BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645251|ref|NP_207421.1| hypothetical protein
[Helicobacter pylori 26695]
(110 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223289.1| putative [Helicobacter pylori J99] 208 3e-56
ref|NP_222941.1| putative [Helicobacter pylori J99] 30 0.021
ref|NP_224090.1| putative [Helicobacter pylori J99] 28 0.046
ref|NP_223741.1| putative [Helicobacter pylori J99] 26 0.23
ref|NP_222918.1| putative [Helicobacter pylori J99] 26 0.30
ref|NP_222869.1| putative [Helicobacter pylori J99] 26 0.30
ref|NP_224155.1| putative [Helicobacter pylori J99] 25 0.51
ref|NP_223037.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99] 23 2.5
ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobac... 23 2.5
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 22 3.3
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 22 3.3
ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobac... 22 5.6
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 22 5.6
ref|NP_223644.1| putative [Helicobacter pylori J99] 21 7.4
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 21 9.6
ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacte... 21 9.6
ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Heli... 21 9.6
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 21 9.6
>ref|NP_223289.1| putative [Helicobacter pylori J99]
Length = 352
Score = 208 bits (529), Expect = 3e-56
Identities = 102/106 (96%), Positives = 103/106 (96%)
Query: 1 MLKKSLLLLVFLVLQLSGAEENNQAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDK 60
MLKKSLLLLVFL+LQLSGAEENNQAPKNTPPELNPAN KGAPN NTQITPKNDNSNLLDK
Sbjct: 1 MLKKSLLLLVFLILQLSGAEENNQAPKNTPPELNPANTKGAPNPNTQITPKNDNSNLLDK 60
Query: 61 LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASG 106
LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFA G
Sbjct: 61 LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFAVG 106
Score = 28.9 bits (63), Expect = 0.035
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASG 106
DY A + SC+NGN GC+ G
Sbjct: 191 DYYKAMSYYKFSCENGNDMGCYNLG 215
Score = 27.7 bits (60), Expect = 0.079
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 61 LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGC 102
LGS N G+ + + D Q A LFS +CDNG + C
Sbjct: 283 LGSCNNLGVLYQKGLGVPQ--DDQRALDLFSYACDNGFESSC 322
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 29.6 bits (65), Expect = 0.021
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 80 KGDYQGAFKLFSQSCDNGNAAGCFASG 106
K D Q AF F Q+CD G+A C G
Sbjct: 256 KKDPQKAFNYFKQACDMGSAVSCSRMG 282
Score = 26.6 bits (57), Expect = 0.18
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 71 LSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASG 106
L G K G+Y A F ++C++G + GC G
Sbjct: 31 LGIGERAYKSGNYSKAASYFKKACNDGVSEGCTQLG 66
Score = 26.2 bits (56), Expect = 0.23
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASGG 107
D + A + + CD G+ GCFA G
Sbjct: 294 DLRKALDNYERGCDMGDEVGCFALAG 319
Score = 25.8 bits (55), Expect = 0.30
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASGG 107
DY+ A + + +C + GCF GG
Sbjct: 78 DYKKALEYYKTACQADDREGCFGLGG 103
Score = 23.1 bits (48), Expect = 1.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 73 AGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASG 106
AG+D D++ AF ++C N+ GC + G
Sbjct: 217 AGLD----EDFEVAFDYLQKACALNNSGGCASLG 246
Score = 21.6 bits (44), Expect = 5.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 80 KGDYQGAFKLFSQSCDNGNAAGCFASG 106
KG+ A + +SC+ A GC+ G
Sbjct: 146 KGNAAQAVTYYQKSCNFDMAKGCYILG 172
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 28.5 bits (62), Expect = 0.046
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 42 PNSNTQITPK-----------NDNSNLLDKLGSPENAQTELSAGIDLAKKGDYQGAFK 88
PNSN + P D +N +L NAQ EL+ G+ A+ G Y+ A +
Sbjct: 269 PNSNAFLKPNARLASKLFLMFKDETNAYKQLQKSANAQDELALGLLQARLGHYKQALE 326
Score = 23.5 bits (49), Expect = 1.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 58 LDKLGSPENAQTELSAGIDLAKKGDYQGAFKLF 90
L KL P N + G+ +KGD + A F
Sbjct: 773 LGKLDDPNNENIRYALGLLYQRKGDLKSALNHF 805
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 26.2 bits (56), Expect = 0.23
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 58 LDKLGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASG 106
L L + ++ + + G K+ D+ A K F ++CD +GCF G
Sbjct: 20 LGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKENSGCFNLG 68
Score = 23.1 bits (48), Expect = 1.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASG 106
+++ A +S++C+ N GCF G
Sbjct: 224 NFKEALARYSKACELENGGGCFNLG 248
Score = 23.1 bits (48), Expect = 1.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 86 AFKLFSQSCDNGNAAGCFASGG 107
A + +S++CD A GC + GG
Sbjct: 120 ALQYYSKACDLKYAEGCASLGG 141
Score = 22.7 bits (47), Expect = 2.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASG 106
D + A + ++CD ++ GCF +G
Sbjct: 188 DLKKALASYDKACDLKDSPGCFNAG 212
Score = 22.7 bits (47), Expect = 2.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASG 106
D++ A + F+++CD + GC G
Sbjct: 152 DFKKAVEYFTKACDLNDGDGCTILG 176
>ref|NP_222918.1| putative [Helicobacter pylori J99]
Length = 250
Score = 25.8 bits (55), Expect = 0.30
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 66 NAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASG 106
+A+ +S GI+ KK D+ A F ++C+ GC G
Sbjct: 28 DAKELVSLGIESVKKQDFAQAKAHFEKACELKEGFGCVFLG 68
