BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645233|ref|NP_207403.1| hypothetical protein
[Helicobacter pylori 26695]
(160 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223273.1| putative [Helicobacter pylori J99] 322 2e-90
ref|NP_223088.1| putative [Helicobacter pylori J99] 58 1e-10
ref|NP_223089.1| putative [Helicobacter pylori J99] 48 1e-07
ref|NP_224078.1| putative Outer membrane protein [Helicobac... 40 2e-05
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 37 3e-04
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 35 0.001
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 35 0.001
ref|NP_223087.1| putative [Helicobacter pylori J99] 34 0.002
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 32 0.008
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 31 0.018
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 31 0.018
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 31 0.018
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 30 0.024
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 30 0.031
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 29 0.070
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 28 0.12
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 26 0.45
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 26 0.45
ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PRO... 26 0.59
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 25 0.78
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 25 0.78
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 25 0.78
ref|NP_222861.1| putative [Helicobacter pylori J99] 25 0.78
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 25 1.0
ref|NP_223820.1| putative Outer membrane function [Helicoba... 25 1.0
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 25 1.0
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 25 1.3
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 24 1.7
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 24 2.3
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 23 2.9
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 2.9
ref|NP_223344.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 23 2.9
ref|NP_223703.1| putative [Helicobacter pylori J99] 23 3.8
ref|NP_223234.1| putative [Helicobacter pylori J99] 23 3.8
ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori... 23 5.0
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 23 5.0
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 23 5.0
ref|NP_223120.1| putative [Helicobacter pylori J99] 22 6.6
ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [H... 22 8.6
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 22 8.6
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 22 8.6
ref|NP_222827.1| putative [Helicobacter pylori J99] 22 8.6
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 322 bits (826), Expect = 2e-90
Identities = 155/160 (96%), Positives = 158/160 (97%)
Query: 1 MVGLAPIKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT 60
MVGLAP+KITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT
Sbjct: 30 MVGLAPVKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT 89
Query: 61 SLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI 120
SLLSLN+DVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI
Sbjct: 90 SLLSLNMDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI 149
Query: 121 DRHHRIELGAKIPFSKTRNSFKNPYFLESVFIHATYSYMF 160
DRHHR+ELGAKIPFSKTRNSFKN YFLESVFIHA YSYMF
Sbjct: 150 DRHHRVELGAKIPFSKTRNSFKNSYFLESVFIHAAYSYMF 189
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 58.2 bits (139), Expect = 1e-10
Identities = 44/154 (28%), Positives = 76/154 (48%), Gaps = 11/154 (7%)
