BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644692|ref|NP_206862.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222779.1| putative [Helicobacter pylori J99] 165 2e-43
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 29 0.020
ref|NP_222780.1| putative [Helicobacter pylori J99] 29 0.020
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 27 0.057
ref|NP_223994.1| putative [Helicobacter pylori J99] 26 0.13
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 25 0.28
ref|NP_223643.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 1.4
ref|NP_223600.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helico... 22 1.8
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 22 2.4
ref|NP_223988.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [He... 22 3.1
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 22 3.1
ref|NP_223534.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 21 4.1
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 21 4.1
ref|NP_222894.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 21 4.1
ref|NP_223460.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223252.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 21 5.3
ref|NP_223415.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223156.1| Outer membrane protein [Helicobacter pylor... 20 7.0
ref|NP_223103.1| 30S RIBOSOMAL PROTEIN S15 [Helicobacter py... 20 7.0
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 20 9.1
ref|NP_223421.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 20 9.1
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 20 9.1
ref|NP_222742.1| putative [Helicobacter pylori J99] 20 9.1
>ref|NP_222779.1| putative [Helicobacter pylori J99]
Length = 86
Score = 165 bits (417), Expect = 2e-43
Identities = 80/86 (93%), Positives = 83/86 (96%)
Query: 1 MSRVQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKST 60
MSRVQMDTEEVREFVGHLERFKELL EEVNSL+ HFHNLESW+DARRDKFSEVLDNLK T
Sbjct: 1 MSRVQMDTEEVREFVGHLERFKELLNEEVNSLNGHFHNLESWQDARRDKFSEVLDNLKGT 60
Query: 61 FNEFDEAAQEQIAWLKERIRVLEEDY 86
FNEF+EAAQEQIAWLKERIRVLEEDY
Sbjct: 61 FNEFNEAAQEQIAWLKERIRVLEEDY 86
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 28.9 bits (63), Expect = 0.020
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 21 FKELLREEVNSLSNHFHN-LESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIA-WLKER 78
F++LL+E S NH N E+ DK E + S NE E++ +A L ++
Sbjct: 33 FEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQTQMDSGGNETSESSNGSLADKLFKK 92
Query: 79 IRVLEED 85
R L +D
Sbjct: 93 ARKLVDD 99
Score = 27.7 bits (60), Expect = 0.044
Identities = 17/52 (32%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Query: 21 FKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQI 72
F++LL+E S NH N D D +E + T FDE E+I
Sbjct: 163 FEDLLKESTESSDNHLDNPTESSDNHLDNPTET--KTQETKTHFDEDKPEEI 212
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 28.9 bits (63), Expect = 0.020
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 1 MSRVQMDTEEVREFVGHLERFKELLREE 28
M+ + DTEEV++ VG FK L+EE
Sbjct: 1 MAEWKTDTEEVKKVVGRCREFKRSLQEE 28
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 27.3 bits (59), Expect = 0.057
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 2 SRVQMDTEEVREFVGHLERFKELLREEVNSLSNH-FHNLESWRDARRDKFSEVLDNLKST 60
S + ++ +FV E FKEL+++ + ++ H H E + LDN
Sbjct: 72 SAMMVEINSETDFVAKNEGFKELVKKTLETIKTHNIHTTE-------ELLKSPLDN---- 120
Query: 61 FNEFDEAAQEQIAWLKERIRV 81
F+E QIA + E I V
Sbjct: 121 -KPFEEYLHSQIAVIGENILV 140
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 26.2 bits (56), Expect = 0.13
Identities = 18/87 (20%), Positives = 35/87 (39%), Gaps = 8/87 (9%)
Query: 8 TEEVREFVGHLERFK--------ELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKS 59
++ +RE G LE L+ ++ L N ++ D RD E + L++
Sbjct: 55 SKRLRELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLEN 114
Query: 60 TFNEFDEAAQEQIAWLKERIRVLEEDY 86
F + A K+ +++ +E Y
Sbjct: 115 KFKDMGHYAASDEVNEKQVLKMYQEGY 141
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 25.0 bits (53), Expect = 0.28
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 12/59 (20%)
Query: 5 QMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSE--VLDNLKSTF 61
++D++ REF+G + KELL ++ + W R D F+E V N++ F
Sbjct: 639 KLDSDLEREFLGFINDHKELLDKK----------FKEWCVLRNDYFTELKVFCNIEGPF 687
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 23.1 bits (48), Expect = 1.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 25 LREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERI 79
L++E SN+ HNLE R E ++ ++ +A QI ++K RI
Sbjct: 29 LKQEPPQNSNYSHNLEETNAQRTQSTQENSESKEALL----KAKSGQINYVKTRI 79
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 49 KFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEED 85
KF V D+ F F+E + WLKE R+L+++
Sbjct: 52 KFQGVEDHWDK-FGSFEEYDTFCLGWLKECQRILKDN 87
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 22.7 bits (47), Expect = 1.4
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 27 EEVNSLSNHFHNLES 41
E+V++L H+HN+E+
Sbjct: 127 EKVDNLFKHYHNIEN 141
>ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 314
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 11 VREFVGHLERFKELLREE 28
VR+++G +RFK L ++E
Sbjct: 270 VRDYLGAQKRFKHLFKKE 287
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.9 bits (45), Expect = 2.4
Identities = 15/55 (27%), Positives = 22/55 (39%), Gaps = 5/55 (9%)
