+S+ PK++ P + Q ++ Y I L+D + LK+ L F A + +
Sbjct: 31 KSENPKSQNPQL---QSDNKKLFYKIHCLVDNLSLENQQ--KLKETLVPFSAFASVDFLD 85
Query: 72 VSGK-------------------LNVDVLMETGTGKTFTYLNLIFALHKAYGQNKFIIFV 112
+S L +++ +T K + +L Y +K I+F
Sbjct: 86 ISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQY--DKIIMFD 143
Query: 113 PRKAILESVKQNIRLTKDYFYL---------EFKRHLKTYTYEGVKSPSNIINHYIKNQD 163
L V ++ + D +Y + +H +T + ++ HY+K +D
Sbjct: 144 ADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHFQTEREREPRQKFSLYEHYLKEKD 203
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 27.7 bits (60), Expect = 1.5
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 15/174 (8%)
Query: 655 FKMAENPTNK---RDQII----NANQPQEKVKIRQNLAKEFKELWQTINAQSQLSYQNIQ 707
F M N K D+II N+N+ Q+ ++++ L + K + + Q L +
Sbjct: 468 FSMEGNTQEKIAHYDKIIQNFPNSNEAQKALELKAQLLFDNKHYAEVLGMQKNLPKDSPL 527
Query: 708 KTKLIESIAKAFNESHVSAEVIKFESK----RYDPQTNRIITEQSSTLKIRDYANALQKE 763
K + +AK E H E +K+ S+ ++PQ + +++ A +
Sbjct: 528 IQKTLNILAKTPLEDHRCKEALKYLSQITAFAFNPQEEIQAFDCLYFASLKEKAQII--A 585
Query: 764 INALLLDFAKDERLPLKFTL--ELYNALNKEHFTNSPKKAFKLLKGIIKDKLHE 815
+NAL E+L + L Y + ++ T + K A L + + K + ++
Sbjct: 586 LNALKAAKTPSEKLTWLYRLGRNYYRLGDFKNSTLASKDALILAQSLNKKEFYD 639
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 27.7 bits (60), Expect = 1.5
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 40/195 (20%)
Query: 644 SDEEYHAVLSAFKMAENPTNKRDQIIN-----ANQPQEKVKIRQNLAKEFKELWQTINAQ 698
S Y+A+L FK++ N +D + N+P + +L +F L + +
Sbjct: 134 SHTAYNALLDDFKLSHLSLNAKDANLEDLLYLINRPAY-ANAKVSLQADFNSL-KPLEGH 191
Query: 699 SQLSYQN-IQKTKLIESI-------AKAFNESHVSAEVIKFESKRYDPQTNRIITEQSST 750
L+ N + LI I FN SH S D + N+ I++ + T
Sbjct: 192 LILTANNALINNALINQIFHLNLKDTLVFNLSHSS-----------DFKGNKAISDTTLT 240
Query: 751 LKIRDYANALQKEINALLLDFAKDERLPLKFTLELYNALNKEHFTNSPKKAFKLLKG--- 807
+ ++ AL+ E + L +L +TLE+ + ++ TN P K LKG
Sbjct: 241 SPLVNFT-ALKSEYSFPAL------KLNAPYTLEIPHLAKLQNITNHPLKGSLTLKGDIE 293
Query: 808 ----IIKDKLHENLL 818
++K H NLL
Sbjct: 294 QSPKLLKVSGHSNLL 308
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 27.3 bits (59), Expect = 2.0
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 611 NALEFDETNNAYKIIAPICETMQNNEERIKDFLSDEEYHAVLSAFKMAENPTNKRDQIIN 670
NAL + A + + + +++ +KD+ Y A + PT KRD+I+N
Sbjct: 955 NALSTESFIFANATLLDLRDKIESVGTPLKDWDIQINYGIKTGANEAFIIPTEKRDEILN 1014
Query: 671 ANQPQEKVKIRQNLAK 686
A + QE+ + + L K
Sbjct: 1015 ACKTQEERERTERLIK 1030
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 27.3 bits (59), Expect = 2.0
Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 51/261 (19%)
Query: 571 KEIEASSFIGGGNALDREDLAKLGLNEREINKLFVELENSNALEFDETNNAYKIIAPICE 630
KEIE + L + L + E +K +E N E+D + Y+ +
Sbjct: 160 KEIEILTHTNSLKELKEQGLEIQLTHHNETHKKALENGNEIVKEYDHLKDIYQEV----- 214