Query: 15 SDSSYTAFLWGAKGGYQFAF---FKALALRGEF--SYLMAIKPTALHTINTSLLSLNIDV 69
S+ + L+G + GYQ F AL GE+ + K +L + T+ SLNID+
Sbjct: 137 SNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTA--SLNIDL 194
Query: 70 LSD--FYTYKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHR 125
L D K+++ G++GG+G+G+ YQ+ S + + N+G+ T++ HR
Sbjct: 195 LMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIRGYSQPNAFGLVLNLGVSMTLNLKHR 254
Query: 126 IELGAKIPFSKTRNSFKNPYFLESVFIHATYSYM 159
EL K+P K + YF + + +Y+Y+
Sbjct: 255 FELALKMPPLKETSQTFLYYFKSTNIYYISYNYL 288
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 48.1 bits (113), Expect = 1e-07
Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 39/140 (27%)
Query: 55 LHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIG---YFYQSNHLGMKNSSFMGYNG- 110
L +NT LL D+ DF T KK+ GVY G GIG Y + N G +N GY+
Sbjct: 179 LGAMNTDLL---FDMPLDFKT-KKHFLGVYAGFGIGLMLYQDKPNQNG-RNLIVGGYSSP 233
Query: 111 ------------LFNVGLGSTIDRHHRIELGAKIPFSKTRNSFK---------------- 142
FNVG+ T+ R HR+E+G K+P S R +
Sbjct: 234 NFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYHNKENDERLLI 293
Query: 143 --NPYFLESVFIHATYSYMF 160
N F S F+ Y+++F
Sbjct: 294 SANNQFKRSSFLLVNYAFIF 313
>ref|NP_224078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 231
Score = 40.4 bits (93), Expect = 2e-05
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 27 KGGYQFAFFKALALRGEFSYLMAIKPTALHTINT------SLLSLNIDVLSDFY--TYKK 78
K G Q F K + +RG F++ + + ++L++ +DV+ +F +YK
Sbjct: 90 KTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSYKDPTNSFFTMLAVGLDVIMEFPLGSYKH 149
Query: 79 Y--SFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGL-FNVGLGSTIDRHHRIELGAKI-PF 134
Y +FG G + Y + N K+S G GL + G+ T+ HRIELG KI P
Sbjct: 150 YLGAFGGARGALVVYTDKQNFKFFKHSVVSG--GLAISGGVMLTLFLRHRIELGFKILPT 207
Query: 135 SKTRNSFKNPYFLESVFIHATYSYMF 160
++ +S + F S +A YSY F
Sbjct: 208 ARLLSS--SSRFETSPLFYAAYSYKF 231
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 37.0 bits (84), Expect = 3e-04
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 77 KKYSFGVYGGLGIG----YFYQSNHLGMKNSSFMG------YNGLFNVGLGSTIDRHHRI 126
+K SFG++GG+ + QS +L + NS++ + LFN GL HH I
Sbjct: 388 RKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRLQ-GIHHGI 446
Query: 127 ELGAKIPFSKT 137
ELG KIP T
Sbjct: 447 ELGVKIPTINT 457
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 34.7 bits (78), Expect = 0.001
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 26/132 (19%)
Query: 55 LHTINTSLLSLNIDVLSDFY--TYKKYSFGVYGGLGI-GYFYQSNHLGMKNSSFMGYNGL 111
L +N L L ID L +F K S G Y G + G + + LGM S N
Sbjct: 235 LGKMNNHLYGLGIDYLFNFIDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNY 294
Query: 112 F----------------NVGLGSTIDRHHRIELGAKIP-----FSKTRNSFKNP--YFLE 148
N G+ +DRH+ E+G KIP F +T N +F
Sbjct: 295 LTDYRAKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNASLFFKR 354
Query: 149 SVFIHATYSYMF 160
V + +Y Y F
Sbjct: 355 LVMFNVSYVYSF 366
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 34.7 bits (78), Expect = 0.001
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 26/132 (19%)
Query: 55 LHTINTSLLSLNIDVLSDFY--TYKKYSFGVYGGLGI-GYFYQSNHLGMKNSSFMGYNGL 111
L +N L L ID L +F K S G Y G + G + + LGM S N
Sbjct: 240 LGKMNNHLYGLGIDYLFNFIDNAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNY 299
Query: 112 F----------------NVGLGSTIDRHHRIELGAKIP-----FSKTRNSFKNP--YFLE 148
N G+ +DRH+ E+G KIP F +T N +F
Sbjct: 300 LTDYRAKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNASLFFKR 359
Query: 149 SVFIHATYSYMF 160
V + +Y Y F
Sbjct: 360 LVMFNVSYVYSF 371
>ref|NP_223087.1| putative [Helicobacter pylori J99]
Length = 240
Score = 34.3 bits (77), Expect = 0.002
