BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645236|ref|NP_207406.1| hypothetical protein
[Helicobacter pylori 26695]
(166 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223019.1| putative [Helicobacter pylori J99] 313 1e-87
ref|NP_224097.1| putative [Helicobacter pylori J99] 30 0.044
ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori... 29 0.075
ref|NP_224030.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_223090.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 0.63
ref|NP_222934.1| putative [Helicobacter pylori J99] 26 0.63
ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 25 1.4
ref|NP_223055.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_222755.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 5.4
ref|NP_222860.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_222853.1| Cytochrome oxidase (CBB3-TYPE) [Helicobact... 23 5.4
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 22 7.0
ref|NP_223157.1| putative Outer membrane protein [Helicobac... 22 7.0
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 22 7.0
ref|NP_223639.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223632.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicoba... 22 9.2
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 313 bits (803), Expect = 1e-87
Identities = 162/166 (97%), Positives = 165/166 (98%)
Query: 1 MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSAL 60
MLSPATFKQITLALIASRLIVVILYAFIFIVLSFY LNIITILNFKALILGF+S+FSSAL
Sbjct: 86 MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYALNIITILNFKALILGFISIFSSAL 145
Query: 61 FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLN 120
FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLP+IGQLFIKTSIFYYLN
Sbjct: 146 FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPNIGQLFIKTSIFYYLN 205
Query: 121 QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR 166
QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR
Sbjct: 206 QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR 251
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 29.6 bits (65), Expect = 0.044
Identities = 30/118 (25%), Positives = 50/118 (41%), Gaps = 4/118 (3%)
Query: 8 KQITLALIASRLIVVILYAFIFIVLSFY--MLNIITILNFKALILGFVSVFSSALFCFCL 65
KQI L L A ++V + AF VL ++ + + I + ++ F++ L L
Sbjct: 216 KQIALRLCAR--LLVFMGAFSVFVLWYFGALFSFYGIERHGSALMVFLNSLIFMLAALSL 273
Query: 66 AIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLNQLL 123
F+ +NE I +L + P E LPS Q+F++ Y+ LL
Sbjct: 274 GSFLGAWIKNEAHTTQIVLISSLPLIFMMGFVWPFESLPSYLQVFVQIVPAYHGISLL 331
>ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 492
Score = 28.9 bits (63), Expect = 0.075
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 11 TLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSALFCFCLAIFVA 70
TL+LI+ ++++ + IF+ LS N F +L L V+ F + L + +
Sbjct: 79 TLSLISQSIVLISAFFLIFLALSKERFNEFQTAEFYSLYLFIVAGFQFMVSSNHLLLILI 138
Query: 71 RIFQNEQSILGFCNIINL----YALMSCNVFVPLEYLPSIGQLFIKTSIFYYL-----NQ 121
+ E + L C ++ L Y L + + + + S F ++ +YL N
Sbjct: 139 GL---ETASLPLCVLMALSDKRYGLEAGIKYFTMGAMASA--FFAMGAMAFYLLTGSLNL 193
Query: 122 LLIKAF---QGIDTILVLATSTFFIIGGI 147
+I + +GI ++ A T F+IG I
Sbjct: 194 EVITLYLHTEGITNPMLFAMGTIFLIGAI 222
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 28.1 bits (61), Expect = 0.13
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 32/129 (24%)