Query: 631 TMQNNEERIKD---------FLSDEEYHAVLSAFKMAENPTNKRDQIINANQPQEKVKIR 681
ER KD +S EY + + K+ N + +N N +E K+
Sbjct: 215 ------ERTKDGGLVREIIPSISSAEYFKLYN--KLPFESINNENTKLNTNDNEEVKKLE 266
Query: 682 QNLAKEFKEL---WQTINAQSQLS--------------YQNIQKTKLIESIAKAFNESHV 724
LAKE L Q ++A + S ++ I + KL E+ A N + +
Sbjct: 267 FELAKEVHILILEQQLLSATNYYSWIDKDDNANFAWKMHRLINENKLKENHLSANNANKI 326
Query: 725 ------SAEVIKFESKRYDP-QTNRIITEQSSTLKIRDYANA---LQKEINALLL--DFA 772
+ ++ + + Q NR + +S+ L + + A A LQK ++ + D
Sbjct: 327 KQFFFNNGSILGWTKEEQSAIQENRDYSLRSALLSLEEIAQAKIELQKYYESVYVNGDGN 386
Query: 773 KDERLPLKFTLELYNALNKEH 793
K E P K L N K +
Sbjct: 387 KREIKPFKEILRDTNNFEKAY 407
>ref|NP_223464.1| putative [Helicobacter pylori J99]
Length = 200
Score = 27.3 bits (59), Expect = 2.0
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 235 ATFAKEKEHALSNVAFCLDSISAFRNYLVKQIRIHSVMQDA 275
A F ++ ++A + + L++IS F+N L K+I I + + DA
Sbjct: 76 AVFFEQNKNAYATL---LENISLFKNRLKKEIEIQTFLDDA 113
>ref|NP_222887.1| sialic acid synthase [Helicobacter pylori J99]
Length = 340
Score = 27.3 bits (59), Expect = 2.0
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 206 SIIDEPHLLKGEAFGKYFGKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFRNYLVKQ 265
S I++ HLL G+ FG +FG + +H + ++ L + + + + K
Sbjct: 178 SKIEDAHLLSMVKLGETFG------VKFGLS-----DHTIGSLCPIL-ATTLGASMIEKH 225
Query: 266 IRIHSVMQDAQSPFLLNADSKSAKIAFYKAGILKQITLSKGEDLGKINASFNGVSLVKTA 325
++ +Q S F ++ + + + G +KQ L+ GE+ KIN KT
Sbjct: 226 FILNKSLQTPDSAFSMDFNGFKSMV-----GAIKQSVLALGEEEPKINP--------KTL 272
Query: 326 KDKAYLSNGATLEKASYK---LAQDEISAL 352
+++ + + + K K L D I AL
Sbjct: 273 EERRFFARSLFVIKDIQKGEALTSDNIKAL 302
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 26.9 bits (58), Expect = 2.6
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 30/194 (15%)
Query: 794 FTNSPKKAFKLLKGIIKDKLHENLLSCVSYGFCQNAFSNTAFDKTDPLYCEDGSPKNEIE 853
F N P F L K ++ + S + +CQNA +N + D + E GS E+
Sbjct: 224 FQNEPSDTFNLKKTLL---VLARAFSQAAICYCQNASAN----EVDLISTEPGS-YGEVW 275
Query: 854 KHKIGKYKSAQTPSPNYLYETIIYDSKIEEEVS---EEGVQTLEGKSIEVFAKLP-KFKI 909
G SA P +L ++++++V ++ + G + AK K I
Sbjct: 276 DTFNGIAFSAPVQLPQFL-------TRLKDKVYTFFKKQPNSGYGTDFDGIAKTQIKAAI 328
Query: 910 PTPYKNYEPDFAYLLKDEKGA----------KIFFVCETKGYEKESDIPPDEKRKIEYAK 959
+ EP +Y++ KG K+F + E G+EKE+ D +R+ +K
Sbjct: 329 LPIDRLSEPFESYIVGSIKGRQSMARAYGYPKVFTIDEISGWEKETIKSRDYERR-NLSK 387
Query: 960 KFFETLSQNLKNAK 973
+ + QNL+ K
Sbjct: 388 TYRLSAKQNLEIIK 401
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 26.6 bits (57), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (62%), Gaps = 4/30 (13%)
Query: 70 KNVSGKLNVDVLMETGTGKTFTYLNLIFAL 99
KN GKL +M GTGKT+T L ++ +L
Sbjct: 193 KNARGKL----IMACGTGKTYTSLKIMESL 218
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 26.6 bits (57), Expect = 3.4