Identities = 45/156 (28%), Positives = 66/156 (41%), Gaps = 26/156 (16%)
Query: 22 FLWGAKGGYQF---AFFKALA---LRGEFSYLM----AIKPTALHTINTSLLSLNIDVLS 71
F +G + GYQ +FF L + G Y+ A K ++ + LN D L
Sbjct: 94 FAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLL 153
Query: 72 DF---YTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHRIEL 128
DF + K G Y GLG+G G+ ++ G + FN GL T+ +RIE
Sbjct: 154 DFPLPFVGKYLYMGGYMGLGLGVVAH----GVNYTAEWGMS--FNAGLALTVLEKNRIEF 207
Query: 129 GAKI----PFSKTRNSFKNPYFLESVFIHATYSYMF 160
KI PF ++ NS K ++ Y Y+F
Sbjct: 208 EFKILNNFPFLQS-NSSKETWW--GAIASIGYQYVF 240
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 32.0 bits (71), Expect = 0.008
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 23/93 (24%)
Query: 67 IDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMG--------------YNGLF 112
+DV+ + S G +GG+ + N M SF G + LF
Sbjct: 135 MDVMVNVINNGIMSLGAFGGIQLA----GNSWLMATPSFEGILVEQALVSKKATSFQFLF 190
Query: 113 NVGLGSTIDRHHRIELGAKIPFSKTRNSFKNPY 145
NVG I +H IE G K P K KNPY
Sbjct: 191 NVGARLRILKHSSIEAGVKFPMLK-----KNPY 218
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 30.8 bits (68), Expect = 0.018
Identities = 25/90 (27%), Positives = 38/90 (41%), Gaps = 15/90 (16%)
Query: 59 NTSLLSLNIDVLSDFYTYKKYS------FGVYGGLGIG--YFYQSNH----LGMKNSSFM 106
N + +D + +F+ Y GV+GG+ I +Y N LG+ NSS +
Sbjct: 126 NMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQELLGITNSSAV 185
Query: 107 ---GYNGLFNVGLGSTIDRHHRIELGAKIP 133
+ LFN G + H E+G K P
Sbjct: 186 DNTSFQFLFNFGFKALFVDEHEFEIGFKFP 215
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 30.8 bits (68), Expect = 0.018
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 65 LNIDVLSDFYT-YKKYSFGVYGGLGIG--YFYQSNHLGMKNSS--------FMGYNGLFN 113
L ++ ++D T + K SFG +GG+ + + S ++ + N + + LFN
Sbjct: 571 LLVNFINDKATKHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQFLFN 630
Query: 114 VGLGSTIDR----------HHRIELGAKIPFSKT 137
+GL + R H IELG KIP T
Sbjct: 631 LGLRMNLARKKHRATDNAAQHGIELGTKIPTINT 664
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 30.8 bits (68), Expect = 0.018
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 25 GAKGGYQFAFFK----ALALRGEFSYLMAIKPTALHTINTSLLSLNI--DVLSDFYTYK- 77
G + GY+ F + L G F Y A ++ + + + + DVL +F K
Sbjct: 499 GVQVGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKT 558
Query: 78 ----KYSFGVYGGLGIGYFYQSNHLGMKNSSF----------MGYNGLFNVGLGSTIDRH 123
K SFGV+GG+ + N + ++F + LFN+GL + ++
Sbjct: 559 TKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKN 618
Query: 124 ----------HRIELGAKIPFSKT 137
H +ELG KIP T
Sbjct: 619 KKKASDHAAQHGVELGVKIPTINT 642
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 30.4 bits (67), Expect = 0.024
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 27/93 (29%)
Query: 68 DVLSDFYTYKKYSFGVYGGLGIG---------------------------YFYQSNHLGM 100
D+L+D SFG++GG+ IG + N
Sbjct: 144 DLLADIIDKDNASFGIFGGVAIGGNTWKSSAANYWKEQIIEAKGPDVCTPTYCNPNAPYS 203
Query: 101 KNSSFMGYNGLFNVGLGSTIDRHHRIELGAKIP 133
N+S + + N G+ + I +H+ +E G ++P
Sbjct: 204 TNTSTVAFQVWLNFGVRANIYKHNGVEFGVRVP 236
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 30.0 bits (66), Expect = 0.031
Identities = 18/44 (40%), Positives = 22/44 (49%), Gaps = 6/44 (13%)
Query: 111 LFNVGLGSTIDRHHRIELGAKIPFSKTRNSFKNPYFLESVFIHA 154
L NVG+ + I HH IE G KIP + N +F S I A
Sbjct: 310 LVNVGIRTNIFEHHGIEFGIKIP------TLPNYFFKGSTTIRA 347
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 28.9 bits (63), Expect = 0.070
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 69 VLSDFYTYKKYSFGVYGGLGIG-----YFYQSNHLGMKNSSFMGYNGLFNVGLGS 118
VLS + K G+ GLG+G +F ++ LG+++ F Y G +GL +
Sbjct: 1046 VLSQYAAAKSTQHGMSNGLGVGIGYKYFFGKARKLGLRHYFFFDY-GFSEIGLAN 1099
