BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644693|ref|NP_206863.1| hypothetical protein
[Helicobacter pylori 26695]
(496 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222780.1| putative [Helicobacter pylori J99] 637 0.0
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 32 0.028
ref|NP_222962.1| putative [Helicobacter pylori J99] 32 0.049
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.41
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 28 0.41
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 28 0.70
ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99] 28 0.70
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 27 0.92
ref|NP_223385.1| putative [Helicobacter pylori J99] 27 0.92
ref|NP_223319.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_222926.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_223025.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_222779.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_224188.1| putative [Helicobacter pylori J99] 26 2.0
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 26 2.0
ref|NP_223095.1| putative [Helicobacter pylori J99] 26 2.0
ref|NP_223642.1| putative [Helicobacter pylori J99] 26 2.7
ref|NP_223386.1| putative [Helicobacter pylori J99] 26 2.7
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 26 2.7
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 25 3.5
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 25 3.5
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 25 3.5
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 3.5
ref|NP_224137.1| putative [Helicobacter pylori J99] 25 4.5
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 25 4.5
ref|NP_223177.1| putative Glycolate oxidase [Helicobacter p... 25 4.5
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 25 5.9
ref|NP_224153.1| putative [Helicobacter pylori J99] 24 7.7
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 24 7.7
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 7.7
ref|NP_223788.1| putative [Helicobacter pylori J99] 24 7.7
ref|NP_223560.1| putative [Helicobacter pylori J99] 24 7.7
ref|NP_223136.1| putative [Helicobacter pylori J99] 24 7.7
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 24 7.7
ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDU... 24 7.7
ref|NP_222846.1| putative [Helicobacter pylori J99] 24 7.7
ref|NP_222772.1| putative [Helicobacter pylori J99] 24 7.7
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 637 bits (1642), Expect = 0.0
Identities = 339/506 (66%), Positives = 395/506 (77%), Gaps = 16/506 (3%)
Query: 1 MAEWKTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIE 60
MAEWKTDTEEVK+VV +CREFKRSLQEEKCSPFIKDLDSYALKIIVERRK E QL++AI
Sbjct: 1 MAEWKTDTEEVKKVVGRCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKTEMQLEKAIG 60
Query: 61 KLRRAKKKRSSFWGSF--VEGARDLLDMVREIIPPAKLGAEAC----DKVLNLMEDNIEK 114
+L++AK + ++GA +V I PPA++ A A + VL M+++ EK
Sbjct: 61 ELKKAKSNEDDAKVALRVLQGA----SVVSWIWPPARIAATAAIVAAEAVLKFMKEDTEK 116
Query: 115 WEHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDN 174
+ NV LLERMLEIY+ QAKASA L+ AW+ +KK L FYTDKHQEFI+RL AS+AIDN
Sbjct: 117 CKRNVELLERMLEIYSNQAKASANLMNQAWEGIKKRLHFYTDKHQEFIRRLKQASDAIDN 176
Query: 175 EYNIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRIN----ASS 230
EYN P +L E DFE P I Y PKKSV++E LKDLRE+FS SLYADLK++I+ ++
Sbjct: 177 EYNFPTPGVLLEYDFERPAISYTPKKSVFNERLKDLRENFSASLYADLKDKIHHNALSND 236
Query: 231 KLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLG 290
