BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645239|ref|NP_207409.1| hypothetical protein
[Helicobacter pylori 26695]
(111 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223275.1| putative [Helicobacter pylori J99] 201 5e-54
ref|NP_223651.1| putative [Helicobacter pylori J99] 29 0.028
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 28 0.062
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 27 0.11
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 0.14
ref|NP_223279.1| ADENYLATE KINASE [Helicobacter pylori J99] 24 0.89
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 24 1.2
ref|NP_223988.1| putative [Helicobacter pylori J99] 23 2.0
ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobac... 23 2.0
ref|NP_223049.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 22 3.4
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 22 3.4
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 22 5.8
ref|NP_223465.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [He... 21 7.5
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 21 7.5
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 7.5
ref|NP_223304.1| putative Oxidoreductase [Helicobacter pylo... 21 7.5
ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERA... 21 7.5
ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicob... 21 9.8
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 21 9.8
ref|NP_223089.1| putative [Helicobacter pylori J99] 21 9.8
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 21 9.8
>ref|NP_223275.1| putative [Helicobacter pylori J99]
Length = 110
Score = 201 bits (510), Expect = 5e-54
Identities = 101/110 (91%), Positives = 107/110 (96%)
Query: 2 MEHHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYEE 61
MEHHK HTTIQALQAKRK+LLTELAELEAEIKVSSER+SSFN+SLSPSLLAEIEEIEYEE
Sbjct: 1 MEHHKAHTTIQALQAKRKRLLTELAELEAEIKVSSERRSSFNVSLSPSLLAEIEEIEYEE 60
Query: 62 KTSKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALEFYMLKHP 111
K SKERRI+H++LLSPSFMAKVDEYMKEKGF NRSLLFEKALEFYMLKHP
Sbjct: 61 KMSKERRIHHNLLLSPSFMAKVDEYMKEKGFPNRSLLFEKALEFYMLKHP 110
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 29.3 bits (64), Expect = 0.028
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 34 VSSERKSSFNISLSPSLLAEIEEIEYEEKTSKERR 68
+ ++K SFNI+ SP ++ E+ E E + KE R
Sbjct: 47 LDEDKKKSFNIAFSPCVIKELNEFLLEFGSFKETR 81
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 28.1 bits (61), Expect = 0.062
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 4 HHKVHTTIQALQAKRKKLLTELA----ELEAEIKVSSERKSSFNISLSPSLLAEIEEIEY 59
H + T++ A LL E+ E+E +I + S R S N ++ + + E+ EY
Sbjct: 289 HQDKNYTLEEFSADVVFLLREIVKNKQEIEPDIFIESGRYISANHAVLVAPVLELFSHEY 348
Query: 60 EEKTSKERRINHSVLLSP--SFMAKVDE 85
EK+ K + N+ L+ +A ++E
Sbjct: 349 NEKSLKIKENNNPPLIDEMLDLLANINE 376
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 27.3 bits (59), Expect = 0.11
Identities = 15/61 (24%), Positives = 29/61 (46%)
Query: 11 IQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYEEKTSKERRIN 70
++A K++ E++ L+ E++ + F + AEIE + EK KE+ +
Sbjct: 455 LEAQFENEKEVFKEISRLKMEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQ 514
Query: 71 H 71
H
Sbjct: 515 H 515
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 26.9 bits (58), Expect = 0.14
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 4 HHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYEEKT 63
HH V T + Q RKK LT E + V E + I E Y+E+
Sbjct: 21 HHGVDTLVFKTQEIRKKTLTSSGLYEIVVAVEEEENKKAPL---------IPESLYDEEL 71
Query: 64 SKERRINH--SVLLSPSFMAKVDEYMKEKGFSNRSLLFEK 101
++E + S + +A V + FS L EK
Sbjct: 72 NEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEK 111
>ref|NP_223279.1| ADENYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 24.3 bits (51), Expect = 0.89
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 14/65 (21%)
Query: 50 LLAEIEEIEYEEKTSKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKAL----EF 105
+L + E+E E T+KER + S D+ E+ F NR +F L F
Sbjct: 110 ILKSVIEVEVSENTAKERVLGRS--------RGADD--NERVFHNRMRVFLDPLVEIQNF 159
Query: 106 YMLKH 110
Y KH
Sbjct: 160 YKAKH 164
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 23.9 bits (50), Expect = 1.2
Identities = 23/77 (29%), Positives = 33/77 (41%), Gaps = 8/77 (10%)
Query: 1 MMEHHKVHTTIQALQAKRKKLLTE-LAELEAEIKVSSERKSSFNISLSPSLLAEIE---- 55
++ H++ H + Q E L EL+ I +K + +I LA IE
Sbjct: 302 IINHYQSHLPLMPEQILLSACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIAMK 361
Query: 56 ---EIEYEEKTSKERRI 69
EI +EKTS E RI
Sbjct: 362 NAQEIFSQEKTSNEDRI 378
