BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645218|ref|NP_207388.1| adenine specific DNA
methyltransferase (mod) [Helicobacter pylori 26695]
(598 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 308 2e-85
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 137 8e-34
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 90 1e-19
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 83 2e-17
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 72 5e-14
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 34 0.009
ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (... 33 0.021
ref|NP_223629.1| putative [Helicobacter pylori J99] 30 0.13
ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter py... 27 1.1
ref|NP_223521.1| Hydrogenase expression/formation protein [... 27 1.5
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 1.9
ref|NP_223252.1| putative [Helicobacter pylori J99] 27 1.9
ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 27 1.9
ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter... 26 2.5
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 26 3.3
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 25 4.3
ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERA... 25 4.3
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 25 4.3
ref|NP_223464.1| putative [Helicobacter pylori J99] 25 5.6
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 5.6
ref|NP_224088.1| putative [Helicobacter pylori J99] 25 7.3
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 25 7.3
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 24 9.5
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 24 9.5
ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobac... 24 9.5
ref|NP_222859.1| putative [Helicobacter pylori J99] 24 9.5
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 24 9.5
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 308 bits (790), Expect = 2e-85
Identities = 228/590 (38%), Positives = 304/590 (50%), Gaps = 71/590 (12%)
Query: 20 IKMLLG-FNESMNDISGYELTWTGKGFANALYSEPCQKQLKLQESFTPQTSASKHPNNAI 78
+K LLG F+E + GY L + GK A ++ +K K+ + TS KH +
Sbjct: 43 LKALLGDFSEIKEE--GYGLDFVGKKIA---LNQAFKKNHKILKPLNESTS--KH---IL 92
Query: 79 IIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIYPDNFRQDYQKILREVGLMEIDE 138
I GDNLDALK+LK +YSEKIKMIYIDPPYNT ND FIY D+F Q +++L+ +
Sbjct: 93 IKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKTL------- 145
Query: 139 NGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECANLKI 198
+ E L + KN GS HSGWLSFM PRL LA+DLLK+DGVIFISIDDNECA LK+
Sbjct: 146 ---DYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKL 202
Query: 199 LCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKNYTNLL-----GGEKN 253
LCDEIFGE NF+ F+ T A HEF+LCY K+K+ ++ GG+
Sbjct: 203 LCDEIFGEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMIAKFSDGGDAP 262
Query: 254 LENYKNPDN----DPNGAWIN-DNPSAKSG-NMKTGYFGVTNPYTNKV--DYPPVGMFWR 305
L N N + N + N N K G K Y K+ + G F R
Sbjct: 263 LWNETNSERILTFPANYVFSNLKNGIYKKGIRDKIEVLDDIEVYNGKIINSFRLKGHF-R 321
Query: 306 FSQNTIQKHIDEGRICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSDNCYMNQAAT 365
+ Q T+ + I K K RY ++ + + + DN N+ A+
