BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644691|ref|NP_206861.1| hypothetical protein
[Helicobacter pylori 26695]
(189 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222778.1| putative [Helicobacter pylori J99] 325 5e-91
ref|NP_223065.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_224115.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 25 1.7
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 24 2.2
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 24 2.9
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 24 2.9
ref|NP_222796.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223560.1| putative [Helicobacter pylori J99] 23 3.8
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 23 5.0
ref|NP_223261.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 22 8.5
ref|NP_223300.1| putative [Helicobacter pylori J99] 22 8.5
>ref|NP_222778.1| putative [Helicobacter pylori J99]
Length = 189
Score = 325 bits (833), Expect = 5e-91
Identities = 161/189 (85%), Positives = 174/189 (91%)
Query: 1 MMTKNAYAFVVIEESVMVFKRTKDEGLMPIFEGFVPLKEGFLKSFKERCNLEFLENLDLL 60
MMTKNAYAFVVIE+S+MVFK KD+GL+PI EGFVPLKEGFL+SFKERCNL+FLENLDLL
Sbjct: 1 MMTKNAYAFVVIEKSIMVFKCAKDKGLIPITEGFVPLKEGFLRSFKERCNLDFLENLDLL 60
Query: 61 FLYDKPSAHEIFSLCKELKNSIWDRKLVVALVEALEGFKDWNLSLKIEDKRSNSLGNGTK 120
FLYD E+FSLCK+LKNSIWDRKLVV LVEALEGFK NLSLKIED+ SNSLGNG +
Sbjct: 61 FLYDYQFPSEVFSLCKDLKNSIWDRKLVVVLVEALEGFKGLNLSLKIEDRHSNSLGNGVQ 120
Query: 121 KLLTNADLGSDYKTIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK 180
KLLTNADLGS++K IVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK
Sbjct: 121 KLLTNADLGSNHKPIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK 180
Query: 181 KPDFDEENF 189
KPD +EENF
Sbjct: 181 KPDSNEENF 189
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 25.8 bits (55), Expect = 0.77
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 38 KEGFLKSFKERCNLEFLENLDLLFLYDKPSAHEIFSLCKELKN 80
K+G L+ F N EF+E LD + + +K AH+ C E N
Sbjct: 304 KDGNLQVFMTTHNQEFIEILDQV-IREKDFAHQTKLFCLEQYN 345
>ref|NP_224115.1| putative [Helicobacter pylori J99]
Length = 238
Score = 25.4 bits (54), Expect = 1.0
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 69 HEIFSLCKELKNSIWDRKLVVALVEALEGFKDWNLSLKIEDKRSNS 114
+E SLC ++ S+ KL + + ++ FKD N L + R+NS
Sbjct: 152 YEALSLCLVIE-SLKSVKLTLETLRFVQSFKDKNAHLMLGAARNNS 196
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 24.6 bits (52), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 9/35 (25%)
Query: 31 FEGFVPLKEGF---------LKSFKERCNLEFLEN 56
F G+ LKE F LK FKE+ +LEFL +
Sbjct: 93 FTGYRHLKEYFENAEEKGRILKGFKEKFDLEFLNS 127
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 24.3 bits (51), Expect = 2.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 131 DYKTIVIDSMKTYHQSQQEKYKRERGET 158
DY+ + ++S++ HQ EK +E+ +T
Sbjct: 291 DYQRLALESLRFGHQKILEKIAKEKPKT 318
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 23.9 bits (50), Expect = 2.9
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 128 LGSDYKTIVIDSMKTYHQSQQEKY-----KRERGETLE----VRPTTPPSY 169
+G Y T++ D++K Y+ Q E+ E G+ +E +R +P +Y
Sbjct: 19 IGHAYTTLIADTLKKYYTLQGEEVFFLTGTDEHGQKIEQSARLRNQSPKAY 69
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 23.9 bits (50), Expect = 2.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 32 EGFVPLKEGFLKSFKERCNLEFLENLDLLFLYDKPSAHEIFSLCKELKNSI 82
E + + GF+ + KE NL E + YD SA E+ LC++ + SI
Sbjct: 141 ETYYSVGGGFVYTEKELDNLSE-EGENESVAYDFSSAKELLELCQKHQKSI 190
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 23.9 bits (50), Expect = 2.9
Identities = 18/85 (21%), Positives = 34/85 (39%), Gaps = 13/85 (15%)
Query: 102 NLSLKIEDKRSNSLGNGTKKLLTNADLGSDYKTIVIDSMKTYHQSQQEKYKRERGETLEV 161
N ++++ DK N+L L L S+ + V ++ + Q L
Sbjct: 350 NKAMEVRDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQ-------------LSH 396
Query: 162 RPTTPPSYGGGSIRISGDKKPDFDE 186
+Y GS++I GD + D ++
Sbjct: 397 SSDVVGNYLDGSLKIDGDDRDDLND 421
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 23.5 bits (49), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Query: 23 KDEGLMPIFEG-FVPLKEGFLKSFKERCNLEFLENLDLLFLY 63
KD+ P E PLKE LKS++E + E E + LY
Sbjct: 482 KDQPKEPFKEQELTPLKENALKSYQENTDHENQETSMQITLY 523
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 23.1 bits (48), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 82 IWDRKLVVALVEALEGFKDWNLSLKIEDKRSNSLGNGTKKLLTN 125
+ D K +A V A + K+W+ +LKI + LG G +K N
Sbjct: 303 VMDDKKTIAQVIA-DCSKEWDDNLKITEYVRFELGEGIEKKTEN 345
>ref|NP_223261.1| putative [Helicobacter pylori J99]
Length = 192
Score = 22.7 bits (47), Expect = 6.5
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 54 LENLDLLFLYDKPSAHEIFSLCKEL------------KNSIWDRKLVVALVEALEGFKD 100
L N+D L +Y P+ E+F+L + K S+ D+ + + + + E FKD
Sbjct: 121 LMNVDRLGIYINPNNEEVFALVRARSFDKDALSEGLHKMSLDDQAVSILVSKVEEIFKD 179
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 22.3 bits (46), Expect = 8.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 12 IEESVMVFKRTKDEGLM 28
+EE ++ F +T+DEGL+
Sbjct: 228 LEEKLIDFFKTRDEGLL 244
>ref|NP_223300.1| putative [Helicobacter pylori J99]
Length = 225
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/21 (42%), Positives = 12/21 (56%)
Query: 31 FEGFVPLKEGFLKSFKERCNL 51
F G+ KE F+KS + NL
Sbjct: 130 FSGYPDCKEDFIKSIEHALNL 150
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,121
Number of Sequences: 1491
Number of extensions: 10228
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 13
length of query: 189
length of database: 494,079
effective HSP length: 73
effective length of query: 116
effective length of database: 385,236
effective search space: 44687376
effective search space used: 44687376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)