L+R +EQEFEK+LED M + D DEL+ MA + QE EK+LEDLMPS LG
Sbjct: 237 DLERMIAFREQEFEKSLEDWMGAY--SYDENPNDELDRMAISKEQELEKSLEDLMPSVLG 294
Query: 291 VHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQ 350
V SY+ESL LAK CVKN K+AL FTEKIKESPND NAINEAF++LETELERATENLSQ
Sbjct: 295 VPSYNESLTLAKNRCVKNFKEALEGFTEKIKESPNDSNAINEAFDNLETELERATENLSQ 354
Query: 351 KIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIV 410
KI P+LER EN ++ L Y EFLE KE F+VDE+NPYPEEV FNE R AEF+SVFSAIV
Sbjct: 355 KIDPVLERNENYTQKALEYREFLESRKESFIVDEKNPYPEEVSFNEWRWAEFDSVFSAIV 414
Query: 411 PLEDLDKPACAHHALKALEATLKNRDLGFDATELEQIAKGFIPKGYLWHFDANVLGNVAL 470
PLEDL+K ACAHHALKAL+ATLK+ DLGFDATELEQIAKGFIP+GYLWHFDANVLGN+AL
Sbjct: 415 PLEDLNKTACAHHALKALQATLKDNDLGFDATELEQIAKGFIPRGYLWHFDANVLGNLAL 474
Query: 471 VREELLLGVKHTKGYLLWKQFLQTQN 496
VREELLLGVKHTKGY LW +FLQ QN
Sbjct: 475 VREELLLGVKHTKGYSLWTEFLQKQN 500
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 32.3 bits (72), Expect = 0.028
Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 5/93 (5%)
Query: 254 FRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCVKNCKKAL 313
FRG SG +E + + GQE +K LE S+ ++S NL K CV+N +KA
Sbjct: 455 FRGRIQNASG-RVELVTNALGQEIQKMLET--SSNFAKDLANDSANL--KECVQNLEKAS 509
Query: 314 GDFTEKIKESPNDLNAINEAFNHLETELERATE 346
+ + E+ + I + + ++ E E
Sbjct: 510 NSQHKSLMETSKTIENITTSIQGVSSQSEAMIE 542
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 31.6 bits (70), Expect = 0.049
Identities = 20/70 (28%), Positives = 35/70 (49%)
Query: 318 EKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEK 377
++I E +L A EAF L+TE ++ +NL ++ IL + K K+G K+
Sbjct: 74 KEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDS 133
Query: 378 EGFMVDEQNP 387
+ ++ E P
Sbjct: 134 KSALILENLP 143
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 28.5 bits (62), Expect = 0.41
Identities = 39/198 (19%), Positives = 83/198 (41%), Gaps = 17/198 (8%)
Query: 146 SVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFESPTIVYNPKKSVYDE 205
++KK + YT+K E ++RL+ E I E N + + L+ + + K +
Sbjct: 313 TIKKMKEDYTNKTDEALERLD---EIIKTEQNNSQTK-LDTENLKRIIETLRSKIKANQQ 368
Query: 206 HLKDLREDFSFSLYADL-KNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGD 264
+ D ++ S + D KN I+A L + + + ++D+ +
Sbjct: 369 KMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDI--------EKQKKS 420
Query: 265 ELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESP 324
E F EF+ ++++ G+ ++ +N +K +N +K + +IKE
Sbjct: 421 CKEQTWKFLINEFKSDIQEYNKKYCGL---EKGINNLEKEISENQEK-VKKLENEIKELE 476
Query: 325 NDLNAINEAFNHLETELE 342
++ +I N + T L+
Sbjct: 477 KNMVSIKPIVNEINTLLK 494
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 28.5 bits (62), Expect = 0.41
Identities = 20/88 (22%), Positives = 39/88 (43%), Gaps = 20/88 (22%)
Query: 159 QEFIKRLNYASEAIDNEYNIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSL 218
+E+++R+ Y + + YN+ P + + +VYDE ++L+ +
Sbjct: 6 KEYLERIEYLNTLSHHYYNLDEPIVSD---------------AVYDELYQELK-----AY 45
Query: 219 YADLKNRINASSKLDRTTTSKEQEFEKN 246
+ NRI A+S + + EF KN
Sbjct: 46 EEENPNRIQANSPTQKVGATATNEFSKN 73
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 27.7 bits (60), Expect = 0.70
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 66 KKKRSSFWGSFVEGARDLLDMVREIIP 92
K+ ++G F GA+D+LD + E++P
Sbjct: 129 KQPGVKYFGPFTSGAKDILDSLYELLP 155
>ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99]
Length = 280
Score = 27.7 bits (60), Expect = 0.70
Identities = 17/71 (23%), Positives = 36/71 (49%), Gaps = 8/71 (11%)
Query: 157 KHQEFIKRLNYASEAIDNEYNIAPP-EILNESDFESPTIVYNPKKSVYDEHLKDLREDFS 215