Sbjct: 322 WKQETLNEEIINNVFLVVKSDK------FSIRYCREGERIVMPTNEISKKDNVGTNETAS 375
Query: 366 KELLNL-GMGEYFTYPKGVEFMKKII-LHSTTPNEGDIILDFFAGSGTTVHAVMELNAED 423
KEL L + F + K V +K +I + S NEGDIILDFFAGSGTT HAV+E N D
Sbjct: 376 KELFKLFDNNKIFNFNKPVSLIKYLISICSNNTNEGDIILDFFAGSGTTAHAVLESNKSD 435
Query: 424 K-----------------GNREFILVQIDEEIKEDESAYDFCKKELKSAKPVISDITIER 466
R FILVQ+DE+I++++SAYDFC LKS P I DIT ER
Sbjct: 436 YQKLSEGGGLFNGLNAVFKERRFILVQLDEKIEKNKSAYDFCLNTLKSTSPSIFDITEER 495
Query: 467 VKRAAQKISQLSKDSGLDLGFKVYTLQDKVQIINDK-------EEITLFNRSDLTPFDKA 519
+KRA KI + + LD+GF+ + + D NDK +++ ++ D
Sbjct: 496 IKRAGAKIKEAC--AHLDVGFRAFEIIDDETHTNDKNLGEAHQKDLFAYSNLDRMETQTI 553
Query: 520 LNLALQC-GKTLNQALEIIIKDKLYKCEDAYFCIVCDEEAQEYLAKSKNE 568
L L C G L + +I++ LY + F IV D E E L K++
Sbjct: 554 LIKLLGCEGLELTTPIICLIENALYLALNTAF-IVGDIEMSEVLENLKDK 602
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 137 bits (345), Expect = 8e-34
Identities = 123/367 (33%), Positives = 173/367 (46%), Gaps = 78/367 (21%)
Query: 69 SASKHPN-NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIYPDNFRQDYQKI 127
SA K N N +I G+NL AL LK +++K+K IYIDPPYNTGND F Y DNF
Sbjct: 158 SALKDENTNYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDNFN------ 211
Query: 128 LREVGLMEIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFIS 187
HS WL FM RL+ AR+ L +DGVIF+
Sbjct: 212 --------------------------------HSSWLVFMKNRLEAAREFLSDDGVIFVQ 239
Query: 188 IDDNECANLKILCDEIFGEDNFVGDFI-RKTKSTTNDAKIGLNYQHEFLLCYAKDKNYTN 246
DDNE A LK+L DEIFG +NF+ F+ KT ++ + +I + E++LCY + K +
Sbjct: 240 CDDNEQAYLKVLMDEIFGRENFIACFVWEKTSNSLSRIRI----KTEYILCYEQTK-FGL 294
Query: 247 LLGGEKNLENYKNPD-NDPNGAWINDNPSAKSGNMKTGYFGVTNP-------------YT 292
+ G+ E P N+ N P S KT + GV P
Sbjct: 295 IFNGDMAEEGQDFPILNEVNVKRTLQFP-PNSIYFKT-FKGVIKPTKFNKMELIDDLRIV 352
Query: 293 NKVDYPPVGMFWRF--SQNTIQKHIDEGRICFKKEHKDNERGFIYKRYLKDLKTTQKTFD 350
NK + V + +F +Q+ + I EG K + RY++ K ++
Sbjct: 353 NKTNSNMVRINAKFKWTQDKLDDEIKEGTTFVIKSDE------FSMRYIR--KGDREVKA 404
Query: 351 SLIFSDNCYM--NQAATKELLNL---GMGEYFTYPKGVEFMKKIILHSTTPNEGDIILDF 405
S +F+ C + N AT E+ L + F+ PK +++I+ ST NE D++LDF
Sbjct: 405 SNVFNAECGVTTNIKATSEIKVLFANSNTDLFSTPKPEALLQRILEIST--NENDLVLDF 462
Query: 406 FAGSGTT 412
FAGSGTT
Sbjct: 463 FAGSGTT 469
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 90.1 bits (222), Expect = 1e-19
Identities = 59/161 (36%), Positives = 84/161 (51%), Gaps = 42/161 (26%)
Query: 84 LDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIYPDNFRQDYQKILREVGLMEIDENGKEI 143
++AL+ LK E I+ IYIDPPYNT + F Y D DY+K + E
Sbjct: 7 MEALECLKRIEKESIQTIYIDPPYNTKSSNFEYED-AHADYEKWIEE------------- 52
Query: 144 ESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECANLKILCDEI 203
L LA+ +LK+ G IFIS+DDN+ A +KI+ +EI
Sbjct: 53 --------------------------HLILAKAVLKQSGCIFISMDDNKMAEVKIIANEI 86
Query: 204 FGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKNY 244
FG NF+G FI K ++T ++AK +N HE++L YAK+K +
Sbjct: 87 FGTRNFLGTFITK-QATRSNAK-HINITHEYVLSYAKNKAF 125
Score = 72.8 bits (177), Expect = 2e-14
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 356 DNC-----YMNQAATKELLNLGMGEYFTYPKGVEFMKKIILHSTTPNEGDIILDFFAGSG 410
DNC + ++ TK+L LG+ F PK V +K ++L ST + IILDFFAGSG
Sbjct: 259 DNCLSVLDFYSRQGTKDLEKLGLKGLFKTPKPVALIKYLLLCSTPKDS--IILDFFAGSG 316
