BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644640|ref|NP_206808.1| pantoate-beta-alanine
ligase (panC) [Helicobacter pylori 26695]
(276 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222728.1| PANTOATE--BETA-ALANINE LIGASE [Helicobacte... 499 e-143
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 28 0.26
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 27 0.45
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 27 0.45
ref|NP_223516.1| putative [Helicobacter pylori J99] 27 0.77
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 26 1.0
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 26 1.0
ref|NP_223761.1| putative [Helicobacter pylori J99] 26 1.0
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 26 1.0
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 25 1.7
ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylo... 25 2.9
ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicob... 23 6.5
ref|NP_223405.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 23 6.5
ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99] 23 6.5
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 8.5
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 8.5
ref|NP_223860.1| putative [Helicobacter pylori J99] 23 8.5
ref|NP_223657.1| putative [Helicobacter pylori J99] 23 8.5
ref|NP_223032.1| KETOL-ACID REDUCTOISOMERASE [Helicobacter ... 23 8.5
>ref|NP_222728.1| PANTOATE--BETA-ALANINE LIGASE [Helicobacter pylori J99]
Length = 276
Score = 499 bits (1285), Expect = e-143
Identities = 248/276 (89%), Positives = 262/276 (94%)
Query: 1 MRVLETIVALREYRKSLEESVGFVPTMGALHKGHQSLIERSLKENSHTIVSVFVNPTQFG 60
MR LETI LREYRKSL+ESVGFVPTMGALH+GHQSLIERSLKENSHTIVSVFVNPTQFG
Sbjct: 1 MRALETIATLREYRKSLKESVGFVPTMGALHRGHQSLIERSLKENSHTIVSVFVNPTQFG 60
Query: 61 ANEDFNAYPRPLEKDLALCEKLGVNAVFVPKIGEMYPYEAEQRLKLYAPKFLSSSLEGAM 120
ANEDF+AYPRPLEKDLALCEK GVNAVF PKIGEMYPYEA+QRLKLYAP FLS SLEGA+
Sbjct: 61 ANEDFSAYPRPLEKDLALCEKSGVNAVFAPKIGEMYPYEAKQRLKLYAPAFLSHSLEGAV 120
Query: 121 RKGHFDGVVQIVLKMFHLVNPTRAYFGKKDAQQLLIIEHLVKDLLLDIEIAPCEIVRDDD 180
RKGHFDGVVQ+VL++FHL NPTRAYFGKKDAQQLLII+HLV+DLLLDIEIAPCEIVRD D
Sbjct: 121 RKGHFDGVVQVVLRLFHLTNPTRAYFGKKDAQQLLIIQHLVQDLLLDIEIAPCEIVRDSD 180
Query: 181 NLALSSRNVYLNATQRKQALAIPKALEKIQQAIDKGEKACEKLKKLGLEILETLEVDYLE 240
NLALSSRNV LNAT+RKQALAIPKALEKIQQAID+GEKACEKLKKLGLEIL+ LEVDYLE
Sbjct: 181 NLALSSRNVCLNATERKQALAIPKALEKIQQAIDRGEKACEKLKKLGLEILKNLEVDYLE 240
Query: 241 CCNHKLEPLTIIEPTNTLILVAARVGKTRLLDNLWV 276
CCNHKLEPL IEP NTL+LVAARVGKTRLLDNLWV
Sbjct: 241 CCNHKLEPLKTIEPANTLVLVAARVGKTRLLDNLWV 276
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 28.1 bits (61), Expect = 0.26
Identities = 28/106 (26%), Positives = 48/106 (44%), Gaps = 12/106 (11%)
Query: 145 YFGKKDAQQLL-----IIEHLVKDLL----LDIEIAPCEIVRDDDNLALSSRNVYLNATQ 195
+F KDA + +IE L ++ L LD+ E + D + L+A Q
Sbjct: 431 HFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIKKAQNLLDAIQ 490
Query: 196 RKQALAIPKALEKIQ-QAIDKGEKACEKLKKLGLEILETLEVDYLE 240
+ + + + + + + I KG A + L K GL +LE E ++LE
Sbjct: 491 KSKNPPLWRLINALGIEHIGKG--ASKTLAKYGLNVLEKSEAEFLE 534
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 27.3 bits (59), Expect = 0.45