K Q + K +++ + ++N A +L+ TI+ NP K + ++ +R++
Sbjct: 205 KDQIYQKSVSFIGNRLSTDHNFAIECHVLD-------TIIENPPKEIALRWVQKIRDNMR 257
Query: 216 FSLYADLKNRI 226
F+ +LKN+I
Sbjct: 258 FNSLKELKNQI 268
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 27.3 bits (59), Expect = 0.92
Identities = 61/230 (26%), Positives = 88/230 (37%), Gaps = 35/230 (15%)
Query: 199 KKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGT 258
KK + D + R S A +N+ N + T EK++ED + T
Sbjct: 130 KKKLNDSEASEKRNWESVVKLALEQNKDNLLLEFSATIPK-----EKSVEDKYENLKVVT 184
Query: 259 DTL---SGDEL---EHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCVKNCKKA 312
TL S D+ + S+ +E E SSL Y E L A+ + ++N K
Sbjct: 185 YTLKQFSEDKFCKNIYSLSYENKELETRFLGACVSSL----YKELL--AQHHNIENFKPC 238
Query: 313 LGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQ---KLGY 369
+ +E+I+ES + E FN ENLS LE + N R K
Sbjct: 239 ILFKSERIEESKKN----QERFNAF-------LENLSFLD---LENFFNHSRNAFFKAAK 284
Query: 370 GEFLEKEKEGFMVDE-QNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKP 418
F E+ +V QN + E V+ N E E + LED D P
Sbjct: 285 SFFDEQNHTPNLVALLQNKFKESVQINTNNEKELEKSMLLLNSLEDRDNP 334
>ref|NP_223385.1| putative [Helicobacter pylori J99]
Length = 101
Score = 27.3 bits (59), Expect = 0.92
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 303 KNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILE 357
K+ + N +AL + KE P D N + E L E E+ + + Q + IL+
Sbjct: 47 KDPLNNACEALDLVVKFKKEHPQDFNELFEILKDLIQEYEQNPDEIKQNLKEILK 101
>ref|NP_223319.1| putative [Helicobacter pylori J99]
Length = 353
Score = 26.9 bits (58), Expect = 1.2
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 55 LQEAIEKLRRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAE 99
L+E +E+L+ A SS G+ GA L D VR++I P KL ++
Sbjct: 142 LKEVLERLKNAGL--SSIPGA---GAEILSDRVRDVIAPKKLSSD 181
>ref|NP_222926.1| putative [Helicobacter pylori J99]
Length = 161
Score = 26.9 bits (58), Expect = 1.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 112 IEKWEHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYAS 169
+E+ + + LLE L +Y+T +AS +L +G + ++ + + + ++ + L Y S
Sbjct: 23 LEQQKKVISLLETYLSVYSTPQEASNKLFKGISQGMELAPEIAQEDEEKRLYVLQYLS 80
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 26.6 bits (57), Expect = 1.6
Identities = 46/221 (20%), Positives = 85/221 (37%), Gaps = 17/221 (7%)
Query: 203 YDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDT-- 260
Y E L+ D + L AD + KLD+ + +E ++ + ++ G +
Sbjct: 33 YQELSARLKGDPEWLLIADDE----CLEKLDQVDWLELKETISQNKNSVCMYKKGNEAQP 88
Query: 261 -LSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCVKNCKKA--LGDFT 317
L G E++ F E K L+ + S+ ++L+ ++ N + LGD
Sbjct: 89 FLEGFEMKIKKPFLPTEMLKVLQKKLGSNASELEPSQNLDPTQEILETNWDELENLGDLE 148
Query: 318 EKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEK 377
KE PN+ + N E E + K + E E K ++ ++E
Sbjct: 149 ALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQ-------KQEV 201
Query: 378 EGFMVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKP 418
DE+ P +E + + + E V + E+L+ P
Sbjct: 202 AENPQDEEKPKDDETQ-GSVEPPKDEEVSKELETQEELETP 241
>ref|NP_222779.1| putative [Helicobacter pylori J99]
Length = 86
Score = 26.6 bits (57), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 1 MAEWKTDTEEVKEVVKKCREFKRSLQEE 28
M+ + DTEEV+E V FK L EE
Sbjct: 1 MSRVQMDTEEVREFVGHLERFKELLNEE 28
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 26.2 bits (56), Expect = 2.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 24 SLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAI----EKLRRAKKKR 69
S QE+ ++D+D+ A + V+ K ++QE + E+L+ KKK+
