BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645246|ref|NP_207416.1| hypothetical protein
[Helicobacter pylori 26695]
(120 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223284.1| putative [Helicobacter pylori J99] 229 2e-62
ref|NP_223630.1| septum formation protein [Helicobacter pyl... 25 0.80
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 24 1.4
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 23 3.0
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 22 5.2
ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [H... 22 5.2
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 22 6.8
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 22 6.8
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 21 8.8
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 8.8
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 21 8.8
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 21 8.8
>ref|NP_223284.1| putative [Helicobacter pylori J99]
Length = 120
Score = 229 bits (584), Expect = 2e-62
Identities = 117/120 (97%), Positives = 118/120 (97%)
Query: 1 MGAVVVLFLTLVLLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL 60
MG VVLFLTL+LLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL
Sbjct: 1 MGVAVVLFLTLILLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL 60
Query: 61 QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP 120
QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP
Sbjct: 61 QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP 120
>ref|NP_223630.1| septum formation protein [Helicobacter pylori J99]
Length = 493
Score = 24.6 bits (52), Expect = 0.80
Identities = 14/62 (22%), Positives = 28/62 (44%), Gaps = 11/62 (17%)
Query: 45 VYTYKQNQQNQQEIALQRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLV 104
VYT K N +N ++I +Q G+++ N N + +++ L + + V
Sbjct: 181 VYTEKNNIENLEKIMIQ-----------SGVEIENIVINSYAASIATLSNDERELGVACV 229
Query: 105 DL 106
D+
Sbjct: 230 DM 231
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 23.9 bits (50), Expect = 1.4
Identities = 11/37 (29%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Query: 43 ISVYTYKQNQQNQQEIALQRAFLRGETLLCKGIKVNN 79
+ + ++N + A+ RA GETL+ +G+K++N
Sbjct: 192 VGIVRIQKNVEIGANTAIDRAVF-GETLIKEGVKIDN 227
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 22.7 bits (47), Expect = 3.0
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 49 KQNQQNQQEIALQRAFLRGETLLCKGIKV 77
K NQ N + ALQ T + G+K+
Sbjct: 8 KYNQMNHYQNALQNKINDANTQIASGLKI 36
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 21.9 bits (45), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 4/28 (14%)
Query: 75 IKVNNQ----TFNLVSGTLSFLGKKQTP 98
IK N+ ++NL+ LS L KK+TP
Sbjct: 191 IKANSSYYKLSYNLLPLLLSLLSKKKTP 218
>ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 21.9 bits (45), Expect = 5.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 38 IIGASISVYTYKQNQQNQQEIALQ 61
++G +IS YKQ + QE+ L+
Sbjct: 187 VMGITISSEQYKQANKRVQELGLE 210
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 21.6 bits (44), Expect = 6.8
Identities = 6/19 (31%), Positives = 13/19 (67%)
Query: 30 ILAFLIVGIIGASISVYTY 48
++AF+ +G+IG +Y +
Sbjct: 167 VIAFISIGVIGIIYQIYLH 185
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 21.6 bits (44), Expect = 6.8
Identities = 15/54 (27%), Positives = 25/54 (45%), Gaps = 2/54 (3%)
Query: 50 QNQQNQQEIALQRAFLRGETLLCKGIKVNNQTFNLVSGTLSF--LGKKQTPMKD 101
QN+ N + +L++ G+ +L KG +T L L F L K P+ +
Sbjct: 91 QNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSIHALEFHILSKTIVPLPE 144
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 21.2 bits (43), Expect = 8.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 93 GKKQTPMKDVLVDLD 107
G+ QTP +LV+LD
Sbjct: 170 GRVQTPALSILVELD 184
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 21.2 bits (43), Expect = 8.8
Identities = 12/53 (22%), Positives = 25/53 (46%), Gaps = 3/53 (5%)
Query: 48 YKQNQQNQQEIALQRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMK 100
YK N ++ + ++ + LL K IK+ + + + GKK+ P++
Sbjct: 275 YKPNCVSESLLVYRK---KAPFLLDKNIKIAEKRLKPIKQNHTLFGKKELPIE 324
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 21.2 bits (43), Expect = 8.8
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Query: 63 AFLRGET-LLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKD 115
AFL E +L G+K ++ S L+ K+ K V V + +C T KD
Sbjct: 49 AFLDQENKILYVGVKEDDVHLLRESACLAVRTLKKLAFKSVKVGVYTCDTHAKD 102
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 21.2 bits (43), Expect = 8.8
Identities = 10/34 (29%), Positives = 13/34 (37%)
Query: 50 QNQQNQQEIALQRAFLRGETLLCKGIKVNNQTFN 83
Q Q+ Q +Q + G KG Q FN
Sbjct: 359 QTNQSTQHPQIQNSSFSGSATTLKGFATFEQAFN 392
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.142 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,421
Number of Sequences: 1491
Number of extensions: 4971
Number of successful extensions: 25
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 12
length of query: 120
length of database: 494,079
effective HSP length: 67
effective length of query: 53
effective length of database: 394,182
effective search space: 20891646
effective search space used: 20891646
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 43 (21.2 bits)