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 198 QALAIPKALEKIQQAIDKGEKACEKLKKLGLEILETLE-VDYLECCNHKLEPLTIIEPTN 256
Q++ P+ALE+IQ+ E E+ K L++LE + + LE H LE +
Sbjct: 240 QSIISPRALEEIQELASLNELDDERFK--FLKVLENAQGYEDLEIHVHALEGFIALHSNR 297
Query: 257 TLILVAARVGKTRLLDN 273
+ L+A KT +LDN
Sbjct: 298 KITLLAP--NKT-ILDN 311
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 27.3 bits (59), Expect = 0.45
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 3/45 (6%)
Query: 175 IVRDDDNLALSSRNVYLNATQRKQALAIPKALEKIQQAIDKGEKA 219
+VR + +N+ T+R PK LE ++Q IDK E+A
Sbjct: 280 LVRLKGRYTPTQKNIIFEKTER---FITPKLLEALKQVIDKNEQA 321
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 26.6 bits (57), Expect = 0.77
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 8/67 (11%)
Query: 3 VLETIVALREYRKSLEESVGFVPTMGALHKGHQSLIERSLKENSHTIVSVFVNPTQFGAN 62
+L+ + AL+E EE+ + A+ K HQSL L + + I+SV +G
Sbjct: 145 ILKEMSALQEVNLLYEEN-----SKDAIKKAHQSLSTIPLSSSLYAIISVL---KHYGML 196
Query: 63 EDFNAYP 69
ED P
Sbjct: 197 EDIQQNP 203
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 26.2 bits (56), Expect = 1.0
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 2 RVLETIVALREYRKSLEESVGFVPTMGALHKGHQSLIERSLKENSHTIVSV 52
R+ + IVA + + LEE GF+ + +SL+ SLK++ +T +++
Sbjct: 428 RIRDNIVAAH-FGEDLEEIEGFLERFDKANLKEKSLMLESLKKSKNTAIAL 477
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 26.2 bits (56), Expect = 1.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 59 FGANEDFNA----YPRPLEKDLALCEKLGV 84
FG +D+ Y +P KD+ CEK GV
Sbjct: 1441 FGPTKDYECLCGKYKKPRFKDIGTCEKCGV 1470
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 26.2 bits (56), Expect = 1.0
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 182 LALSSRNVYLNATQRKQALAIPKA-LEKIQQAIDKGEKACEKLKKLGLEILETLEVDYLE 240
LA + + L + +A A+ K +I++ ID+ + + LG++ L V+Y++
Sbjct: 967 LANAEKLAKLETEKAFKAEAVKKLDFNEIKKLIDESPRTGSSMPILGMQNLNAEAVEYIQ 1026
Query: 241 CCNHKLEPLTIIEPT 255
NHK + IEP+
Sbjct: 1027 -KNHKRIAVEKIEPS 1040
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 26.2 bits (56), Expect = 1.0
Identities = 23/86 (26%), Positives = 39/86 (44%), Gaps = 15/86 (17%)
Query: 204 KALEKIQQAIDKGEKACEKLKKLGLEILETLEVDYLE-CCNHKLEPL------------T 250
K L+K +++ KG +K LE LE +D + +KL+P+
Sbjct: 132 KELQKTLESLRKGRTIQDKNDDSNLESLEKFGIDLTQKALENKLDPVIGRDEEIIRMMQI 191
Query: 251 IIEPT--NTLILVAARVGKTRLLDNL 274
+I T N ++L VGKT +++ L
Sbjct: 192 LIRKTKNNPILLGEPGVGKTAVVEGL 217
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 25.4 bits (54), Expect = 1.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 73 EKDLALCEKLGVNAVFVPKIGEMYPYEAEQRLKLYAPKFLSSSLEGA 119
++ L L E+L A++ + E Y +LY K S ++GA
Sbjct: 24 DESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGA 70
>ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 402
Score = 24.6 bits (52), Expect = 2.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 10 LREYRKSLEESV---GFVPTMGALHKGHQSLIER 40
+R+Y ++ E + GF PT LH GH LI++
Sbjct: 29 VRKYYETNERFIVKAGFDPTAPDLHLGHTVLIQK 62
>ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 23.5 bits (49), Expect = 6.5
Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 14/62 (22%)
Query: 101 EQRLKLYAPKFLSSSLEGAMRKGHF--------DGVVQ----IVLKMFHLV--NPTRAYF 146
E+++K Y FL+S + GAM K F +G++ I L + H V + TR YF
Sbjct: 385 EKKVKYYRLIFLASVMVGAMAKIDFVWNLADLSNGLMAIPNLIALILLHKVVYSETRWYF 444