Query: 5 ATFKQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVS---------- 54
AT T+A I S ++ YA I I L L I I+ F+AL+ G ++
Sbjct: 104 ATNSSETMAFIKSYKNYLLYYALILIAL----LIAIKIIRFRALVPGVIASVLGLSILTI 159
Query: 55 --------------VFSSALFCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPL 100
+ +LF LA + S+ I Y+ ++ N+++P
Sbjct: 160 GSVRNIKHLTKNDAILKRSLFSLSLA---RGFYSAYLSLFDRQQAIKFYSFLN-NLYLPS 215
Query: 101 EYLPSIGQL 109
+YL S G +
Sbjct: 216 DYLSSTGDI 224
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 28.1 bits (61), Expect = 0.13
Identities = 26/83 (31%), Positives = 35/83 (41%), Gaps = 2/83 (2%)
Query: 45 FKALILGFVSVFSSALFCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLP 104
FK L LG V + S V R+F+ E G ++IN Y L C L+
Sbjct: 330 FKFLHLG-VDLMPSKDLSLAFDPSVKRVFKGELDFYGN-SLINCYGLGLCVFLAHLKDDE 387
Query: 105 SIGQLFIKTSIFYYLNQLLIKAF 127
S+G +K I +L LL F
Sbjct: 388 SVGSSGLKLGIGLHLGMLLQGVF 410
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 25.8 bits (55), Expect = 0.63
Identities = 20/79 (25%), Positives = 38/79 (47%), Gaps = 8/79 (10%)
Query: 8 KQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSALFCFCLAI 67
K TLA +A+R + ++ Y + IIT+ N++ L +S +++ + A+
Sbjct: 265 KTTTLAKLAAR--------YSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV 316
Query: 68 FVARIFQNEQSILGFCNII 86
A+ F E L +C+ I
Sbjct: 317 IDAKDFAKEIEALEYCDFI 335
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 25.8 bits (55), Expect = 0.63
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 5 ATFKQITLALIASRLIV---VILYAFIFIVLSFYMLNIITILNFKAL----ILGFVSVFS 57
A F + L L+ + +V ++ + +++SF N +I+N K + L + V +
Sbjct: 297 AGFSLMVLILVFNEYVVKIPIVAVVAVMVIISFTTFNFQSIMNIKTIKLYDTLNMLLVVA 356
Query: 58 SALFCFCLAIFV 69
L+ LAI V
Sbjct: 357 VVLYTHNLAIGV 368
>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 388
Score = 24.6 bits (52), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Query: 21 VVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSALFCFCLAI 67
VV+L F ++ +F + I + K L + F+S S+L C+AI
Sbjct: 333 VVLLIGFSLVINAFGVGGIFPV---KGLAVPFLSYGGSSLLANCIAI 376
Score = 21.9 bits (45), Expect = 9.2
Identities = 21/85 (24%), Positives = 34/85 (39%), Gaps = 10/85 (11%)
Query: 6 TFKQITLALIASRLIVVILYAFIFIVLSF---YMLNIITILNFKALILGFVSVFSSA--- 59
TF A + LI + Y+F+F+ L+ + N + + +L + VFS
Sbjct: 132 TFVAKEKANVKEELITFVPYSFVFVALAIGVGVLQNDLGQIVLLGAVLAVLLVFSGGSVH 191
Query: 60 ----LFCFCLAIFVARIFQNEQSIL 80
+ AI V I +E IL
Sbjct: 192 LFGLIVSGAFAISVLAIVTSEHRIL 216
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 24.3 bits (51), Expect = 1.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 105 SIGQLFIKTSIFYYLNQLLI----KAFQGIDTILVLATSTFFIIGGIILF 150
S+G F + FY NQ I + IDTI +A FI+ G++LF
Sbjct: 39 SMGSFFEQA--FYIPNQKKIPKSARQILMIDTIKAIAKEKKFILEGLLLF 86
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 23.5 bits (49), Expect = 3.1
Identities = 18/82 (21%), Positives = 34/82 (40%), Gaps = 2/82 (2%)
Query: 15 IASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSALFCFCLAIFVARIFQ 74
I L + +L+A I +V + ++ L L GF + S + F ++
Sbjct: 151 ILQALFLSVLFAIIILV--YLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYK 208
Query: 75 NEQSILGFCNIINLYALMSCNV 96
++GF N+ ALM ++
Sbjct: 209 PFLLLVGFLNVSVTKALMDASM 230
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 22.7 bits (47), Expect = 5.4
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 15 IASRLIVVILYAFIFIVLSFYMLNIITILNFKALI-------LGFVSVFS 57