Query: 411 TTVHAVMELNAEDKGNREFILVQIDEEIKEDESAYDFCKKELKSAKPVISDITIERVKRA 470
TT AV+E+N + N F L Q +E+IK + A K K K ISDI + R+++
Sbjct: 317 TTAQAVIEVNKDYYLNWSFYLCQKEEKIKNNPQAVSILKN--KGYKNTISDIMLLRLEKI 374
Query: 471 AQK 473
++
Sbjct: 375 IKR 377
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 82.8 bits (203), Expect = 2e-17
Identities = 94/374 (25%), Positives = 148/374 (39%), Gaps = 105/374 (28%)
Query: 75 NNAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIYPDNFRQDYQKILREVGLM 134
N +I +N AL LK+ Y E I IYIDPP+NTG+D F Y D F+
Sbjct: 248 NGTLIKSENYQALNSLKNRYKEAIDCIYIDPPFNTGSD-FAYIDRFQD------------ 294
Query: 135 EIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECA 194
S WLS M RL+LA D L G ++ +D
Sbjct: 295 --------------------------STWLSLMHNRLQLAYDFLSPQGNFYLHLDYRANY 328
Query: 195 NLKILCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKNYTNLLGGEKNL 254
++L ++IF ++NF + I ++ + +H+ LL Y+K+ N N
Sbjct: 329 LGRMLLNDIFSKENFRNEIIWHFRTYQGQIQSNFPRKHDSLLWYSKNCNVNN-------- 380
Query: 255 ENYKNPDNDPNGAWINDNPSAKSGNMKTGYFGVT--NPYTNKVDYPPVGMFWRFSQNTIQ 312
+F +T + Y + VDY WR +
Sbjct: 381 -----------------------------FFKITYSDNYKDTVDY----RRWR------E 401
Query: 313 KHIDEGRICFKKEHKDNER--GFIYKRYLKDLKTTQK-----TFDSLIFSDNCYMNQAAT 365
+D +I + K + R G++ KRYL+ K + T + + D QA
Sbjct: 402 FIVDNNKIVYPNYPKADSRFDGYL-KRYLQSTKEPKNGDIIATINGYVIDDVWTDIQAID 460
Query: 366 KELLNLGMGEYFTYPKGVEFMKKIILHSTTPNEGDIILDFFAGSGTTVHAVMELNAEDKG 425
+ + + T K + +++II S+ NE I+ DFFAGSGTT +L
Sbjct: 461 PKKADERLQGTLT-QKPEKLLERIIKASS--NENSIVCDFFAGSGTTCAVAHKL------ 511
Query: 426 NREFILVQIDEEIK 439
R++I V++ E +
Sbjct: 512 KRKYIGVEMGEHFE 525
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 71.6 bits (174), Expect = 5e-14
Identities = 96/387 (24%), Positives = 156/387 (39%), Gaps = 71/387 (18%)
Query: 76 NAIIIGDNLDALKLLKSAYS--EKIKMIYIDPPYNTGNDEFIYPDNFRQDYQKILREVGL 133
N +I +N AL L + + KI +IYIDPP+ T N I N R
Sbjct: 3 NLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTI--TNGRAT---------T 51
Query: 134 MEIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNEC 193
+ +NG S+ + ++ F+ RL L ++LL E G I++ D
Sbjct: 52 ISNSKNGDIAYSDKV----------VGMDFMEFLKQRLVLLKELLSEQGSIYVHTDYKIG 101
Query: 194 ANLKILCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDK----NYTNLLG 249
+K++ DEIFG NF + R + N +IG + +L Y+K K N +
Sbjct: 102 HYVKVMLDEIFGIQNFRNEITRIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPY 161
Query: 250 GEKNLENYKNPDNDPNGAWINDNPSAKSGNMKTGYFGVTNPYTNKVDYPPVGMFWRFSQN 309
++LE + P D + P G +++G K PP G WR
Sbjct: 162 TPQDLEK-RFPKIDKDKRRYTTVPIHAPGEVESGECS----KAFKGMLPPKGRHWRTDIA 216
Query: 310 TIQKHIDEGRICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSDNCYMNQAATKELL 369
T+++ EG I + + ++ + ++ K ++ D F D
Sbjct: 217 TLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQ------DIWEFKD------------- 257
Query: 370 NLGMGEYFTYP--KGVEFMKKIILHSTTPNEGDIILDFFAGSGTTVHAVMELNAEDKGNR 427
+Y +YP K + + II T+ N+ I+LD F GSGTT+ + L R
Sbjct: 258 ----PQYPSYPTEKNAQLLDLII--KTSSNKDSIVLDCFCGSGTTLKSAFLL------QR 305
Query: 428 EFILVQIDEEIKEDESAYDFCKKELKS 454
+FI I + A CK +L++
Sbjct: 306 KFI------GIDNSDLAIQACKNKLET 326
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 34.3 bits (77), Expect = 0.009