Identities = 12/39 (30%), Positives = 24/39 (60%), Gaps = 4/39 (10%)
Query: 48 RHDALNLKDCLNQFHAACEIPVKNVSGKLNVDVLMETGT 86
+H+++ LK+ L +P++N +G + VDVL + G+
Sbjct: 32 KHESVTLKNGLQ----VVSVPLENKTGVIEVDVLYKVGS 66
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 26.6 bits (57), Expect = 3.4
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 434 GNLRVHQGYFSGDSVALNKGKKESKKEDIEANDIKMILSEKEKLLSFQTPLRFIFSVWAL 493
G L G+ VAL+ K+ D+ D K EK+K F L F+VW L
Sbjct: 29 GVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQDSKE-KEEKQKFQKFALGLEMSFNVWRL 87
>ref|NP_224173.1| putative [Helicobacter pylori J99]
Length = 308
Score = 26.2 bits (56), Expect = 4.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 566 IEGLQKEIEASSFI-GGGNALDREDLAKLGLNEREINKLFV 605
I GL+ IE GGG+ D DL L LN++ + + +
Sbjct: 96 IRGLESLIEIKKGANGGGHLYDEVDLENLSLNQKHLALMLI 136
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.2 bits (56), Expect = 4.4
Identities = 19/66 (28%), Positives = 33/66 (49%), Gaps = 8/66 (12%)
Query: 918 PDFAYLLKDE--KGAKIFFVC----ETKGYEKESD--IPPDEKRKIEYAKKFFETLSQNL 969
P+ LL++E + K + C +T+ +KE + + P+ K+K+E AKK +
Sbjct: 600 PEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCV 659
Query: 970 KNAKKE 975
AK E
Sbjct: 660 SKAKNE 665
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 26.2 bits (56), Expect = 4.4
Identities = 37/161 (22%), Positives = 59/161 (35%), Gaps = 25/161 (15%)
Query: 301 ITLSKGEDLGKINASFNGVSLVKTAKDKAYLSNGATLEKASYKLAQDEISALLEKAI--- 357
++L E++ K N + + T KD L + K + + EK++
Sbjct: 21 LSLCAEENITKENMTETNTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEE 80
Query: 358 -------------DLHFEKEAFLFDQNIKALSLFFIPKIEDFRQIDNKGTPFIKTEFERL 404
+LH + E+ LF Q K S FFI I I P+ K FE L
Sbjct: 81 IHKKKRQLYMLKGELHEKNESILFQQMAKNKSGFFIGVI--LGDIGINANPYEK--FELL 136
Query: 405 YKLKRASILARENLSPSYKEYLKRDFDESGNLRVHQGYFSG 445
++ + +L L Y++Y LR + Y G
Sbjct: 137 SNIQASPLL--YGLRSGYQKYFANGISA---LRFYGEYLGG 172
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 25.8 bits (55), Expect = 5.7
Identities = 36/166 (21%), Positives = 69/166 (40%), Gaps = 12/166 (7%)
Query: 842 YCEDGSPKNEIEKHKIGKYKSAQTPSPNYLYET-IIYDSKIEEEVSEEGVQTLEGKSIEV 900
Y D PK+ I++ K N L E + D IEE +EEG+ +G I
Sbjct: 631 YKSDLIPKHLIKQRFFEKETKELEELENALNEKEALLDEFIEEHSNEEGL--FDGLKINE 688
Query: 901 FAKLPKFKIPTPYKNYE---PDFAYLLKDEKGAKI----FFVCETKGYEKESDIPPDEKR 953
+ K T ++ + +L K K+ + E K + + ++ +E +
Sbjct: 689 SVLKKELKNATDLEDKQILKTALEWLEAKNKALKMKNKAYEELELKAFHQYKNLEINEIK 748
Query: 954 KIEYAKKFFETLSQNLKNAKKEIRVVFATRINKQDLFNTLKNALKE 999
+ K+ +L L+N ++ FA+ +N ++ ++ N+L E
Sbjct: 749 DLIIKDKWLNSLKNALENKIQKRTNAFASALN--EIISSYSNSLLE 792
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 25.8 bits (55), Expect = 5.7
Identities = 79/357 (22%), Positives = 133/357 (37%), Gaps = 59/357 (16%)