IAS++++ + + F++ VL++ + + + KA LG ++FS
Sbjct: 5 IASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFS 54
>ref|NP_222860.1| putative [Helicobacter pylori J99]
Length = 255
Score = 22.7 bits (47), Expect = 5.4
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 132 TILVLATSTFFIIGGIILFLLS 153
T+L L+ + FFI+G +L +S
Sbjct: 43 TMLTLSYTLFFILGAFLLVAIS 64
>ref|NP_222853.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 488
Score = 22.7 bits (47), Expect = 5.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 110 FIKTSIFYYLNQLLIKAFQGIDTILVLATSTFFIIG-------GIILFLLSANRMLLTPK 162
F+ + +Y+ L + Q I ++ LA T +IIG G + F L A+ +TP+
Sbjct: 321 FLVLASTFYMLSTLEGSIQAIKSVNALAHFTDWIIGHVHDGVLGWVGFTLIASMYHMTPR 380
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 22.3 bits (46), Expect = 7.0
Identities = 10/21 (47%), Positives = 16/21 (75%)
Query: 33 SFYMLNIITILNFKALILGFV 53
SF++L IL+F A++LG+V
Sbjct: 87 SFFILGGPLILSFYAVVLGWV 107
>ref|NP_223157.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 465
Score = 22.3 bits (46), Expect = 7.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 24 LYAFIFIVLSFYMLNIITILNFKALILGFVSVFS 57
LYA F++ S L+ + F I+G VS ++
Sbjct: 8 LYALFFLLFSGLFLSKLQAYKFNMSIVGKVSSYT 41
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 22.3 bits (46), Expect = 7.0
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 13 ALIASRLIVVILYAFIFIVLSF--YML------NIITILNFKALILGFVSVFSSALFCFC 64
A I +R+ ++Y I+L F Y++ N+ + +FK +L +F F
Sbjct: 152 ATIVTRICNALVYPLCLILLLFSLYLIPYWQGANLFVVPSFKEFVLAIWLTLPVLVFSFN 211
Query: 65 LAIFVARIFQN 75
+ ++ QN
Sbjct: 212 HSPIISTFTQN 222
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 21.9 bits (45), Expect = 9.2
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 55 VFSSALFCFCLAIFVARI 72
+FSSA+F F LA+ A I
Sbjct: 102 IFSSAVFFFALALIEAII 119
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 21.9 bits (45), Expect = 9.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 44 NFKALILGFVSVFSSALFCFC 64
N K +L FS A C+C
Sbjct: 233 NLKKTLLVLARAFSQAAICYC 253
>ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
Length = 493
Score = 21.9 bits (45), Expect = 9.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 24 LYAFIFIVLSFYMLNIITILNFKALILGFVSVF 56
++ F+F++L + + LN +L LG++ +F
Sbjct: 104 IFLFLFLILHEILNTELAPLNGISLALGYLCLF 136
Score = 21.9 bits (45), Expect = 9.2
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 29 FIVLSFYMLNIITILNFKALILGFVSVFSSALFCFCLAIFVARIFQNEQSILGFCNIINL 88
F + F L + ILN + L +S+ L F L + + IF+ S
Sbjct: 102 FFIFLFLFLILHEILNTELAPLNGISLALGYLCLFILVLSASLIFEKVLS--------KQ 153
Query: 89 YALMSCNVFVPLEYLP--SIGQLFIKTSIFYYLNQLLIKAF------QGIDTILVLA 137
Y + + L+ L +I F KTS +L+Q+L F + ++T+L +A
Sbjct: 154 YLQTAKDKIASLKNLKVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIA 210
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.339 0.151 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,005
Number of Sequences: 1491
Number of extensions: 6531
Number of successful extensions: 54
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 24
length of query: 166
length of database: 494,079
effective HSP length: 71
effective length of query: 95
effective length of database: 388,218
effective search space: 36880710
effective search space used: 36880710
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 45 (21.9 bits)