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 325 EHKDNERGFIYK--RYLKDLKTTQKTFDSLIFSDNCYMNQAATKELLNLGMGEYFTYPKG 382
+HK+++ F YK +YL + K + + I N + K++ + K
Sbjct: 145 KHKNSKVTFNYKTMKYLNNDKQEKSVWQIPICMGNERLKDVQGKKV--------HSTQKP 196
Query: 383 VEFMKKIILHSTTPNEGDIILDFFAGSGTT 412
+KKIIL +T P DIILD F G+GTT
Sbjct: 197 EALLKKIILSATKPK--DIILDPFFGTGTT 224
Score = 25.8 bits (55), Expect = 3.3
Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 48/202 (23%)
Query: 76 NAIIIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIYPDNFRQDYQKILREVGLME 135
N II GD L+ LK ++ + I+ DPPY F Q ++ R G
Sbjct: 9 NTIIEGD---CLEKLKDFPNKSVDFIFADPPY------------FMQTEGELKRFEG--- 50
Query: 136 IDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECAN 195
+ +E KF G+ + +F L LK + +LK++G I +
Sbjct: 51 --TKFQGVEDHWDKF-------GSFEEYDTFCLGWLKECQRILKDNGSICVIGSFQNIFR 101
Query: 196 LK---------ILCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKNYTN 246
+ IL D ++ + N V +F K L HE L+ AK KN +
Sbjct: 102 IGFHLQNLGFWILNDIVWHKSNPVPNFAGKR----------LCNAHETLIWCAKHKN-SK 150
Query: 247 LLGGEKNLENYKNPDNDPNGAW 268
+ K ++ Y N D W
Sbjct: 151 VTFNYKTMK-YLNNDKQEKSVW 171
>ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 33.1 bits (74), Expect = 0.021
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 381 KGVEFMKKIILHSTTPNEGDIILDFFAGSGTTVHAVMELNAEDKGNREFILVQIDEE 437
K + M+KII T PN D +LD F GSGTT A L R FI ++ ++E
Sbjct: 172 KSLTLMEKIISTHTNPN--DTVLDPFMGSGTTGLACKNL------KRNFIGIESEKE 220
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 30.4 bits (67), Expect = 0.13
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 429 FILVQIDEEIKEDESAYDFCKKELKSAKPVISDITIERVKRAAQKIS--QLSKDSGLDLG 486
FI+VQ+ +IK++ +D K LK+ +T E+ A Q ++ +L G +G
Sbjct: 340 FIVVQLVSQIKDELQNFDEAKSALKTR------LTQEKTLMALQTLAKEKLKDFKGKSVG 393
Query: 487 FKVYTLQDKVQIINDKEEI----TLFNRSDLTPF 516
+ + +N +E TLFNR + F
Sbjct: 394 YVSPNFGGTISELNQEESAKFINTLFNRQEKKGF 427
>ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter pylori J99]
Length = 343
Score = 27.3 bits (59), Expect = 1.1
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 192 ECANLKILCDE-IFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKNYTNLLGG 250
E +LK +E IF N + + + N + GLNY H F + + NY L G
Sbjct: 191 ETKDLKDCLEEVIFQSVNIKAQVVVQDEKERN-IRAGLNYGHTFGMLIENETNYERFLHG 249
Query: 251 E 251
E
Sbjct: 250 E 250
>ref|NP_223521.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 117
Score = 26.9 bits (58), Expect = 1.5
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 428 EFILVQIDEEIKEDES----AYDFCKKELKSAKPVISDITIERVKRAAQKISQLSKDSGL 483
E ++V I E D+S A++ ++E K I DI E+V+ + S + K + L
Sbjct: 27 ERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNAL 86
Query: 484 DLG 486
D G
Sbjct: 87 DYG 89
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 26.6 bits (57), Expect = 1.9
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 6/41 (14%)
Query: 397 NEGDIILDFFAGSGTTVHAVMELNAEDKGNREFILVQIDEE 437
NE DI+ D GSGTT NR FI V I +E
Sbjct: 219 NERDIVFDPMCGSGTTCKMAF------LHNRNFIGVDISKE 253
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 26.6 bits (57), Expect = 1.9
Identities = 19/74 (25%), Positives = 37/74 (49%), Gaps = 1/74 (1%)
Query: 385 FMKKIILHSTTPNEGDIILDFFAGSGTTVHAV-MELNAEDKGNREFILVQIDEEIKEDES 443
