BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645221|ref|NP_207391.1| hypothetical protein
[Helicobacter pylori 26695]
(192 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223261.1| putative [Helicobacter pylori J99] 362 e-102
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 31 0.024
ref|NP_222946.1| putative OCTAPRENYL-DIPHOSPHATE SYNTHASE [... 28 0.16
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 28 0.21
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.27
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 27 0.27
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 26 0.79
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 25 1.0
ref|NP_224066.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 25 1.8
ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEI... 24 3.0
ref|NP_223715.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223491.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicoba... 23 5.1
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 23 5.1
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 8.7
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 22 8.7
>ref|NP_223261.1| putative [Helicobacter pylori J99]
Length = 192
Score = 362 bits (929), Expect = e-102
Identities = 181/192 (94%), Positives = 189/192 (98%)
Query: 1 MLEKSFLKSKQLFLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSH 60
MLEKSFLKSKQL LCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRS+Y+TQGVDSSH
Sbjct: 1 MLEKSFLKSKQLVLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSQYLTQGVDSSH 60
Query: 61 IVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDS 120
IVDGK TEEIEKIATKRATIRVAQNIVHKLKEAYLSK+NRIKQKITNEMFIQMT+PI+DS
Sbjct: 61 IVDGKATEEIEKIATKRATIRVAQNIVHKLKEAYLSKSNRIKQKITNEMFIQMTKPIFDS 120
Query: 121 LMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDS 180
LMNVDRLGIYINPNNEEVFALVRAR FDKDALSEGLHKMSLD+QAVSILV+KVEEIFKDS
Sbjct: 121 LMNVDRLGIYINPNNEEVFALVRARSFDKDALSEGLHKMSLDDQAVSILVSKVEEIFKDS 180
Query: 181 VNYGDVKVPIAM 192
+NYGDVKVPIAM
Sbjct: 181 INYGDVKVPIAM 192
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 30.8 bits (68), Expect = 0.024
Identities = 28/85 (32%), Positives = 42/85 (48%), Gaps = 14/85 (16%)
Query: 44 MLQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQ 103
+L +Y ++GV +VD K E+I + + VAQNIV L + LSK I+Q
Sbjct: 119 LLDLSQQYASEGVIKPLVVDVGK----EQIGITDSMLLVAQNIVLALGQVDLSK---IQQ 171
Query: 104 KITNEMFIQMTQPIYDSLMNVDRLG 128
N Q +Y+++M V LG
Sbjct: 172 NNGN-------QQLYENIMKVMLLG 189
>ref|NP_222946.1| putative OCTAPRENYL-DIPHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 307
Score = 28.1 bits (61), Expect = 0.16
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 28 PNTSQRNSFLQDVPYWMLQNRSEYITQGV-------DSSHIVDGKKTEEIEKIATKRATI 80
PN S +PY +L + QG+ DS I++ K E+ ++ T+
Sbjct: 215 PNFSDFKEGKTTLPYLLLYEKLNQHEQGLLISYFKQDSHEIIEWTK-EKFKQHGIIEETL 273
Query: 81 RVAQNIVHKLKEAYLSKTNRIKQKITNEM 109
++AQ K EA + N I +K+ ++
Sbjct: 274 KIAQVYSKKALEAIKGENNLILEKLAQDV 302
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 27.7 bits (60), Expect = 0.21
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 79 TIRVAQNIVHKLKEAYLSKT----NRIKQKITNEMFIQMTQPIYDSLMNVDRLGIYINPN 134
T V +++ K+ EA+L R + + +F+ P YD ++ D +++N
Sbjct: 93 TTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDV 152
Query: 135 NEEVF 139
+E F
Sbjct: 153 SESFF 157
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 27.3 bits (59), Expect = 0.27
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 79 TIRVAQNIVHKLKEAYL-SKTNRIKQKITNEMF-IQMTQPIYDSLMNVDRLGIYINPNNE 136
T ++ NI L Y+ S N ++ K+ NE + +T P YD+L N
Sbjct: 2 TAKIKPNIQSLLNNFYVDSCVNFMQHKLQNESIDMILTSPPYDNLRNYQGYTFAFENIAN 61
Query: 137 EVFALVRARG 146
E+F +++ G
Sbjct: 62 EIFRVIKKGG 71
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 27.3 bits (59), Expect = 0.27
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 82 VAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDSL-MNVDRLGIYINPNNEEVFA 140
+A N + Y ++ K + E FI++ + D+L +N++ G I +N
Sbjct: 605 IALNYSNTDPAIYQQISDNPTSKESKERFIELLKQAKDNLSINLNEEGKVIIQDNMHSNT 664
Query: 141 LVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYGD 185
++ FDKDA + + D ++ + I K SVN+ D
Sbjct: 665 KMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFD 709
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 25.8 bits (55), Expect = 0.79