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 28.1 bits (61), Expect = 0.12
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 65 LNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGM--------KNSSFMG----YNGLF 112
+ ID L + + SFG + G I N G K++S+ + LF
Sbjct: 160 VGIDTLYNVINKEDASFGFFFGAQIAGNSWGNTTGAFLETKSPYKHTSYSLDPAIFQFLF 219
Query: 113 NVGLGSTIDRHHRIELGAKIP 133
N+G+ + I +H + G KIP
Sbjct: 220 NLGIRTHIGQHQEFDFGVKIP 240
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 26.2 bits (56), Expect = 0.45
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 11/46 (23%)
Query: 71 SDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGL 116
SD +TY G+G+ Y N + KN++F+G N +VGL
Sbjct: 562 SDVWTY---------GVGMDALY--NFINDKNTNFLGKNNKLSVGL 596
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 26.2 bits (56), Expect = 0.45
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 11/46 (23%)
Query: 71 SDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGL 116
SD +TY G+G+ Y N + KN++F+G N +VGL
Sbjct: 562 SDVWTY---------GVGMDALY--NFINDKNTNFLGKNNKLSVGL 596
>ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 841
Score = 25.8 bits (55), Expect = 0.59
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 74 YTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGL 111
Y ++K + G+ YFY + G+ NS+ GY G+
Sbjct: 714 YNWRKTTIGISS-----YFYSRAYSGISNSAAGGYYGM 746
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 25.4 bits (54), Expect = 0.78
Identities = 18/87 (20%), Positives = 37/87 (41%), Gaps = 11/87 (12%)
Query: 58 INTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNG------- 110
IN + +D L +F + FG G+ + + + + S++ ++
Sbjct: 127 INLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIGSYVKHHSNSSYSPA 186
Query: 111 ----LFNVGLGSTIDRHHRIELGAKIP 133
L+ G+ + I H+ +ELG K+P
Sbjct: 187 NFQFLWKFGVRTHIAIHNSLELGIKVP 213
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 25.4 bits (54), Expect = 0.78
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 25/106 (23%)
Query: 78 KYSFGVYGGLGIGYFYQSN----HLGMKNSSF------MGYNGLFNVGLGSTIDR----- 122
K S G++GG+ + N +L N+ + + LFN+G+ + R
Sbjct: 598 KLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKD 657
Query: 123 -----HHRIELGAKIPFSKTR-NSFKNPYF----LESVFIHATYSY 158
H IELG KIP T SF L SV+++ ++Y
Sbjct: 658 SDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 703
Score = 21.9 bits (45), Expect = 8.6
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 71 SDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGL 116
SD +TY G G Y N + K ++F+G N +VGL
Sbjct: 569 SDVWTY---------GFGADALY--NFINDKATNFLGKNNKLSVGL 603
Score = 21.9 bits (45), Expect = 8.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 76 YKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGS 118
YK++ FG G Y F+ NH +K+S F + ++ G G+
Sbjct: 535 YKQF-FGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGA 578
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 25.4 bits (54), Expect = 0.78
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 25/106 (23%)
Query: 78 KYSFGVYGGLGIGYFYQSN----HLGMKNSSF------MGYNGLFNVGLGSTIDR----- 122
K S G++GG+ + N +L N+ + + LFN+G+ + R
Sbjct: 639 KLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKD 698
Query: 123 -----HHRIELGAKIPFSKTR-NSFKNPYF----LESVFIHATYSY 158
H IELG KIP T SF L SV+++ ++Y
Sbjct: 699 SDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 744
Score = 21.9 bits (45), Expect = 8.6
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 71 SDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGL 116
SD +TY G G Y N + K ++F+G N +VGL
Sbjct: 610 SDVWTY---------GFGADALY--NFINDKATNFLGKNNKLSVGL 644
Score = 21.9 bits (45), Expect = 8.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 76 YKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGS 118
