BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645219|ref|NP_207389.1| hypothetical protein
[Helicobacter pylori 26695]
         (54 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223259.1|  putative [Helicobacter pylori J99]              106  1e-25
ref|NP_223990.1|  putative [Helicobacter pylori J99]               22  3.5
ref|NP_222735.1|  putative [Helicobacter pylori J99]               22  3.5

>ref|NP_223259.1| putative [Helicobacter pylori J99]
          Length = 54

 Score =  106 bits (264), Expect = 1e-25
 Identities = 53/54 (98%), Positives = 54/54 (99%)

Query: 1  MEFLGLILSLAAILIAFKKPEKENWAFGILMVVWLVELIIFIAHSSSVLPNMNL 54
          MEFLGLILSLAAILIAFKKPEKENWAFGIL+VVWLVELIIFIAHSSSVLPNMNL
Sbjct: 1  MEFLGLILSLAAILIAFKKPEKENWAFGILIVVWLVELIIFIAHSSSVLPNMNL 54



>ref|NP_223990.1| putative [Helicobacter pylori J99]
          Length = 1164

 Score = 21.6 bits (44), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (56%)

Query: 17  FKKPEKENWAFGILMVVWLVELIIFIAH 44
           FKKP KEN    I++   L++    IA+
Sbjct: 424 FKKPLKENDTLKIILTNTLIQPSEIIAY 451



>ref|NP_222735.1| putative [Helicobacter pylori J99]
          Length = 93

 Score = 21.6 bits (44), Expect = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (47%), Gaps = 1/29 (3%)

Query: 2  EFLGLILSLA-AILIAFKKPEKENWAFGI 29
          E L  IL +   I + FK P   NW  G+
Sbjct: 64 EILFTILGVVFGIFLFFKAPSLANWFMGV 92



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.330    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,820
Number of Sequences: 1491
Number of extensions: 1382
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 494,079
effective HSP length: 30
effective length of query: 24
effective length of database: 449,349
effective search space: 10784376
effective search space used: 10784376
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 41 (20.4 bits)