BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645244|ref|NP_207414.1| inorganic pyrophosphatase
(ppa) [Helicobacter pylori 26695]
(173 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223282.1| inorganic pyrophosphatase [Helicobacter py... 343 2e-96
ref|NP_223659.1| putative [Helicobacter pylori J99] 29 0.061
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 28 0.10
ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicob... 27 0.23
ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99] 27 0.39
ref|NP_223787.1| putative [Helicobacter pylori J99] 26 0.51
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 26 0.67
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 25 0.88
ref|NP_224090.1| putative [Helicobacter pylori J99] 25 1.5
ref|NP_223281.1| putative lipopolysaccharide biosynthesis p... 23 3.3
ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99] 23 4.4
ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobact... 23 4.4
ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobact... 23 5.7
ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobact... 23 5.7
ref|NP_224088.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 22 9.7
>ref|NP_223282.1| inorganic pyrophosphatase [Helicobacter pylori J99]
Length = 173
Score = 343 bits (879), Expect = 2e-96
Identities = 170/173 (98%), Positives = 173/173 (99%)
Query: 1 MNLEKLEVSHDADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT 60
MNL++LEVSHDADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT
Sbjct: 1 MNLDQLEVSHDADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNT 60
Query: 61 LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVK 120
LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKL+ALPIDKIDPTHSYVK
Sbjct: 61 LGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLLALPIDKIDPTHSYVK 120
Query: 121 DIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG 173
DIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG
Sbjct: 121 DIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG 173
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 29.3 bits (64), Expect = 0.061
Identities = 16/58 (27%), Positives = 32/58 (54%), Gaps = 2/58 (3%)
Query: 89 VGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPN 146
+ + N +D S D++ +L ID+ID + + ++SKH L ++ F++ D + N
Sbjct: 303 IALFNHKDTS--DDEKESLSIDRIDKRKPVSEHLKNMSKHELYELLGFYQKELDKKQN 358
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 28.5 bits (62), Expect = 0.10
Identities = 25/107 (23%), Positives = 45/107 (41%), Gaps = 1/107 (0%)
Query: 68 VDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSK 127
+D LVL AF G + V + DE + I L ++ +K I L+K
Sbjct: 238 IDELVLKINAFSRGDKDLRAKIDVGDRNDEISQVGRGINLFVENARLIMEEIKGISTLNK 297
Query: 128 HTLDKIKHFFETYKDLEPNKWVKVKGFENKESAI-KVLEKAIKAYQG 173
++DK+ + + N + +NK + I ++ +I+ QG
Sbjct: 298 TSMDKLVQITQETQKSMKNSSTTLNSVKNKATDIASMMNASIEQSQG 344
>ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicobacter pylori J99]
Length = 129
Score = 27.3 bits (59), Expect = 0.23
Identities = 14/44 (31%), Positives = 22/44 (49%)
Query: 70 ALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
A+VLS F A +K L N E D+K++ + +D+ D
Sbjct: 24 AIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHD 67
Score = 22.3 bits (46), Expect = 7.4
Identities = 10/26 (38%), Positives = 13/26 (49%)
Query: 2 NLEKLEVSHDADSLCVVIEISKHSNI 27
N + E S D VVI + +H NI
Sbjct: 44 NAKNAEKSQPNDQKVVVISVDEHDNI 69
>ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99]
Length = 255
Score = 26.6 bits (57), Expect = 0.39
Identities = 10/19 (52%), Positives = 16/19 (83%)
Query: 152 KGFENKESAIKVLEKAIKA 170
KG ENK++ IK +++AI+A
Sbjct: 230 KGLENKDNGIKTMQEAIEA 248
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.2 bits (56), Expect = 0.51
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 111 KIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNK 147
K+D + + I DL K ++I + ET KD+E K
Sbjct: 382 KLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQK 418
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 25.8 bits (55), Expect = 0.67
Identities = 28/102 (27%), Positives = 51/102 (49%), Gaps = 21/102 (20%)
Query: 76 VAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKH 135
VAF G +VG ++ E ESG + +AL D+I Y +I K+++ ++K
Sbjct: 612 VAFSLG------VVGTISFEAESGQVLENLALQSDEI---AFYPFEI----KNSVVRLKE 658
Query: 136 FFETYKD----LEPNKWVKVKGFENKESAIKVLEKAIKAYQG 173
F++ ++ LEP + K K F S ++++ I ++G
Sbjct: 659 FYQAFEKDLGVLEPKRIAK-KFF---NSLVEIITALIAPFKG 696
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 25.4 bits (54), Expect = 0.88
Identities = 17/55 (30%), Positives = 24/55 (42%), Gaps = 1/55 (1%)
Query: 112 IDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEK 166
I PT + +DD+ TL IK F Y N V V G N + ++ +K
Sbjct: 182 ITPTMDAIGFMDDIQNWTLKDIKKFHSLYYQ-PKNAIVLVVGDVNSQKVFELTKK 235
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 24.6 bits (52), Expect = 1.5
Identities = 15/55 (27%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Query: 93 NMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNK 147
++E++ G ++ P+ I HS + + + T+ KIK E +K L NK
Sbjct: 8 SLEEKGGENKNEKETPLKGI---HSKIPSLKQALEQTISKIKSSKEFFKQLLHNK 59
>ref|NP_223281.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 444
Score = 23.5 bits (49), Expect = 3.3
Identities = 15/47 (31%), Positives = 19/47 (39%)
Query: 123 DDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIK 169
DDL+K+ +K Y DL N K K A+ E IK
Sbjct: 258 DDLNKNIAEKYDDLTGKYDDLNKNIAEKYDDLMGKYEALLAKETNIK 304
>ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99]
Length = 290
Score = 23.1 bits (48), Expect = 4.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 22 SKHSNIKYELDKESGALMVDRVLYGAQ 48
SKH I Y+ D E+ LM GA+
Sbjct: 161 SKHPGIHYQKDNETFHLMEQLATQGAE 187
>ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobacter pylori J99]
Length = 307
Score = 23.1 bits (48), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 76 VAFQAGSVVKARLVGVLNMEDESGMDEK 103
+A AG V+A L ++ +ED +DEK
Sbjct: 123 MAHNAGVSVEAELGRLMGIEDNISVDEK 150
>ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 436
Score = 22.7 bits (47), Expect = 5.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 120 KDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAI 161
K ID HT+ KD P +V V F+N + AI
Sbjct: 250 KIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAI 291
>ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 454
Score = 22.7 bits (47), Expect = 5.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 120 KDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAI 161
K ID HT+ KD P +V V F+N + AI
Sbjct: 250 KIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAI 291
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 22.3 bits (46), Expect = 7.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 25 SNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSD 75
S IK + + + +RVL+GA + P G + P D L+ +D
Sbjct: 103 STIKKDENITANNTKKERVLFGALSNPLLEGAIDKVSAKHFIPPDTLLSAD 153
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 21.9 bits (45), Expect = 9.7
Identities = 11/26 (42%), Positives = 13/26 (49%)
Query: 119 VKDIDDLSKHTLDKIKHFFETYKDLE 144
VK+ S H+ D K E YK LE
Sbjct: 78 VKEETKTSFHSKDIFKEILEDYKHLE 103
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,937
Number of Sequences: 1491
Number of extensions: 9102
Number of successful extensions: 28
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 17
length of query: 173
length of database: 494,079
effective HSP length: 72
effective length of query: 101
effective length of database: 386,727
effective search space: 39059427
effective search space used: 39059427
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)