BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645243|ref|NP_207413.1| adenylate kinase (adk)
[Helicobacter pylori 26695]
(191 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223279.1| ADENYLATE KINASE [Helicobacter pylori J99] 342 5e-96
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 29 0.071
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 28 0.12
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 28 0.12
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.16
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 28 0.21
ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter... 27 0.46
ref|NP_223117.1| putative [Helicobacter pylori J99] 27 0.46
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 25 1.0
ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEI... 25 1.3
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 25 1.7
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 24 2.3
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 2.3
ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helic... 24 2.3
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 24 2.3
ref|NP_222776.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 23 3.9
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 23 3.9
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 23 3.9
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 23 5.1
ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERA... 23 6.6
ref|NP_223482.1| THIOREDOXIN REDUCTASE [Helicobacter pylori... 23 6.6
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 23 6.6
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 23 6.6
ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobact... 23 6.6
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 23 6.6
ref|NP_223555.1| Hydrogenase expression/formation protein [... 22 8.6
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 22 8.6
ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PRO... 22 8.6
>ref|NP_223279.1| ADENYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 342 bits (876), Expect = 5e-96
Identities = 179/191 (93%), Positives = 184/191 (95%)
Query: 1 MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQG 60
MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQG
Sbjct: 1 MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQG 60
Query: 61 ELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVS 120
ELVPLEIVVETILSAIKSS KGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVS
Sbjct: 61 ELVPLEIVVETILSAIKSSSKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVS 120
Query: 121 ENTAKERVLGRSRGADDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYKAIDGERSIEEIVG 180
ENTAKERVLGRSRGADDNE+VFHNRMRVFLDPL EIQNFYK K ++K I+GERSIEEIV
Sbjct: 121 ENTAKERVLGRSRGADDNERVFHNRMRVFLDPLVEIQNFYKAKHLHKIINGERSIEEIVN 180
Query: 181 EMQEYILSFGN 191
EMQ+YILSF N
Sbjct: 181 EMQKYILSFAN 191
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 29.3 bits (64), Expect = 0.071
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 6 LIIGAPGSGKTTDAELIAKNN--SETIAHFSTGDLLRAESAKKTE---RGLLIEKFTSQG 60
LI+G G+GKTT +AK + A GD RA + K+ + L ++ +++
Sbjct: 90 LIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKE 149
Query: 61 ELVPLEIVVETILSAI 76
P + TI SAI
Sbjct: 150 GSDPSSLAYNTIESAI 165
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 28.5 bits (62), Expect = 0.12
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 49 RGLLIEKFTSQGELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNE 108
+G+L + +GE + ++ +L+ +K + KG++L EL+
Sbjct: 162 QGVLSMRHRIKGESFKIGDSIKAVLTQVKRTKKGLLL----------------ELSRTTP 205