Query: 148 VKSPSNIINHYIKNQDELSVLLLTNSAIDKEGNILNKNS-ENLFNTKSIFENIADLKPIS 206
++ S + NH+I D + + +N ID N++ + + F IF
Sbjct: 75 IQCQSALNNHHI---DIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIF---------- 121
Query: 207 IIDEPHLLKGEAFGKYFGKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFR------- 259
IIDE H+ EAF K E S+V F L + A +
Sbjct: 122 IIDEVHMFTTEAFN---------------ALLKTLEEPPSHVKFLLATTDALKLPATILS 166
Query: 260 ---NYLVKQIRIHSVMQDAQSPF----LLNADSKSAKIAFYKAGILKQ-ITLSKGEDLGK 311
++ K+I +SV+ ++ + S K+A G L+ ITL +
Sbjct: 167 RTQHFRFKKIPENSVISHLKTILEKEQVSYESSALEKLAHSGQGSLRDTITLLE----QA 222
Query: 312 INASFNGVSLVKTAKDKAYLSNGATLEKASYKLAQDEISALLEKAIDLHFEKEAFLFDQN 371
IN N ++ K A+ + + + QDE AI ++E E L +
Sbjct: 223 INYCDNAITESKVAEMLGAIDRSVLEDFFQSLINQDEARLQERYAILENYETEGVLEEMM 282
Query: 372 IKALSLFFIPKIEDFRQIDNKGTPFIKTEFERLYKLKRA--SILARENLSPSYKEYLKRD 429
+ + P I+ F K L LK + L +KE LK
Sbjct: 283 LFLKAKLLSPDSYSILLIER----FFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKLK 338
Query: 430 FDESGNLRVHQGYFS-GDSVALNKGKKESKK-EDIEANDIKMILSEKEKLLSFQTPL 484
+ + + Q F+ S++ N K+E K E IE + L ++E++ + QTP+
Sbjct: 339 ALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIEGRE---KLEKRERIETPQTPM 392
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 25.8 bits (55), Expect = 5.7
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 670 NANQPQEKVKIRQNLAKEFKELWQTINAQSQLSYQNIQKTKLIESIAK 717
N N P++K+ + + K +++W+ + Q SY + +L++ I K
Sbjct: 231 NNNNPRKKIYALEQVGKRVQDIWEFKDPQYP-SYPTEKNAQLLDLIIK 277
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 25.4 bits (54), Expect = 7.5
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 390 DNKGTPFIKTEFERLYKLKRASILA--RENLSPSYKEYLKRD------FDESGNLRVHQG 441
D K PFI E K KRA L ++N + KE L + + G V G
Sbjct: 57 DRKNMPFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVG 116
Query: 442 YFSGDSVALNKGKKESKKEDI--EANDIKMILSEKEKLLSFQT 482
F D V + K I + D +LS+K L +T
Sbjct: 117 GFEADDVIASLATLSPYKTRIYSKDKDFNQLLSDKIALFDGKT 159
>ref|NP_223470.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylori J99]
Length = 257
Score = 25.4 bits (54), Expect = 7.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 791 KEHFTNSPKKAFKLLKGIIKDKLHENLLSCVSYG 824
K H+ + +A++++K +I+ + N LS SYG
Sbjct: 175 KSHYELAANRAYRVMKVLIQYGVDPNQLSFSSYG 208
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 25.4 bits (54), Expect = 7.5
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 183 NKNSENLFNTKSIFENIADLKPISIIDEPHLLKGEAFGK 221
N + ++ K + IADL I++ H+LK +F K
Sbjct: 466 NLSMRSVNKAKKVARTIADLNACENIEKSHMLKALSFRK 504
>ref|NP_223149.1| putative [Helicobacter pylori J99]
Length = 282
Score = 25.4 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 608 ENSNALEFDETNNAYKIIAPICETMQNNEERIKDFLSDEEYH 649
EN + + K++ P C T+ + EER FL D H