F +KII +E D F +G T+ ++ + + + + ++ + Q+ E + ++
Sbjct: 502 FRRKIIDTIKAQSEDKFTKDVFYATGDTLKSLSLSFDFSNPDHIQWSVPQLLLEGEFKDN 561
Query: 444 AYDFCKKELKSAKP 457
AY F K+LK KP
Sbjct: 562 AYTFKIKDLKKIKP 575
Score = 25.4 bits (54), Expect = 4.3
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 9/64 (14%)
Query: 228 LNYQHEFLLCYAKDKNYTNLLGGEKNLENYKNPDNDPNGAWINDNPSAKSGNMKTGYFGV 287
L +Q+ L +A +N NL+ +L ++NP NG I K+G++ FG+
Sbjct: 807 LKFQNTSLKNFALMQNMVNLINTIPSLIVFRNPHLGANGYQI------KTGSV---VFGI 857
Query: 288 TNPY 291
T Y
Sbjct: 858 TKEY 861
>ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 277
Score = 26.6 bits (57), Expect = 1.9
Identities = 26/93 (27%), Positives = 40/93 (42%), Gaps = 15/93 (16%)
Query: 81 GDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIYPDN-----FRQDYQKILREVGLME 135
GD + L ++A+ +I+ DPPY ND + D+ K E G+ +
Sbjct: 26 GDCNEVLPQFENAFD----LIFADPPYFLSNDGLSIQSGKIVSVNKGDWDK---ENGIND 78
Query: 136 IDENGKEIESESLKFFKNTQG---SGTHSGWLS 165
IDE + + + K KNT SGT+ S
Sbjct: 79 IDEFNYQWINNAKKALKNTGSLLISGTYHNLFS 111
>ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter pylori J99]
Length = 399
Score = 26.2 bits (56), Expect = 2.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 414 HAVMELNAEDKGNREFILVQIDEEIKEDESAYDF 447
H V+ LN +D + + +L ++ E++E SAY+F
Sbjct: 130 HIVVFLNKQDMVDDQELLELVEMEVRELLSAYEF 163
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 25.8 bits (55), Expect = 3.3
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 7/81 (8%)
Query: 79 IIGDNLDALKL--LKSAYSEK-----IKMIYIDPPYNTGNDEFIYPDNFRQDYQKILREV 131
++G+NLD LK L Y++K + ID G +E+ + + L+E+
Sbjct: 434 LLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYDKTPFRDASHSESLKEL 493
Query: 132 GLMEIDENGKEIESESLKFFK 152
GL EI + K+ + +K F+
Sbjct: 494 GLAEIHDEVKDQFKDLIKAFE 514
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 25.4 bits (54), Expect = 4.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 420 NAEDKGNREFILVQIDEEIKEDESAYDFCKKELKSAKPVISDITIERVKRAAQKI 474
N N + ++ D+EI EDES K A+ I IT E +K+ + +
Sbjct: 130 NTRQDANNKVKKLEKDKEISEDES---------KKAQEQIQKITDEAIKKIDESV 175
>ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE [Helicobacter pylori
J99]
Length = 393
Score = 25.4 bits (54), Expect = 4.3
Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Query: 573 DGYEEIDLEAFLNLNASFKE-RLSVV 597
+G EE+ L+AFL L +FK RL VV
Sbjct: 229 EGEEELGLKAFLELKKTFKNARLFVV 254
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.4 bits (54), Expect = 4.3
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 422 EDKGNREFILVQIDEEIKEDESAYDFCKKELKSAKPVISDITIERVKRAAQKISQ 476
E+K + E L + E++E E+AY K L +AK T++ + ++KIS+
Sbjct: 13 ENKESAEEFLKTLQTEVQEFENAYQNNLKNLDAAK---FANTLKHYENLSEKISR 64
>ref|NP_223464.1| putative [Helicobacter pylori J99]
Length = 200
Score = 25.0 bits (53), Expect = 5.6
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Query: 85 DALKLLKSAYSEK--IKMIYIDPPYNTGNDEFIYPDNF 120
DA KLL + + + +IY+DPP+ T IY F
Sbjct: 112 DAFKLLPTLRLKNGVLNIIYLDPPFETSGFLGIYEKCF 149
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 25.0 bits (53), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 538 IKDKLYKCEDAYFCIVCDEEAQEYLAKSKNEM 569
++ LYK +D F +CD+ Q Y ++ +M
