BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645237|ref|NP_207407.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223019.1| putative [Helicobacter pylori J99] 146 9e-38
ref|NP_223426.1| putative [Helicobacter pylori J99] 26 0.17
ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylo... 25 0.38
ref|NP_223442.1| putative [Helicobacter pylori J99] 23 0.84
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 23 1.4
ref|NP_223641.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223495.1| putative Outer membrane protein [Helicobac... 22 2.5
ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 2.5
ref|NP_223417.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 22 3.2
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 21 4.2
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 21 5.5
ref|NP_223252.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_222881.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223192.1| cag island protein, DNA transfer protein [... 20 7.1
ref|NP_222963.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_224101.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 20 9.3
ref|NP_223683.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_222957.1| ABC transporter, permease [Helicobacter py... 20 9.3
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 146 bits (368), Expect = 9e-38
Identities = 76/77 (98%), Positives = 76/77 (98%)
Query: 1 MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL 60
MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL
Sbjct: 1 MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL 60
Query: 61 IISSAIFGLTQAITSLR 77
IISSAIFGLTQAITS R
Sbjct: 61 IISSAIFGLTQAITSSR 77
>ref|NP_223426.1| putative [Helicobacter pylori J99]
Length = 245
Score = 25.8 bits (55), Expect = 0.17
Identities = 15/67 (22%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 15 YLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIF-YFNNIIGLMGL--LIISSAIFGLTQ 71
+L+ + + ++ L LL+L+ ++ K ++ Y N +I ++GL +++ S++F T+
Sbjct: 153 FLSVSDCVDFSLFILALFLLILVLIYHKRLFGLYEYANTLILIVGLCVVVLCSSMFIQTK 212
Query: 72 AITSLRI 78
+R+
Sbjct: 213 EYYGMRL 219
>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
Length = 402
Score = 24.6 bits (52), Expect = 0.38
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 7 ILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLLIISSAI 66
+LK EI S+ + F +P+ LLL++ +K ++++ NI+ L+ LII+ A+
Sbjct: 178 LLKKEIDSF-------YQAFNHPLRPLLLIVGG-AKVSSKLTLLKNILDLIDKLIIAGAM 229
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 23.5 bits (49), Expect = 0.84
Identities = 12/32 (37%), Positives = 18/32 (55%), Gaps = 4/32 (12%)
Query: 34 LLLIFVFSKNTTEI----FYFNNIIGLMGLLI 61
+ L+F + EI FY NIIGL G+++
Sbjct: 306 IALLFSMGSSQKEIQKTFFYLGNIIGLGGVIL 337
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 22.7 bits (47), Expect = 1.4
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 3 AILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLLII 62
++ S +KL + LFW F Y + + L V K +++
Sbjct: 670 SVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLYKAN---------------IML 714
Query: 63 SSAIFGLTQAITSLRI 78
S AI GL +++S+ +
Sbjct: 715 SPAIAGLAMSLSSVSV 730
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 21.9 bits (45), Expect = 2.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 6 SILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNN 52
S LK S + S+LF + L+ LIF FSK + E+ +N
Sbjct: 209 SFLKAFSSSLFSLLSSLFCHPLSLFCSLIGLIFCFSKFSRELVNASN 255
>ref|NP_223495.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 587
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/35 (31%), Positives = 19/35 (53%), Gaps = 2/35 (5%)
Query: 41 SKNTTEIFY--FNNIIGLMGLLIISSAIFGLTQAI 73
S + + FY I+G GL+ S+ ++G TQ +
Sbjct: 314 SDQSCQEFYNGLKKIMGYSGLIKASANLYGTTQVV 348
>ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 351
Score = 21.9 bits (45), Expect = 2.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 46 EIFYFNNIIGLMGL 59
+IF F N++GLM +
Sbjct: 107 KIFVFENVVGLMSM 120
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 21.6 bits (44), Expect = 3.2
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 4 ILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLLIIS 63
ILS L +K Y + L TF + +L+LL +S + + F + LM L
Sbjct: 78 ILSALDNSLKDYAPTFNVLKKTFKDRLRVLILLNQPYSSDAIKGFIAPSQTDLMILNPKD 137
Query: 64 SAIF 67
+A+F
Sbjct: 138 TALF 141
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 3 AILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVF 40
A++S++ L + T + + +YP+ ++LLL ++
Sbjct: 139 ALVSLMMLVMVFNATIVTRICNALVYPLCLILLLFSLY 176
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 21.2 bits (43), Expect = 4.2
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 31 LMLLLLIFVFSKNTTEIFYFNN-----------IIGLMGLLIISSAIFG 68
L L+ + +K T I + N ++GLMG+ + A+FG
Sbjct: 620 LSSLVKVLAIAKKTKSIIWQNILFALGIKAVFIVLGLMGVASLWEAVFG 668
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 20.8 bits (42), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 12 IKSYLTNTSALFWTFIYPIL--MLLLLIFV 39
IK+Y N+ AL+ ++ M + LIFV
Sbjct: 190 IKAYQPNSKALYLLYLSSFFEKMFMTLIFV 219
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 20.8 bits (42), Expect = 5.5
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 9 KLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNN 52
+LE+ + N W Y + + I + KN IF+ N
Sbjct: 80 RLEVSDLIKNIRYGIWAVSYFEKLKVKEIILDDKNKANIFFDGN 123
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 20.8 bits (42), Expect = 5.5
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 33 LLLLIFVFSKNTTEIFYFNNIIGLMGLLIISSAIFG 68
++L + +F K+ + ++ +G +++S A FG
Sbjct: 1 MVLFLSIFKKSFNDFLSARMLLINLGPILLSLAFFG 36
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 20.4 bits (41), Expect = 7.1
Identities = 7/18 (38%), Positives = 12/18 (65%)
Query: 36 LIFVFSKNTTEIFYFNNI 53
++F KN T++F+ NI
Sbjct: 210 IVFKHHKNYTQLFFGGNI 227
>ref|NP_222963.1| putative [Helicobacter pylori J99]
Length = 351
Score = 20.4 bits (41), Expect = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 26 FIYPILMLLLLIFV 39
FI +LML LIFV
Sbjct: 3 FIVAVLMLAFLIFV 16
>ref|NP_224101.1| putative [Helicobacter pylori J99]
Length = 441
Score = 20.0 bits (40), Expect = 9.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 22 LFWTFIYPILMLLLLIFVF 40
+FW YP++ L +I F
Sbjct: 150 VFWVVFYPVVRLFDVIAHF 168
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 26 FIYPILMLLLLIF 38
+ Y ILM LL+IF
Sbjct: 298 YAYNILMFLLIIF 310
>ref|NP_223683.1| putative [Helicobacter pylori J99]
Length = 335
Score = 20.0 bits (40), Expect = 9.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 42 KNTTEIFYFNNII 54
+NT I YFN+I+
Sbjct: 17 QNTPSISYFNSIV 29
>ref|NP_222957.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 338
Score = 20.0 bits (40), Expect = 9.3
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 24 WTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGL 59
W+ I + +L+++ F+ N I + + MGL
Sbjct: 180 WSAIPMLFLLIVISSAFNSNFWIILFLVLLFSWMGL 215
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.334 0.147 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,810
Number of Sequences: 1491
Number of extensions: 2431
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 20
length of query: 79
length of database: 494,079
effective HSP length: 55
effective length of query: 24
effective length of database: 412,074
effective search space: 9889776
effective search space used: 9889776
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 40 (20.0 bits)