BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645228|ref|NP_207398.1| hypothetical protein
[Helicobacter pylori 26695]
(189 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223268.1| putative [Helicobacter pylori J99] 374 e-106
ref|NP_223513.1| putative [Helicobacter pylori J99] 31 0.024
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 29 0.091
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 27 0.34
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 24 2.2
ref|NP_224114.1| putative component of cation transport for... 24 2.9
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 22 8.5
ref|NP_223307.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_223174.1| putative Outer membrane protein [Helicobac... 22 8.5
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 22 8.5
ref|NP_222872.1| putative histidine kinase sensor protein [... 22 8.5
>ref|NP_223268.1| putative [Helicobacter pylori J99]
Length = 205
Score = 374 bits (960), Expect = e-106
Identities = 181/189 (95%), Positives = 184/189 (96%)
Query: 1 MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKTYHDASLGF 60
+AKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKR PIRPKNRPPILMDK YHDASLGF
Sbjct: 17 LAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRFPIRPKNRPPILMDKIYHDASLGF 76
Query: 61 QVGFVLKKKALLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDK 120
G+VLKKKALLGGYLDAGMGDSYFMSAG +AGVRLFKGWVIPKIALGYQLQILGAKIDK
Sbjct: 77 DAGYVLKKKALLGGYLDAGMGDSYFMSAGLVAGVRLFKGWVIPKIALGYQLQILGAKIDK 136
Query: 121 YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT 180
YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT
Sbjct: 137 YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT 196
Query: 181 FYDFTRFLG 189
FYDFTRFLG
Sbjct: 197 FYDFTRFLG 205
>ref|NP_223513.1| putative [Helicobacter pylori J99]
Length = 245
Score = 30.8 bits (68), Expect = 0.024
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 71 LLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDKYQFNI 125
+L G + AG+G+S +S GF + + G V+ +AL LGAK +K F I
Sbjct: 65 MLLGAITAGLGNSLSVSMGFRGVLLMSMGIVLILLAL------LGAKAEKLSFQI 113
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 28.9 bits (63), Expect = 0.091
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 21 SFKIGYLYQHAETTKRSPIRPKN-RPPILMDKTYHDASLGFQVGFVLKKKALLGGYL-DA 78
S+K +L ET K I+ KN P +L K + + GF L K L+GGYL D+
Sbjct: 160 SYKAHFLQ---ETLKSLEIQLKNYAPKLLNSKEVLNFYAEYINGFELPLKPLVGGYLSDS 216
Query: 79 GMGDS------YFMSAGF-------MAGVRLFKGWVIPKIALG 108
+ S YF+ F + G++ ++ I IA+G
Sbjct: 217 YIASSITFEKDYFIQESFNQKTYNRLIGIKAYESERITSIAVG 259
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 26.9 bits (58), Expect = 0.34
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 13 EPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPIL----MDKTYHDASLGFQVGFVLKK 68
+P Y+ GYL QH++ R RP +L +D Y D G ++G K
Sbjct: 95 QPANWYYMGRWEGYLMQHSQNWTREQKAQNARPYVLYNLYLDYQYKDI-FGIKLGRYPSK 153
Query: 69 KALLGGY 75
L G+
Sbjct: 154 ALFLSGF 160
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 24.3 bits (51), Expect = 2.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 120 KYQFNIQSAVGSVGLFFNAAKN 141
K QFN+ ++ S LFF A+ N
Sbjct: 225 KQQFNLHQSLDSASLFFMASLN 246
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 23.9 bits (50), Expect = 2.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 71 LLGGYLDAGMGDSYFMSAGF 90
+LGGY++ G+ SY +SA F
Sbjct: 374 ILGGYVNVGVPFSYQVSATF 393
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 22.3 bits (46), Expect = 8.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 49 MDKTYHDASLGFQVGFVLKKKALLGGYLDAGMGDSYFMS 87
+D +S+GF VGF L + +G L + F++
Sbjct: 254 IDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFIN 292
>ref|NP_223307.1| putative [Helicobacter pylori J99]
Length = 97
Score = 22.3 bits (46), Expect = 8.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 154 FYFIQSRFSKAFGTPRLNIYSVGITFTFYDFT 185
FYF++SRF F V I F D T
Sbjct: 54 FYFLRSRFKLVFNGLDFAPLVVVIVLKFLDLT 85
>ref|NP_223174.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 406
Score = 22.3 bits (46), Expect = 8.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 129 VGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPR 169
VGS GL +FG+ +R P +I++ SK G R
Sbjct: 332 VGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQR 372
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 22.3 bits (46), Expect = 8.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 49 MDKTYHDASLGFQVGFVLKKKALLGGYLDAGMGDSYFMS 87
+D +S+GF VGF L + +G L + F++
Sbjct: 259 IDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFIN 297
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 22.3 bits (46), Expect = 8.5
Identities = 8/29 (27%), Positives = 16/29 (54%)
Query: 134 LFFNAAKNFGLSIEARGGIPFYFIQSRFS 162
+FF F +++ + G +YF+ S+ S
Sbjct: 5 IFFKVVALFMITLFSFGAFAYYFVSSQIS 33
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.145 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,256
Number of Sequences: 1491
Number of extensions: 9839
Number of successful extensions: 32
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 12
length of query: 189
length of database: 494,079
effective HSP length: 73
effective length of query: 116
effective length of database: 385,236
effective search space: 44687376
effective search space used: 44687376
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)