Score = 22.7 bits (47), Expect = 2.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASG 106
D + A L+ ++CD ++ GC +G
Sbjct: 152 DLRKALDLYEKACDLKDSPGCINAG 176
Score = 22.3 bits (46), Expect = 3.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFASG 106
D + A + +S+SC+ +A GC G
Sbjct: 116 DAKKASQYYSKSCELNHAEGCTVLG 140
>ref|NP_222869.1| putative [Helicobacter pylori J99]
Length = 305
Score = 25.8 bits (55), Expect = 0.30
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 79 KKGDYQGAFKLFSQSCDNGNAAGCFASG 106
K+GDY A + +SC+ GC + G
Sbjct: 40 KRGDYHRAVAFYKRSCNLRMGVGCTSLG 67
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 25.0 bits (53), Expect = 0.51
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 82 DYQGAFKLFSQSCDNGNAAGCFA 104
D++ AF+ +++C+ +A GC+A
Sbjct: 192 DFKKAFEYSAKACELNDAKGCYA 214
Score = 24.6 bits (52), Expect = 0.67
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 52 NDNSNLLD------KLGSPENAQTELSAGIDLAK--KGDYQGAFKLFSQSCDNGNAAGCF 103
ND N L+ KL + E + D+ K K D + + +S++C+ N GC
Sbjct: 119 NDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKD-LEYYSKACELNNGGGCS 177
Query: 104 ASGGD 108
GGD
Sbjct: 178 KLGGD 182
Score = 22.7 bits (47), Expect = 2.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 73 AGIDLAKKGDYQGAFKLFSQSCDNGNAAGC 102
+GI + ++ A K F ++C + +A GC
Sbjct: 36 SGITIYTDKNFTRAKKYFEKACKSNDADGC 65
>ref|NP_223037.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.5 bits (49), Expect = 1.5
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 90 FSQSCDNGNAAGCFASGG 107
+S++CD GCF GG
Sbjct: 162 YSKACDLNEGLGCFNLGG 179
Score = 23.1 bits (48), Expect = 1.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 74 GIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASG 106
G+ K D+ A K F ++C+ GC A G
Sbjct: 2 GVKSNKAKDFIQAKKYFEKACNLNYGGGCGALG 34
>ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99]
Length = 604
Score = 22.7 bits (47), Expect = 2.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 24 QAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDKLGSPENAQTEL 71
Q P PPE + A K T ITP NL+ L + Q ++
Sbjct: 393 QNPSELPPENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKM 440
>ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 371
Score = 22.7 bits (47), Expect = 2.5
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 48 ITPKNDNSNLLDKLGSPENAQTELSAGIDL 77
+ PK D L +G+PEN +S G+D+
Sbjct: 235 LLPK-DKPRYLMGVGTPENILDAISLGVDM 263
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 22.3 bits (46), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 1/39 (2%)
Query: 44 SNTQITPKNDNSNLLDKLGSPENAQT-ELSAGIDLAKKG 81
S +I K NS+L+D L S E +T +L G+ G
Sbjct: 433 SKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSYG 471
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 22.3 bits (46), Expect = 3.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 83 YQGAFKLFSQSCDNGNAAGCFASGGDV 109
++GAF+L S + CF+ G D+
Sbjct: 75 FEGAFELISALKEKNYKVVCFSGGFDL 101
>ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobacter pylori J99]
Length = 434
Score = 21.6 bits (44), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 31 PELNPANAKGAPNSNTQITPKNDNSNLLDKLGS 63
PE N KG +S + +D+S L+ K G+
Sbjct: 199 PEFIEKNLKGDLSSCVLVVATSDDSPLMRKYGA 231
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 21.6 bits (44), Expect = 5.6
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 14 LQLSGAEENNQAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDKLGSPENAQTELSA 73
L+L ++ + TP +P+ + AP + T + + L+K E QT + +
Sbjct: 335 LKLKALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIEGREKLEKRERIETPQTPMLS 394
Query: 74 GID 76
D
Sbjct: 395 AKD 397
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 21.2 bits (43), Expect = 7.4
Identities = 12/53 (22%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
Query: 8 LLVFLVLQLSGAEENNQAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDK 60
L++ + + G + PKN P L KG +N + ++D +N + +
Sbjct: 21 LVLLIEIHSKGLHMQKKKPKNPQPNLFSILDKGDVATNNPV-EESDKANKIQE 72
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 20.8 bits (42), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 49 TPKNDNSNLLDKLGSPEN 66
+PK L DKLG P+N
Sbjct: 559 SPKQLGEVLYDKLGLPKN 576
>ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacter pylori J99]
Length = 407
Score = 20.8 bits (42), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 49 TPKNDNSNLLDKLGSPENAQ 68
T +DN +L+DKL ++ Q
Sbjct: 162 TKTSDNLSLIDKLADAKSVQ 181
>ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 453
Score = 20.8 bits (42), Expect = 9.6
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 31 PELNPANAKGAP 42
P LN A+AKG P
Sbjct: 38 PSLNGASAKGVP 49
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 20.8 bits (42), Expect = 9.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 42 PNSNTQITPKNDNSNLLDKLGSPENAQTELSAGID 76
PN I+ DN ++D L A EL +D
Sbjct: 469 PNKPAIISVSRDNQAIIDSLKEFVKAYNELIPKLD 503
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.309 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,192
Number of Sequences: 1491
Number of extensions: 5336
Number of successful extensions: 37
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 110
length of database: 494,079
effective HSP length: 66
effective length of query: 44
effective length of database: 395,673
effective search space: 17409612
effective search space used: 17409612
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 42 (20.8 bits)