YK++ FG G Y F+ NH +K+S F + ++ G G+
Sbjct: 576 YKQF-FGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGA 619
>ref|NP_222861.1| putative [Helicobacter pylori J99]
Length = 287
Score = 25.4 bits (54), Expect = 0.78
Identities = 13/42 (30%), Positives = 19/42 (44%)
Query: 50 IKPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIGY 91
IK H I + +LN + L + Y SFG+Y + Y
Sbjct: 28 IKNKIFHNIALDIETLNQEALKNTYDVSAISFGLYPKIANDY 69
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 25.0 bits (53), Expect = 1.0
Identities = 13/44 (29%), Positives = 20/44 (44%)
Query: 64 SLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMG 107
+L+ D+L D Y Y F G G FY + + + S +G
Sbjct: 132 ALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSEVSLLLSLLLG 175
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 25.0 bits (53), Expect = 1.0
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 88 GIGYFYQSNHLGMKNSSFMGYNGLFNVGL 116
G+G N + KN++F+G N +VGL
Sbjct: 515 GVGSDLLFNFINDKNTNFLGKNNKISVGL 543
Score = 24.6 bits (52), Expect = 1.3
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Query: 76 YKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGSTI 120
YK++ FG G+ Y F+ NH +K+S F + + G+GS +
Sbjct: 475 YKQF-FGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVLTYGVGSDL 520
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 25.0 bits (53), Expect = 1.0
Identities = 26/109 (23%), Positives = 42/109 (37%), Gaps = 24/109 (22%)
Query: 58 INTSLLSLNIDVLSDFYTYKK--YSFGVYGGLGIG---YFYQ------------SNHLGM 100
+N + D L +FY K+ + G++ G G+G + Q +N G
Sbjct: 128 VNNFTYGVGFDALYNFYESKEGYNTAGLFVGFGLGGDSFIVQGESYLKSQMQICNNTAGC 187
Query: 101 KNSSFMGYNGL-FNVGLGSTIDRHHRIELGAKIPFSKTRNSFKNPYFLE 148
S Y + G S +H IE+G K+P F N ++ E
Sbjct: 188 SASMNTSYFQMPVEFGFRSNFSKHSGIEVGFKLPL------FTNQFYKE 230
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 24.6 bits (52), Expect = 1.3
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 35 FKALALRGEFSYLMAIKPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQ 94
F+A G + K T L +N S Y Y YS G + +
Sbjct: 1101 FEAQGALGSDQSSLNFKSTLLQDLNQS------------YNYLAYSATARASYGYDFAFF 1148
Query: 95 SNHLGMKNSSFMGYNGLFNVGLGSTIDRHHRIELGAKIPFSKTRNSFKNPYFLESVFIHA 154
N L +K S + YN L + S ++ GA +++ F +E+ + +
Sbjct: 1149 RNALVLKPSVGVSYNHLGSTNFKSNSQSQVALKNGA-----SSQHLFNANANVEARYYYG 1203
Query: 155 TYSYMF 160
SY +
Sbjct: 1204 DTSYFY 1209
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 24.3 bits (51), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 87 LGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTID 121
LG+G F + N +S F G ++ GL TI+
Sbjct: 243 LGLGSFIEKNICSGASSCFSGNQLIYKKGLDRTIN 277
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 23.9 bits (50), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 34 FFKALALRGEFSYLMAIKPTALHTIN 59
FF AL G S + I+P AL+ IN
Sbjct: 304 FFMALVFAGITSTVSLIEPLALYLIN 329
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 23.5 bits (49), Expect = 2.9
Identities = 24/90 (26%), Positives = 36/90 (39%), Gaps = 4/90 (4%)
Query: 74 YTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHRIELGAKIP 133
YT+ + G L IGY Y +N+ M Y F+ G+ + + I + KIP
Sbjct: 165 YTFLASLCMLLGILYIGYDYANNYGMMSFDILDWYQLNFSSGIKTWLFVAFLIGIAVKIP 224
Query: 134 FSKTRN----SFKNPYFLESVFIHATYSYM 159
++ N L SV + A S M
Sbjct: 225 LFPLHTWLPYAYSNAPTLGSVMLSALLSKM 254
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 23.5 bits (49), Expect = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 47 LMAIKPTALHTINTSLLSLNIDVLSDFYTYKKY 79
L I P++++ I TS N + SD+ YK Y
Sbjct: 155 LNKIAPSSVNLIFTSPPYYNARIYSDYKNYKDY 187