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.1 bits (48), Expect = 2.0
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 35 SSERKSSFNISLSPS-LLAEIEEIEYEEKTSKERRINHSVLLSPSFMAKVDEYMKEKGFS 93
+S+ K NI+ +P L + + K + +H + +F +++Y+KE FS
Sbjct: 17 TSKAKLLENIAENPERYLGIFRPTKPKTKLLQNLLTSHEIKFGDAFECLIEQYLKEHSFS 76
>ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobacter pylori J99]
Length = 233
Score = 23.1 bits (48), Expect = 2.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 60 EEKTSKERRINHSVLLSPSFMAKVDEYMKEK 90
+ KT++ R +NH + +P F + Y K
Sbjct: 112 DSKTNRVRFLNHDLSATPDFELSLRAYQTAK 142
>ref|NP_223049.1| putative [Helicobacter pylori J99]
Length = 252
Score = 22.7 bits (47), Expect = 2.6
Identities = 10/26 (38%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Query: 80 MAKVD-EYMKEKGFSNRSLLFEKALE 104
+AK D +++KE GFS ++ FE ++
Sbjct: 17 LAKFDNDFIKEFGFSTKNAFFEYCVQ 42
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 22.3 bits (46), Expect = 3.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 36 SERKSSFNISLSPSLLAEIEEIEYEEKTSKERR 68
++R SF S S + +EEI+ + K SKE +
Sbjct: 48 AKRLRSFLHSKSLEISKRLEEIQAQLKVSKEHK 80
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter
pylori J99]
Length = 815
Score = 22.3 bits (46), Expect = 3.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 41 SFNISLSPSLLAEIEEIEYEEKTS-----KERRINHSVLLSPSFMAKVDEYMKEKGFSNR 95
S +SL + E +E E EEK + KE+ H++ + AK+ Y + S++
Sbjct: 13 SIFLSLLGTFELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSK 72
Query: 96 SL 97
L
Sbjct: 73 EL 74
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 21.6 bits (44), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 83 VDEYMKEKGFSNRSLLFEKALE 104
+ +Y+ +K S+ S+ EKALE
Sbjct: 380 IAQYLTQKYISSLSMPLEKALE 401
>ref|NP_223465.1| putative [Helicobacter pylori J99]
Length = 108
Score = 21.6 bits (44), Expect = 5.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 93 SNRSLLFEKALEFYM 107
S +SLL +++LEFY+
Sbjct: 6 SCKSLLIQRSLEFYL 20
>ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 21.2 bits (43), Expect = 7.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 76 SPSFMAKVDEYMKE 89
SP F K++ Y+KE
Sbjct: 42 SPQFYEKIEPYLKE 55
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 21.2 bits (43), Expect = 7.5
Identities = 10/36 (27%), Positives = 18/36 (49%)
Query: 59 YEEKTSKERRINHSVLLSPSFMAKVDEYMKEKGFSN 94
++ KT KE + S + ++D Y+ +KG N
Sbjct: 139 HDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQN 174
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.2 bits (43), Expect = 7.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 15 QAKRKKLLTELAELEAEIKVSSERKSSFN 43
+A L+ E +L AEIK + +FN
Sbjct: 2023 EATGNPLIIEEVKLRAEIKSEESKYKAFN 2051
>ref|NP_223304.1| putative Oxidoreductase [Helicobacter pylori J99]
Length = 217
Score = 21.2 bits (43), Expect = 7.5
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 82 KVDEYMKEKGFSN 94
KV+ Y++EKG+ N
Sbjct: 170 KVEAYLEEKGYLN 182
>ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERASE-ISOMERASE
[Helicobacter pylori J99]
Length = 345
Score = 21.2 bits (43), Expect = 7.5
Identities = 7/27 (25%), Positives = 16/27 (58%)
Query: 2 MEHHKVHTTIQALQAKRKKLLTELAEL 28
+ H++HT + + K +++L E E+
Sbjct: 228 IREHQIHTEVLHIPKKSQEILQESQEV 254
>ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicobacter pylori J99]
Length = 131
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 62 KTSKERRINHSVLLSPSFMAKVDEYMKEKGF 92
+ + RR+ + L + + E KEKGF
Sbjct: 14 RNASMRRLEFTQLYYAKIVVSILEIFKEKGF 44
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 19 KKLLTELAELEAEIKVSSERKSSFNISL 46
KK +TEL + + E+K E+ + L
Sbjct: 8 KKFVTELGKTQKELKNVIEQAKDIGLEL 35
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 91 GFSNRSLLFEKALEFYMLKH 110
G N LLF+ L+F KH
Sbjct: 180 GAMNTDLLFDMPLDFKTKKH 199
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 20.8 bits (42), Expect = 9.8
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 32 IKVSSERKSSFNISLSPSLLAEIEEIEYEEKTSKERR 68
IK + + SF++S L+ IE E+ SKE +
Sbjct: 277 IKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAK 313
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.127 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,012
Number of Sequences: 1491
Number of extensions: 3965
Number of successful extensions: 25
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 111
length of database: 494,079
effective HSP length: 66
effective length of query: 45
effective length of database: 395,673
effective search space: 17805285
effective search space used: 17805285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 42 (20.8 bits)