Sbjct: 140 SFQEKTIVEVMEDIDAQAKALEVDASKKLAKMQETLDFIKERLKNVKKKK 189
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 26.2 bits (56), Expect = 2.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 90 IIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQAKASAELVEGAWKSVKK 149
I P + + V ED I K E LLER+ + Y T + S ++ GA +SV +
Sbjct: 517 IDPSTVIATHTSELVKKYAEDFITKDEVK-SLLERLAKDYPTIVEESKKIPTGAIRSVLQ 575
Query: 150 SL 151
+L
Sbjct: 576 AL 577
>ref|NP_223095.1| putative [Helicobacter pylori J99]
Length = 89
Score = 26.2 bits (56), Expect = 2.0
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 304 NCVKNCKKALGDFTEKIKESPNDL-NAIN 331
NC+KN +K L KIK +P D N IN
Sbjct: 53 NCLKNGEKKLLKAVSKIKNAPKDTKNIIN 81
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 25.8 bits (55), Expect = 2.7
Identities = 43/196 (21%), Positives = 78/196 (38%), Gaps = 19/196 (9%)
Query: 112 IEKWEHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEA 171
I+K N++ L+ + +Y + S + + K+ K L F DK+ E IK A
Sbjct: 2 IDKARKNLKDLKNIF-LYWYEMFGSNDKSKDMMKAFMKDLAFAKDKN-EVIK-------A 52
Query: 172 IDNEYNIAPPEILNESDFESPTIVYNPKKSV-----YDEHLKDLREDFSFSLYADLKNRI 226
DNE + L+ F+ Y + DE+ +L + F+ SL K +I
Sbjct: 53 QDNELVKEFMQELSSLSFKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSSLENLEKQKI 112
Query: 227 NASSKLDRTTTSKEQEFEKNLEDLMPGFR-----GGTDTLSGDELEHMASFRGQEFEKNL 281
N + R + + E K +L F+ ++ + D+ E + +E E
Sbjct: 113 NPIREQKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKE 172
Query: 282 EDLMPSSLGVHSYDES 297
++ + HS+ S
Sbjct: 173 KEPKETLGFAHSFSSS 188
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 25.8 bits (55), Expect = 2.7
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 13 EVVKKCREFKRSLQ--EEKCSPFIKDLDSYALKIIVERRKIEH--QLQEAIEKLRRAKKK 68
E++ E K SL +PF ++ + LK E +K+ H LQ+A +K K K
Sbjct: 209 ELISLSEEEKESLMIVAVAANPFDLGVEHW-LKHQEEFQKLSHIKALQDATQK----KIK 263
Query: 69 RSSFWGSFVEGARD--LLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLER 124
+ + +E A+ + D+V +PPAK + ++ + + +EK ++ L +
Sbjct: 264 ENGGKLTIIEEAKKSVIQDVVYRQMPPAKQALQDINREMEYLNKTLEKRRKEIQDLNK 321
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 25.8 bits (55), Expect = 2.7
Identities = 46/247 (18%), Positives = 103/247 (41%), Gaps = 21/247 (8%)
Query: 12 KEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAK--KKR 69
K+++ +F L K IK+L Y K++++ + +EA+EK R K +
Sbjct: 48 KKLLNNTHDFLEDLVFRKQK--IKELVDYRAKVLLDLENKYKKEKEALEKETRGKILTAK 105
Query: 70 SSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIY 129
S +G + +D + ++++P + ++ + + V+ +
Sbjct: 106 SKAYGDLEQALKD-NPLYKKLLPNPYAYVLNQETFTQEDKERLSYYYPQVKTSSIFKKTT 164
Query: 130 A-TQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESD 188
A T+ KA A L G + SLD ++ + RL + + EY+ +L+ +
Sbjct: 165 ATTKDKAQALLQMGVF-----SLD---EEQNKKASRLALSYKQAIEEYSNNISNLLSRKE 216
Query: 189 FESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFE---- 244
++ +++ +D KD+ + + +L + R+ S +D+ + +E
Sbjct: 217 LDNIDYYLQLERNKFDSKAKDIAQKATNTLIFN-SERLAFSMAIDKINEKYLRGYEAFSN 275
Query: 245 --KNLED 249
KN++D
Sbjct: 276 LLKNVKD 282
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 25.4 bits (54), Expect = 3.5
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 74 GSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLL 122
G F+EGA +L ++E++ ++ + + LNL N H L+
Sbjct: 502 GEFIEGAWELEPKIKELVESNEVAKQVWEYSLNLENLNRNAGVHAAALV 550
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 25.4 bits (54), Expect = 3.5
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 313 LGDFTEK---------IKESPNDLNAINEAFNHLETELERATENLSQKIAPILER-YEND 362