Query: 27 EEVNSLSNHFHNLESW-----RDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLK 76
E + LS F+ S D R SE+L + F FD+ ++ LK
Sbjct: 657 ESLKDLSEKFYKTSSLDMFEKSDQRASDISEILGGAIARFARFDDPSKALFEALK 711
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 21.9 bits (45), Expect = 2.4
Identities = 7/14 (50%), Positives = 13/14 (92%)
Query: 27 EEVNSLSNHFHNLE 40
E +N+LS+H++NL+
Sbjct: 13 EYLNTLSHHYYNLD 26
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/32 (28%), Positives = 16/32 (49%)
Query: 55 DNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY 86
+N++ F DE + + KE ++ L DY
Sbjct: 143 ENIQGYFYFIDEGLNKNQNYYKEELQKLSADY 174
>ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 318
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 49 KFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEED 85
KF + D L F + E E + W+ ++ +L ++
Sbjct: 128 KFEDGFDILTKIFEVYFEKGVECLEWINKQTSLLRKN 164
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 21.6 bits (44), Expect = 3.1
Identities = 12/41 (29%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Query: 48 DKFSEVLDNLK----STFNEFDEAAQEQIAWLKERIRVLEE 84
D +E + N K + F EF + ++ K+RI ++EE
Sbjct: 277 DTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEE 317
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 21.2 bits (43), Expect = 4.1
Identities = 7/22 (31%), Positives = 15/22 (67%)
Query: 50 FSEVLDNLKSTFNEFDEAAQEQ 71
FS++ +NLK+ ++ + AQ +
Sbjct: 144 FSQMYENLKTELRKYQKEAQNK 165
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 21.2 bits (43), Expect = 4.1
Identities = 12/54 (22%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 21 FKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFN--EFDEAAQEQI 72
F E +E+ + F L+ W +DK + LK+ + F++A ++++
Sbjct: 100 FLEREKEKAKNEKRPFRYLDEWATLEKDKNHAPVVRLKAPNHAVSFNDAIKKEV 153
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 21.2 bits (43), Expect = 4.1
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 15/52 (28%)
Query: 47 RDKFSEVLDNLKSTFNEFDEA---------------AQEQIAWLKERIRVLE 83
+D F E+L++ K EF E A +Q+A L++ I +LE
Sbjct: 89 KDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLE 140
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 34 NHFHNLESWRDARRDKFSEVLDNLKSTFNE 63
+ F +L + DK +V+DN+K +E
Sbjct: 74 DEFESLNMDSPKQEDKLDKVVDNIKKQESE 103
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 21.2 bits (43), Expect = 4.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 31 SLSNHFHNLESW 42
SL HFH E W
Sbjct: 387 SLQKHFHRSEHW 398
>ref|NP_223460.1| putative [Helicobacter pylori J99]
Length = 206
Score = 20.8 bits (42), Expect = 5.3
Identities = 7/18 (38%), Positives = 13/18 (71%)
Query: 69 QEQIAWLKERIRVLEEDY 86
+EQ AWLK+ + ++E +
Sbjct: 46 KEQEAWLKKTLLAMQEKH 63
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 20.8 bits (42), Expect = 5.3
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 14 FVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVL-----DNLKSTFNEFDEAA 68
F L+ +++E NS +++ + DKF++ + D LKS FD +
Sbjct: 482 FTLDLKSLHSIIQEGENSEVFRRKIIDTIKAQSEDKFTKDVFYATGDTLKSLSLSFDFSN 541
Query: 69 QEQIAW 74
+ I W
Sbjct: 542 PDHIQW 547
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 14 FVGHLERFKELLREE 28
FVG LER +E+ R E
Sbjct: 529 FVGDLERIEEVARFE 543
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 20.4 bits (41), Expect = 7.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 9 EEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLD 55
E VR+ +LE+ K+ L +E L N + R ++ ++ LD
Sbjct: 102 EFVRDEKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQAKALD 148
>ref|NP_223156.1| Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 20.4 bits (41), Expect = 7.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 55 DNLKSTFNEFDEAAQEQIAWL 75
D + FD QEQ+ W+
Sbjct: 186 DRVHMVMGRFDVTEQEQMDWI 206
>ref|NP_223103.1| 30S RIBOSOMAL PROTEIN S15 [Helicobacter pylori J99]
Length = 90
Score = 20.4 bits (41), Expect = 7.0
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 48 DKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84
+K E++ + N+ + + Q+A L ERI++L E
Sbjct: 6 EKKQEIIKAFATKANDTG-SCEVQVALLNERIKLLTE 41
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 22 KELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQE 70
K+L + E L + HN ++A + + ++LK+ + + QE
Sbjct: 817 KQLEKLEKEKLKLNLHNENFVKNAPKSVLEKARESLKTLLEKEGKIQQE 865
>ref|NP_223421.1| putative [Helicobacter pylori J99]
Length = 286
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 12 REFVGHLERFKELLREEVNSLSNHFHNLESWR 43
R F+ E+ +L V++ +HFH L R
Sbjct: 164 RAFMRLGEKKLHVLSHTVSNFLDHFHRLNRLR 195
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 19 ERFKELLREEVNSLSNHFHNLESWRDARRDKFSEV 53
E +ELL+ N ++ F +S KF+ V
Sbjct: 639 ENAQELLKTRYNIMAERFAAYDSQISKANQKFNSV 673
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 72 IAWLKERIRVLEE 84
IAW KE +LEE
Sbjct: 94 IAWAKEHTPMLEE 106
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 31 SLSNHFHNLESWRDARRDKFSEVLDNLK 58
SL N + N + D DK +L+N K
Sbjct: 401 SLINAYDNTIFYNDYLLDKIISMLENAK 428
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,644
Number of Sequences: 1491
Number of extensions: 3401
Number of successful extensions: 32
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of query: 86
length of database: 494,079
effective HSP length: 62
effective length of query: 24
effective length of database: 401,637
effective search space: 9639288
effective search space used: 9639288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)