Query: 147 GK 148
K
Sbjct: 445 SK 446
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.5 bits (49), Expect = 6.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 198 QALAIPKALEKIQQAIDKGEKACEKLKKLGLE---ILETLEVDY 238
QAL + +++KI ID+ + LK L E ++ +++ DY
Sbjct: 166 QALEVKSSIQKISSVIDEQKTRESTLKSLQTEQNKLILSMQKDY 209
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 23.5 bits (49), Expect = 6.5
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 163 DLLLDIEIAPCEIVRDDDNLALSSRNVYLNATQRKQALAIPKALEKIQQAIDKGEKA 219
+L+ + E ++ D L ++ + ++A K+ KALEK ++A ++ +KA
Sbjct: 105 NLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKA 161
>ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99]
Length = 538
Score = 23.5 bits (49), Expect = 6.5
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 13/70 (18%)
Query: 21 VGFVPTMGALHKGHQSLIERSLKENSHTIVSVFVNPTQFGANEDFNAYPRPLEKDLALCE 80
+GFV +L + ++SLIE + +H V + ++ +E+FN + DL
Sbjct: 293 IGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNI---EWLDSENFNE-----KTDLE--- 341
Query: 81 KLGVNAVFVP 90
GV+A+ VP
Sbjct: 342 --GVDAILVP 349
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 23.1 bits (48), Expect = 8.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 157 IEHLVKDLLLDIEIAPCEIVRDDDNLALSSRNVY 190
+EH+V+D++LD+ P + N L + +VY
Sbjct: 481 LEHIVQDIVLDMAKLP-RLSNGKGNAMLVAESVY 513
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.1 bits (48), Expect = 8.5
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 30 LHKGHQSLIERSLKENSHTIVSVFVNPTQFG-ANEDFNAYPR-----PLEKDLALCEKLG 83
LH + + +K+N+ T S +NP+ G E N Y P +C K
Sbjct: 410 LHLYKFTTTPKDIKDNTDTSESRLINPSVLGLVFEKLNGYKEGSFYTPSFITSYMC-KES 468
Query: 84 VNAVFVPKIGEMYPYEAEQRLKLYAPKFLSSSLEGAMRK 122
+ + + K + Y E ++ +L +L +S + RK
Sbjct: 469 ITTIVLDKFNQKYNIECDKLKEL--KNYLKNSYKEDKRK 505
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 23.1 bits (48), Expect = 8.5
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 231 LETLEVDYLECCNHKLEPLTI 251
++TL+ + C NHKLE LT+
Sbjct: 34 VKTLKDITIWCANHKLECLTL 54
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 23.1 bits (48), Expect = 8.5
Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 8/65 (12%)
Query: 219 ACEKLKKLGLEILETLEVDY--------LECCNHKLEPLTIIEPTNTLILVAARVGKTRL 270
AC + LGL++ ETL Y + H+ E + + NT+I + T L
Sbjct: 60 ACHIVNSLGLKVQETLLGTYKNKIVVACKDFTTHQYELVDFLSLKNTMIELEKSGKDTNL 119
Query: 271 LDNLW 275
D L+
Sbjct: 120 NDVLY 124
>ref|NP_223032.1| KETOL-ACID REDUCTOISOMERASE [Helicobacter pylori J99]
Length = 330
Score = 23.1 bits (48), Expect = 8.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 198 QALAIPKALEKIQQAIDKGEKACEKLKKLGLEILETLEV 236
QAL + + K++ + +G + K KK G E+L E+
Sbjct: 33 QALNLRDSKVKVRIGLYQGSLSVSKAKKEGFEVLGVKEL 71
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,162
Number of Sequences: 1491
Number of extensions: 12856
Number of successful extensions: 53
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 20
length of query: 276
length of database: 494,079
effective HSP length: 76
effective length of query: 200
effective length of database: 380,763
effective search space: 76152600
effective search space used: 76152600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)