>ref|NP_223344.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 767
Score = 23.5 bits (49), Expect = 2.9
Identities = 15/54 (27%), Positives = 22/54 (39%), Gaps = 5/54 (9%)
Query: 51 KPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSS 104
KP + +S N + YTYK +FG+ YFY + M N +
Sbjct: 628 KPFDIKGKRLPYVSPNQFIFDMMYTYKHTTFGI-----SSYFYSRAYSSMLNQA 676
>ref|NP_223703.1| putative [Helicobacter pylori J99]
Length = 222
Score = 23.1 bits (48), Expect = 3.8
Identities = 8/22 (36%), Positives = 17/22 (76%)
Query: 47 LMAIKPTALHTINTSLLSLNID 68
L+++KP LH++++ L+L I+
Sbjct: 89 LLSLKPALLHSLDSLKLALKIE 110
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 23.1 bits (48), Expect = 3.8
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 37 ALALRGEFSYLMAIKPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGG------LGIG 90
AL+L+ ++L +KP +NTS L +D F ++KK + G L
Sbjct: 165 ALSLK---THLEELKPAKTFPLNTSEAFLELDKELRFLSHKKMIYVANVGEEDLNILNEH 221
Query: 91 YFYQSNHLGMKNSSFM 106
NH ++NS F+
Sbjct: 222 AKKVENHAKVQNSEFV 237
>ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 492
Score = 22.7 bits (47), Expect = 5.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 63 LSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHL 98
L+L+ + ++F T + YS ++ G + SNHL
Sbjct: 98 LALSKERFNEFQTAEFYSLYLFIVAGFQFMVSSNHL 133
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 22.7 bits (47), Expect = 5.0
Identities = 16/62 (25%), Positives = 29/62 (45%), Gaps = 16/62 (25%)
Query: 68 DVLSDFYT---YKK------------YSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLF 112
++L+ FYT YK+ Y F Y G +G+ N++G+ +G + L+
Sbjct: 350 NILNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYG-VGTDVLY 408
Query: 113 NV 114
N+
Sbjct: 409 NI 410
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 22.7 bits (47), Expect = 5.0
Identities = 8/15 (53%), Positives = 9/15 (59%)
Query: 19 YTAFLWGAKGGYQFA 33
Y FLWG G Y +A
Sbjct: 373 YRGFLWGILGRYTYA 387
>ref|NP_223120.1| putative [Helicobacter pylori J99]
Length = 416
Score = 22.3 bits (46), Expect = 6.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 74 YTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFM 106
+TY+ SF + GG Y ++ + +SSF+
Sbjct: 377 WTYRDLSFDMGGGYVYAYNSKATRKSLGDSSFV 409
>ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 273
Score = 21.9 bits (45), Expect = 8.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 38 LALRGEFSYLMAIKPTALHTINTS 61
+ +RG+FS L+ I+ T L+ + S
Sbjct: 77 MEIRGDFSMLLKIERTLLNLLQHS 100
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 21.9 bits (45), Expect = 8.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 144 PYFLESVFIHA 154
PYFL VF+HA
Sbjct: 6 PYFLAIVFLHA 16
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 21.9 bits (45), Expect = 8.6
Identities = 12/39 (30%), Positives = 17/39 (42%)
Query: 50 IKPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLG 88
I PT + T L ++ +L K FGV G +G
Sbjct: 36 IYPTGSYVTTTGALQVDSSLLPKGIENHKLGFGVGGEIG 74
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 21.9 bits (45), Expect = 8.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 51 KPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQ 94
K T S L ++++ + + Y + Y GLG G FY+
Sbjct: 47 KETNTPLFEKSPLDSSLELYKNSEIHMLYPYLYYFGLGNGVFYR 90
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,037
Number of Sequences: 1491
Number of extensions: 8880
Number of successful extensions: 68
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 50
length of query: 160
length of database: 494,079
effective HSP length: 71
effective length of query: 89
effective length of database: 388,218
effective search space: 34551402
effective search space used: 34551402
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)