Query: 109 VILKSVIEVEVSENTAKE-RVLGRSRGADDNEKVFHNRMRVFLDPLG 154
+L++++E+EV E KE ++ +R + KV +DP+G
Sbjct: 206 KMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSHNSRIDPIG 252
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 28.5 bits (62), Expect = 0.12
Identities = 26/90 (28%), Positives = 42/90 (45%), Gaps = 21/90 (23%)
Query: 2 KQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGE 61
K L+IG GSGKT A+ +AK+ IA +++ TE G + E
Sbjct: 148 KSNILLIGPTGSGKTLMAQTLAKHLDIPIA--------ISDATSLTEAGYVGE------- 192
Query: 62 LVPLEIVVETILSA----IKSSGKGIILID 87
+E ++ +L A ++ + KGI+ ID
Sbjct: 193 --DVENILTRLLQASDWNVQKAQKGIVFID 220
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 28.1 bits (61), Expect = 0.16
Identities = 38/169 (22%), Positives = 71/169 (41%), Gaps = 23/169 (13%)
Query: 1 MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQG 60
+K + I GA GSGKTT + + KN +E + ++ A L IE + Q
Sbjct: 41 LKSINFIYGANGSGKTTTSSFL-KNLAE---NGIEDKFANSKIAWYNNESLKIEVYNKQF 96
Query: 61 ELVPLEIVVETILSAIKSSGKGIILIDGYP-RSVEQMQALDKELNAQNEVILKSVIEVEV 119
+ L S KGI + ++E++++ + +N +NE +K+ ++V
Sbjct: 97 KEEQLR----------NSQVKGIFTLGKKTNENLEKIESKKESINKENEKKIKNEASLQV 146
Query: 120 -SENTAKERVLGRSRGADDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYK 167
++ KE D + + N + + EI +K K+ +K
Sbjct: 147 LTQKKEKEE-------KDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFK 188
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 27.7 bits (60), Expect = 0.21
Identities = 34/143 (23%), Positives = 59/143 (40%), Gaps = 10/143 (6%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
L+IG G GKT+ AE +A IA + L+ + L++ +G+
Sbjct: 202 LLIGEAGVGKTSIAEALALK----IAQKEVPEFLQEYEVYSLDLALMVAGAKYRGD---F 254
Query: 66 EIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAK 125
E ++ L I+ +G+ I+ ID + + L+A N ILK V+ + S
Sbjct: 255 EKRLKKTLKEIQQNGRIILFIDEIHTLLGAGSSNAGSLDAAN--ILKPVL-TDGSLKCLG 311
Query: 126 ERVLGRSRGADDNEKVFHNRMRV 148
R + +K F+ R +
Sbjct: 312 ATTFEEYRSVFEKDKAFNRRFSI 334
Score = 23.5 bits (49), Expect = 3.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 101 KELNAQNEVILKSVIEVEVSENTAKERVLGRSRGADDNEKVFHNRMRVFLDPLGEIQNFY 160
K L + VILK EV ++ + GA + +K+ HN ++ L + +Q+F
Sbjct: 656 KALALEQGVILKFHKEVV---KCIAQKSYQTTLGAREIKKIIHNEIKTQLSDILLLQSFK 712
Query: 161 KNKKV 165
K K+
Sbjct: 713 KPCKI 717
>ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter pylori J99]
Length = 399
Score = 26.6 bits (57), Expect = 0.46
Identities = 22/76 (28%), Positives = 34/76 (43%), Gaps = 5/76 (6%)
Query: 7 IIGAPGSGKTT--DAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVP 64
I+G + KTT E+ K + A + G LLR ++ ERG+++ K G + P
Sbjct: 250 IVGIRATQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCK---PGSITP 306
Query: 65 LEIVVETILSAIKSSG 80
+ E I K G
Sbjct: 307 HKKFEEEIYVLSKEEG 322
>ref|NP_223117.1| putative [Helicobacter pylori J99]
Length = 391
Score = 26.6 bits (57), Expect = 0.46
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 9 GAPGSGKTTDAELIAKNNSETIAHFSTGD 37
G PG GKT+ A++IA++ I F+ D
Sbjct: 44 GPPGVGKTSLAQIIARSLKRPILSFNATD 72
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 25.4 bits (54), Expect = 1.0
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 5/43 (11%)
Query: 7 IIGAPGSGKTTDAELIAKNNSETIAH-----FSTGDLLRAESA 44
I+G GSGK++ A L+ + N H F T +LL+ A
Sbjct: 32 IVGESGSGKSSIANLVMRLNPRFKPHNGEILFETTNLLKESEA 74
>ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
J99]
Length = 321
Score = 25.0 bits (53), Expect = 1.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 56 FTSQGELVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVI 110