Sbjct: 160 ENDRNISLEHLKIVLKLLKPFCVTLLDFEERYA-FLKDRVAH 200
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 25.4 bits (54), Expect = 7.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 394 TPFIKTEFERLYKLKRASILARENL 418
+PF++T+ ERL +L+ A LA NL
Sbjct: 350 SPFLQTKTERLNRLENALKLAYANL 374
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 25.0 bits (53), Expect = 9.8
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Query: 586 DREDLAKLGLNEREINKLFVELENSNALEFDETNNAYK 623
D E+ K NE EIN ++ EN AL + N YK
Sbjct: 233 DLEEEVKSLFNENEINGTLIKSENYQAL--NSLKNRYK 268
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 25.0 bits (53), Expect = 9.8
Identities = 32/125 (25%), Positives = 54/125 (42%), Gaps = 14/125 (11%)
Query: 607 LENSNALEFDET-NNAYKIIAPICETMQNN-EERIKDFLSDEEYHAVLSAFKMAENPTNK 664
L+NS A N A K++ + T++ E++I + + + H + F N
Sbjct: 68 LKNSRAKIIQSNCNKALKVVEELQNTIKTTIEKQIDPGIKETQEHQQEARF----NLDRS 123
Query: 665 RDQIINANQPQEKVKIRQNLAKEFKELWQTI-----NAQSQLSYQNI---QKTKLIESIA 716
D+ I+ + KI Q KE+ + I N + + + N +KTKLIE I
Sbjct: 124 TDKFISDLEKSAFSKINQFEFNFRKEMHERIERGIGNNECKEIFGNELKQRKTKLIEDIE 183
Query: 717 KAFNE 721
+ F E
Sbjct: 184 RRFKE 188
>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 180
Score = 25.0 bits (53), Expect = 9.8
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 17/79 (21%)
Query: 581 GGNALDREDLAKLGLNEREINKLFVELENSN--ALEFDETNNAYKIIAPICETMQNNEER 638
GG L + L ++ E ++N L +E+ +N A+ F E N+ Y++ E R
Sbjct: 103 GGTIL--KALERIAFEEFQLNSLHLEVMENNFKAIAFYEKNH-YEL-----------EGR 148
Query: 639 IKDFLS-DEEYHAVLSAFK 656
+K F+S D+E+ VL +K
Sbjct: 149 LKGFISKDKEFIDVLLYYK 167
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 25.0 bits (53), Expect = 9.8
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 73 SGKLNVDVLMETGTGKTFTYLNLIFALHKAYGQNKFIIFVPRKAILESVKQNIRLTKDYF 132
S + V +E + +LIF +KA+ Q + + P KA++E+ K D F
Sbjct: 326 SSLMRDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEAQKDGEFKALDQF 385
Query: 133 YLEFK 137
+ K
Sbjct: 386 FNPIK 390
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 25.0 bits (53), Expect = 9.8
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Query: 442 YFSGDSVALNKGKKESKKEDIEANDIKMILSEKEKLL 478
YF+ +ALN K +KE++E I+ L + EKLL
Sbjct: 208 YFNAGFLALNL--KSWRKENLENQLIEFFLLKNEKLL 242
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.135 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,129,461
Number of Sequences: 1491
Number of extensions: 58961
Number of successful extensions: 272
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 61
length of query: 1001
length of database: 494,079
effective HSP length: 87
effective length of query: 914
effective length of database: 364,362
effective search space: 333026868
effective search space used: 333026868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)