LGDF + +S N + AF ++ + L+ + LE+ +++D
Sbjct: 612 LGDFKNSTLASKDALILAQSLNKKEFYDIAFVLFSDYMQNNEKGLALNLYAFLEKHFKDD 671
Query: 363 KRQKLGYGEFLEKEKE 378
KR L Y + LE EK+
Sbjct: 672 KRMALVYFKLLENEKD 687
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 25.4 bits (54), Expect = 3.5
Identities = 24/97 (24%), Positives = 41/97 (41%), Gaps = 8/97 (8%)
Query: 20 EFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSFWGSFVEG 79
E K L++ PF LD YAL+ KI+ L+E + KK+ + G ++
Sbjct: 289 ELKFLLKDHDLEPFNLALDFYALENPKRALKIKGLLKEIFDSNEPFKKEHLALKGGTLQS 348
Query: 80 ARDLLDMVREIIPPAKLGAEAC-DKVLNLMEDNIEKW 115
+ EI+ AC + V+ ++N +W
Sbjct: 349 LGYQHQKIGEIL-------NACLNSVIENPKNNALEW 378
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.4 bits (54), Expect = 3.5
Identities = 9/38 (23%), Positives = 20/38 (51%)
Query: 229 SSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDEL 266
++KLD + ++++F+ +ED + D L D +
Sbjct: 411 NAKLDNLSKKEKEKFQNEIEDFQKDSKAYLDALGNDHI 448
>ref|NP_224137.1| putative [Helicobacter pylori J99]
Length = 79
Score = 25.0 bits (53), Expect = 4.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 306 VKNCKKALGDFTEKIKESPNDLNAINEA-FNHLETELERATE 346
+K +LGDF E + S + +NEA F L E+ER E
Sbjct: 23 LKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKE 64
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 25.0 bits (53), Expect = 4.5
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 3/62 (4%)
Query: 310 KKALGDFTEKIKESPNDLNAINEAF-NHLETELERATENLSQKIAPILERYENDKRQKLG 368
+KA + IK+ N+LN EAF L+ E + E L ++ + E +KR +G
Sbjct: 84 QKATESYDAVIKQKENELNQEFEAFAKQLQNEKQILKEQLQAQMTVFED--ELNKRVAMG 141
Query: 369 YG 370
G
Sbjct: 142 LG 143
>ref|NP_223177.1| putative Glycolate oxidase [Helicobacter pylori J99]
Length = 459
Score = 25.0 bits (53), Expect = 4.5
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 307 KNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPI 355
+ C + + T K+ P + FNH+E + + +S + P+
Sbjct: 200 EGCLGVISEITLKLLAKPPLKQSAMGVFNHIEDAMNAVYKTMSSGVTPV 248
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 24.6 bits (52), Expect = 5.9
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 223 KNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGD-ELEHMASFRGQEFEKNL 281
K + NA+ + T E++ D+ G SG+ EL+ M G E +
Sbjct: 63 KAKNNATILTNTPTLMDERKSIMQTYDVNHPLECGVCDKSGECELQDMTHLTGVEHQPYA 122
Query: 282 --EDLMP-SSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNA 329
+D S YD +L + + CV CK +G+ +K + DL+A
Sbjct: 123 VADDFKALDSWAKALYDPNLCIMCERCVTTCKDNVGE--NNLKATKADLHA 171
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 24.3 bits (51), Expect = 7.7
Identities = 20/63 (31%), Positives = 26/63 (40%), Gaps = 11/63 (17%)
Query: 348 LSQKIAPILERYENDKRQKLGYGEFL----EKEKEGFMVDEQNPY-------PEEVRFNE 396
L +K + L + ++L FL KEK F+VD PY PE V N
Sbjct: 5 LLKKFSEFLNTQTHFNLKRLNASSFLLETFSKEKHAFVVDLSAPYIGLSKKPPESVLKNT 64
Query: 397 LRL 399
L L
Sbjct: 65 LAL 67
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 24.3 bits (51), Expect = 7.7
Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 4/59 (6%)
Query: 5 KTDTEEVKEVVKKCRE----FKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAI 59
K D E++ + K E F+ QEE I + L+IIV+R K E +++ I
Sbjct: 417 KADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEI 475
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.3 bits (51), Expect = 7.7
Identities = 25/85 (29%), Positives = 35/85 (40%), Gaps = 9/85 (10%)
Query: 331 NEAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPE 390
NEA + L + L+ A + L P + KL E + MV PYP+