F EL+PL+ V+E + AI K I + G P + + +L+A N+ +
Sbjct: 36 FFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLDEFIAKLHAYNKEV 90
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 24.6 bits (52), Expect = 1.7
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
+++G PG GKT E +A + I + L + + LL+ +GE
Sbjct: 201 ILLGEPGVGKTAVVEGLA----QRIVNKEVPKTLLNKRVVALDLSLLVAGAKYRGE---F 253
Query: 66 EIVVETILSAIKSSGKGIILID 87
E ++ ++ +K S I+ ID
Sbjct: 254 EERLKKVIEEVKKSANVILFID 275
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 24.3 bits (51), Expect = 2.3
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 108 EVILKSVIEVEVSENTAKERVLGRSRGADDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYK 167
E+ L++ ++ +V+ T+ E + + NE + R + L QNF+ K K
Sbjct: 520 ELFLETELKDKVAVITSYEPNIADLKDCGSNESEESYKYRAYCKML---QNFFNEKDEKK 576
Query: 168 AIDGERSIEEIV 179
A++ + EE V
Sbjct: 577 ALNKIKEFEEEV 588
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 24.3 bits (51), Expect = 2.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 2 KQLFLIIGAPGSGKTTDAELIAKNNSETIA 31
K++ +++G G GKTT +A S +A
Sbjct: 252 KRILMLVGPTGVGKTTTLAKLAARYSRMLA 281
>ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
Length = 336
Score = 24.3 bits (51), Expect = 2.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETI 30
L G PG GKT+ + +IAK I
Sbjct: 57 LFFGPPGLGKTSISHIIAKEMETNI 81
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 24.3 bits (51), Expect = 2.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 6 LIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPL 65
L++G PG+GKT A+ +A + FS G E + + F + + P
Sbjct: 207 LLVGPPGTGKTLLAKAVA--GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPS 264
Query: 66 EIVVETILSAIKSSGKG 82
I ++ I + KS G
Sbjct: 265 IIFIDEIDAIGKSRAAG 281
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 24.3 bits (51), Expect = 2.3
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 2/59 (3%)
Query: 42 ESAKKTERGLLIEKFTSQGELVPLEIVVETILSAIKSSGKGIIL--IDGYPRSVEQMQA 98
++ + E +E FT + P+EI I +I + G+ L YP E+ QA
Sbjct: 83 QNFRDLEEDFSLESFTHCTDFNPIEIYAYCISRSINNMENGVFLKYFLSYPIKYEKHQA 141
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 23.5 bits (49), Expect = 3.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 9 GAPGSGKTTDAELIAKNNSETIAHFSTGDL 38
G PG GKT+ A IAK + + G L
Sbjct: 367 GPPGVGKTSLANSIAKAIERPLVRIALGGL 396
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 23.5 bits (49), Expect = 3.9
Identities = 29/150 (19%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 2 KQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGE 61
+ +F + A + LIA +N + I L++ + + + LIE+F+
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVR-----LIKTSPSPEAAKNALIERFSLSE- 420
Query: 62 LVPLEIVVETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQ---NEVILKSVIEVE 118
+ + ++E L + + I + Y +E + L+ L ++ NEV+ ++EV+
Sbjct: 421 -IQSKAILEMRLQRLTGLERDKIK-EEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVK 478
Query: 119 VSENTAKERVLGRSRGADDNEKVFHNRMRV 148
++ + + S + D E + N V
Sbjct: 479 EQFSSPRRTEIQESYESIDTEDLIANEPMV 508
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 23.5 bits (49), Expect = 3.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 2 KQLFLIIGAPGSGKTTDAELIA---KNNSETIAHFSTGDLLRAESAKKTE 48
K+ I+G GSGK+T +A K +S T++ D+ S K E
Sbjct: 26 KESLAILGVSGSGKSTLLSHLATMLKPDSGTVSLLEHQDIYALNSKKLLE 75
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.1 bits (48), Expect = 5.1
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 70 ETILSAIKSSGKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAKERVL 129