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 84 QNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVR 143
+N+ K Y + + + + Q YD L+ D + ++ P E
Sbjct: 422 ENLKENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNE------ 475
Query: 144 ARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSV 181
+DK + H SL ++ + +V++ FKD +
Sbjct: 476 ---YDKTPFRDASHSESLKELGLAEIHDEVKDQFKDLI 510
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 25.4 bits (54), Expect = 1.0
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 5/61 (8%)
Query: 92 EAYLSKTNRIKQKITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDA 151
E YLS +++++I E + T+ D L + L INP + E+ +L + FD +A
Sbjct: 251 EVYLSVPLKLQREI--ETLLDKTK---DKLRAKEILVGIINPKSGEILSLASSNRFDPNA 305
Query: 152 L 152
+
Sbjct: 306 I 306
>ref|NP_224066.1| putative [Helicobacter pylori J99]
Length = 113
Score = 25.0 bits (53), Expect = 1.3
Identities = 18/79 (22%), Positives = 36/79 (44%), Gaps = 1/79 (1%)
Query: 2 LEKSFLKSKQLFLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSHI 61
+EK+ K +++ +CG+ ++L +S R + L+ V +R E I G +
Sbjct: 33 IEKTQTKDEKILVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDRIE-IKAGELKATF 91
Query: 62 VDGKKTEEIEKIATKRATI 80
+D K + +I K +
Sbjct: 92 IDTDKVYVLLRITKKHVAL 110
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 24.6 bits (52), Expect = 1.8
Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 3/59 (5%)
Query: 60 HIVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIY 118
H G K K T + + +AQNIV+++KE + +R IT F+ +P Y
Sbjct: 501 HSTRGSKVTLACKTGTAQV-VEIAQNIVNRMKEKDMEYFHRSHAWIT--AFLPYEKPKY 556
>ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
J99]
Length = 321
Score = 23.9 bits (50), Expect = 3.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 135 NEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDS 180
N+EV ++ GF +++GL L VS+ K + + K S
Sbjct: 87 NKEVALVLSTNGFSLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKIS 132
>ref|NP_223715.1| putative [Helicobacter pylori J99]
Length = 174
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 31 SQRNSFLQDVPYWMLQNRSEYITQGVDSSHIVDGK---KTEEIEKI 73
S +N L PY+ L+ + Y+T ++ + K EEI+KI
Sbjct: 99 SFKNDALIKTPYFALKKQGFYLTDSAPTNRLGVSKIIIAEEEIQKI 144
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/43 (32%), Positives = 17/43 (38%)
Query: 73 IATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQ 115
I T R I HK+ E Y + RI N + Q TQ
Sbjct: 347 ITTSCLKARHIDEIKHKIIEVYECFSKRIPTSSLNSVIFQATQ 389
>ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 23.1 bits (48), Expect = 5.1
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 45 LQNRSEYITQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKL----KEAYLSKTNR 100
L++ E + + + + + K+ EE+ + + T + I H + K +S R
Sbjct: 7 LESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYR 66
Query: 101 IKQKITNEMFI 111
I + E FI
Sbjct: 67 ILNFLEKENFI 77
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 23.1 bits (48), Expect = 5.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 135 NEEVFALVRA-RGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDSVNYGDVKVPIAM 192
NEE L+ A D+ S H M+L+ + +I + +E+ V KV +A+
Sbjct: 121 NEEKNQLLHAITALDEKMKSSENHLMALEKELSAIAIDIAKEVILKEVEDNSQKVALAL 179
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 22.3 bits (46), Expect = 8.7
Identities = 14/26 (53%), Positives = 17/26 (64%), Gaps = 2/26 (7%)
Query: 131 INPNN-EEVFALVRARGFDKDALSEG 155
I PN EEV+ V AR +K+ LSEG
Sbjct: 285 IQPNRIEEVYHRV-ARNMEKELLSEG 309
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 8.7
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 92 EAYLSKTNRIKQKITNEMFIQMTQPIYDSLMNVDRLG-IYINPNNEEVF--ALVR-ARGF 147
E + K +K++ +++ + +Q I+ ++ + G ++I VF +L + AR
Sbjct: 87 ERFTQKALELKEQFGSQVKSERSQKIFLEFVSANPTGPLHIGHARGAVFGDSLAKIARFL 146
Query: 148 DKDALSEGLHKMSLDNQ----AVSILVAKVEEIFKDSVNYGDV 186
+ L E + + +Q VS+ +A E + K+SV Y +V
Sbjct: 147 GHEVLCE-YYVNDMGSQIRLLGVSVWLAYKEHVLKESVTYPEV 188
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,211
Number of Sequences: 1491
Number of extensions: 7755
Number of successful extensions: 33
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 494,079
effective HSP length: 73
effective length of query: 119
effective length of database: 385,236
effective search space: 45843084
effective search space used: 45843084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)