Sbjct: 663 NEAIDELGSVLKEALKLLH----PFMPFISESLYHKLSNTEL--ENAHSIMV---MPYPK 713
Query: 391 EVRFNELRLAEFESVFSAIVPLEDL 415
E+ +E EFE + IV L L
Sbjct: 714 EIAQDEKLEHEFEVIKDCIVSLRRL 738
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 24.3 bits (51), Expect = 7.7
Identities = 15/61 (24%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 7 DTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQE-AIEKLRRA 65
+ E++++ + + E K QEE+ +L + K + ++ + ++QE AIE+ R
Sbjct: 167 EREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEFLRQ 226
Query: 66 K 66
K
Sbjct: 227 K 227
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 24.3 bits (51), Expect = 7.7
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 285 MPSSLG-VHSYDESLNLAKKNCVKNC----KKALGDFTEKIKES-PNDLNAINEAFNHLE 338
MPS + +H+ +LN KN VK+ K A DF++ + + D A E+ NH
Sbjct: 1 MPSPVNPIHTNANALNSGAKNEVKDAKNAPKSASKDFSKILNQKISKDKTAPKESPNH-- 58
Query: 339 TELERATENLSQKIAPILER 358
+AT +++ A LE+
Sbjct: 59 -SALKATPKDAKEDAKALEK 77
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 24.3 bits (51), Expect = 7.7
Identities = 36/164 (21%), Positives = 65/164 (38%), Gaps = 25/164 (15%)
Query: 268 HMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDL 327
+M + + +KN D +L +H ++ LN ++N K E + + N
Sbjct: 63 YMRLLKFLDIQKNALDNALRTLFIHELEQPLNSEQQNLAKEL------LNEPVDKKENFE 116
Query: 328 NAINEAFNHLETELERATENLSQKIAPILERYEN---DKRQK---LGYGEFLEKEKEGFM 381
+ E +H E T+ L +L Y + D ++K L G FL+ + + F
Sbjct: 117 SLCQEIADHTHGEY---TKRLKLVEFLMLLAYADGILDSKEKELFLDVGAFLQIDNQDF- 172
Query: 382 VDEQNPYPEEVRFNELR----LAEFESVF--SAIVPLEDLDKPA 419
Y FN + L E +++F ++DL+K A
Sbjct: 173 ---NELYDNFEHFNSIEIPMSLEEAKNLFEIQTHTTMQDLEKKA 213
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 24.3 bits (51), Expect = 7.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 301 AKKNCVKNCKKALGDFTEKIKESPNDLNAINEA 333
A + + + KKA D ESPN NA A
Sbjct: 200 AINSMIDSAKKAAADARRTAPESPNQQNAFTNA 232
>ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDUCTASE [Helicobacter
pylori J99]
Length = 359
Score = 24.3 bits (51), Expect = 7.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 182 EILNESDF-ESPTIVYNPKKSVYDEHLK 208
E L+ESD ES ++Y+PKK D+ L+
Sbjct: 76 EKLHESDHAESVKVIYDPKKISLDKLLR 103
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 24.3 bits (51), Expect = 7.7
Identities = 24/78 (30%), Positives = 33/78 (41%), Gaps = 7/78 (8%)
Query: 276 EFEKNLEDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFN 335
EFE +E+ V + E + AK+N + KAL +F K DLN EAF
Sbjct: 33 EFEDLVEEY--KHFQVLNKAELIESAKENLEQAILKALENFQSKKVLHSTDLNLNFEAFK 90
Query: 336 HL-----ETELERATENL 348
+ E+E E L
Sbjct: 91 DFTLQPYDKEIEAMREEL 108
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 24.3 bits (51), Expect = 7.7
Identities = 17/67 (25%), Positives = 29/67 (42%), Gaps = 3/67 (4%)
Query: 303 KNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLS---QKIAPILERY 359
K ++N K L + K+K DL N+ +TEL L+ +++A E
Sbjct: 151 KQVLENEKADLTNENTKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENL 210
Query: 360 ENDKRQK 366
+ RQ+
Sbjct: 211 TKESRQR 217
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,110
Number of Sequences: 1491
Number of extensions: 27388
Number of successful extensions: 126
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 43
length of query: 496
length of database: 494,079
effective HSP length: 81
effective length of query: 415
effective length of database: 373,308
effective search space: 154922820
effective search space used: 154922820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)