ETI + I+L D + V QA + NE + + +++S+ + +
Sbjct: 797 ETIEKLCELDNHPIVLTDDDRKCVFNQQATSERFKRANEEMHDPITILQLSDCDRHFKQI 856
Query: 130 GRSRGADDNEKVFHNRMRVFLDPLGEIQNFYKNKKVYKAIDGERSIEE 177
A+D K N+ E+ +K + +Y GE +IE+
Sbjct: 857 EDCFSANDRNKYAKNKQM-------ELSMAFKTRLLY---GGEDAIEK 894
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 23.1 bits (48), Expect = 5.1
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 27 SETIAHFSTGDLLR--AESAKKTERGLLIEKFTSQGELVPLEIVVETILSAIKSSGK 81
S+ I+ F GD + A+ + +R LLI+ PL+I V++ +S I S GK
Sbjct: 86 SKPISDFVLGDKVGFDAKILESNDRILLIK---------PLQIGVDSNISVIDSEGK 133
>ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE [Helicobacter pylori
J99]
Length = 393
Score = 22.7 bits (47), Expect = 6.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 148 VFLDPLGEIQNFYK 161
+ +D LGE+ NFYK
Sbjct: 293 LLVDRLGELNNFYK 306
>ref|NP_223482.1| THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 311
Score = 22.7 bits (47), Expect = 6.6
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 159 FYKNKKVYKAIDGERSIEEIV 179
FYKNK+V G+ ++EE +
Sbjct: 140 FYKNKEVAVLGGGDTAVEEAI 160
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 22.7 bits (47), Expect = 6.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 6 LIIGAPGSGKTTDAELIA 23
L++G PG GKT A+ +A
Sbjct: 199 LLVGPPGVGKTMIAKALA 216
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 22.7 bits (47), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
Query: 4 LFLIIGAPGSGKTT----DAELIAKNNSETI 30
L+L+ G+PG GK+T A +AKN + +
Sbjct: 91 LYLVGGSPGVGKSTLLLKVASGLAKNQQKVL 121
>ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobacter pylori J99]
Length = 307
Score = 22.7 bits (47), Expect = 6.6
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 2/60 (3%)
Query: 106 QNEVILKSVIEVEVSENTAKERVLGRSRGADDNEKVFHNRMRVFLDPLGEIQNFYKNKKV 165
+N + V+++ + + E LGR G +DN V + V ++P E + F K +V
Sbjct: 112 ENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISV-DEKDAVLVNP-KEAERFVKESQV 169
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 22.7 bits (47), Expect = 6.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 6 LIIGAPGSGKTT 17
L+IGA GSGK+T
Sbjct: 443 LVIGATGSGKST 454
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 22.3 bits (46), Expect = 8.6
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 IGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKK-TERGLLIEKFTSQGELVPLE 66
+ +PGSGKTT E +A GDL A + ++G+ + T+ GE LE
Sbjct: 52 MSSPGSGKTTMLENLADFKDFKFC-VVEGDLQTNRDADRLRKKGVSAHQITT-GEACHLE 109
Query: 67 I-VVETILSAIKSSG 80
++E +K G
Sbjct: 110 ASMIEGAFDLLKDEG 124
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 533
Score = 22.3 bits (46), Expect = 8.6
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 7 IIGAPGSGKTTDAELIAKN 25
+IGA G+GK+T ++++K+
Sbjct: 32 LIGANGAGKSTFLKILSKS 50
>ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN [Helicobacter
pylori J99]
Length = 268
Score = 22.3 bits (46), Expect = 8.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 3 QLFLIIGAPGSGKTTDAELIA 23
++ I+G G GK+T A+++A
Sbjct: 40 EVLSIVGESGCGKSTTAKILA 60
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.134 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,641
Number of Sequences: 1491
Number of extensions: 8019
Number of successful extensions: 55
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 31
length of query: 191
length of database: 494,079
effective HSP length: 73
effective length of query: 118
effective length of database: 385,236
effective search space: 45457848
effective search space used: 45457848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)