Sbjct: 89 LRTALYKSKDMRFAKLCDDLLQHYQNENMQKM 120
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 24.6 bits (52), Expect = 7.3
Identities = 19/71 (26%), Positives = 37/71 (51%), Gaps = 8/71 (11%)
Query: 128 LREVGLMEIDENGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFIS 187
++E L E + EIE+ +L+ + +H+ LS+ L A + LK+DGV+F+
Sbjct: 26 IKETYLKEYKDLKLEIETINLEIPERF----SHASILSYELN----ASNKLKKDGVVFLR 77
Query: 188 IDDNECANLKI 198
+++ L +
Sbjct: 78 LENEPNLRLPV 88
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 24.6 bits (52), Expect = 7.3
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 425 GNREFILVQIDEEIKEDESAYDFCKKELKSAKPVISDITIERVKRAAQKISQLSKDSGLD 484
G +E I + K+ + ++ + L+ P+ +++ R + ++ +
Sbjct: 487 GFKEVIHYVFYSKEKQQKLGFEVLEDPLELQNPITTELNTLRTSLVCGLLDASLRNK--N 544
Query: 485 LGFKVYTLQDKVQIINDKEE 504
LGFK L +K + N K E
Sbjct: 545 LGFKSIALYEKGSVYNSKRE 564
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 24.3 bits (51), Expect = 9.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 424 KGNREFILVQIDEEIKEDESAYDFCKKELKSAKPVIS-DITIERVKRAAQKISQLSKDSG 482
K N+ I++ KE E DF +K A VIS D I+ ++ K ++K +
Sbjct: 101 KANKVDIIMANFTRTKEREKVVDFANPYMKVALGVISKDGVIKNIEELKDKELIVNKGTT 160
Query: 483 LDLGF 487
D F
Sbjct: 161 ADFYF 165
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 24.3 bits (51), Expect = 9.5
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 472 QKISQLSKDSGLDLGFKVYTLQDKVQIINDKEEITLFNRSDLTPFDKALNLALQCGKTLN 531
QK++ DS L + +L + ++ EITL + T F K+L L + K +
Sbjct: 2 QKLAVFDFDSTLVNAETIESLARAWGVFDEVREITLKAMNGETDFHKSLILRVSKLKNMP 61
Query: 532 QALEIIIKDKLYKCEDAYFCIVCDEEAQEYLAKSKNEMIFLDGYE--EIDLEAFLNLNAS 589
L + + L E A+ I +E K+ + F G++ LNL+A+
Sbjct: 62 LKLAKEVCESLPLFEGAFELISALKE------KNYKVVCFSGGFDLATNHYRDLLNLDAA 115
Query: 590 FKERLSV 596
F L V
Sbjct: 116 FSNTLIV 122
>ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobacter pylori J99]
Length = 416
Score = 24.3 bits (51), Expect = 9.5
Identities = 21/78 (26%), Positives = 32/78 (40%), Gaps = 14/78 (17%)
Query: 516 FDKALNLALQCGKTLNQALEIIIKDKLYKC------EDAYFCIVCDEEAQEYLAKSKNEM 569
+DK L + L CG L ++ + K Y+ D Y D E +A+S
Sbjct: 110 YDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVGLDGYI----DYEEALKIAQSVKPQ 165
Query: 570 IFLDGY----EEIDLEAF 583
I + G+ EID + F
Sbjct: 166 IIVCGFSAYPREIDFKKF 183
>ref|NP_222859.1| putative [Helicobacter pylori J99]
Length = 193
Score = 24.3 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 566 KNEMIFLDGYEEIDLEAFLNLNASFK 591
KN++++ G+ E+D LN NA K
Sbjct: 35 KNDLVYFKGHNEVD----LNFNAMLK 56
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 24.3 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 78 IIIGDNLDALKLLKSAYSEKIKMI 101
IIIGDN +A+K++K + K +
Sbjct: 207 IIIGDNTNAMKIIKKDIQKGYKAL 230
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 694,454
Number of Sequences: 1491
Number of extensions: 35730
Number of successful extensions: 171
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 40
length of query: 598
length of database: 494,079
effective HSP length: 83
effective length of query: 515
effective length of database: 370,326
effective search space: 190717890
effective search space used: 190717890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)