BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644694|ref|NP_206864.1| hypothetical protein
[Helicobacter pylori 26695]
(139 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222781.1| putative [Helicobacter pylori J99] 232 3e-63
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 28 0.073
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 26 0.47
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 24 1.8
ref|NP_223725.1| putative outer membrane protein [Helicobac... 23 2.3
ref|NP_223590.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223588.1| putative outer membrane protein [Helicobac... 23 4.0
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 23 4.0
ref|NP_222924.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223139.1| putative [Helicobacter pylori J99] 22 5.2
ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori ... 22 6.8
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 22 6.8
ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacte... 22 6.8
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 22 8.9
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 22 8.9
>ref|NP_222781.1| putative [Helicobacter pylori J99]
Length = 139
Score = 232 bits (591), Expect = 3e-63
Identities = 113/139 (81%), Positives = 122/139 (87%)
Query: 1 METIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNK 60
M+ I +ELNWEFVE LNE ALS LEERL+IGFSDAFKDF+KRSNYGFSQ R F+VGN+
Sbjct: 1 MDRISTETELNWEFVESLNENALSDLEERLEIGFSDAFKDFIKRSNYGFSQLRYFMVGNE 60
Query: 61 SYTFKHVLNFNLEGLFIDFMQSLKEWLEPEEIIFANDGYGGYYLLNTATDVVLFLDTDDG 120
SY FKHVLNFNLE L IDFMQSLKEWLEPEEI+FANDGYGGYYL NT TDVVLFLDTD+G
Sbjct: 61 SYMFKHVLNFNLESLLIDFMQSLKEWLEPEEIVFANDGYGGYYLWNTTTDVVLFLDTDNG 120
Query: 121 SKHALLHLKMFLKKLESRG 139
SK LL+L MFLKKLESRG
Sbjct: 121 SKKVLLNLNMFLKKLESRG 139
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 28.5 bits (62), Expect = 0.073
Identities = 13/48 (27%), Positives = 24/48 (49%)
Query: 4 IPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQ 51
+ A +LNWEF+ +NE + + + D +++K+SN Q
Sbjct: 540 VVAYKKLNWEFIPQINEGVIMYMPVTINGVGIDTALEYLKKSNAAIKQ 587
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 25.8 bits (55), Expect = 0.47
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 7 NSELNWEFVEPLNEKALSG---LEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNKSYT 63
+SEL+ LN + LS + ++ ++ A KD K N GF ++++ S +
Sbjct: 59 SSELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKN------SKS 112
Query: 64 FKHVLNFNLEGLFI 77
K ++N +G FI
Sbjct: 113 AKQSFSWNNQGFFI 126
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 23.9 bits (50), Expect = 1.8
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 30 LKIGFSDAFKDFVKRSNYGFSQWRSFVVGNKSYTFKHVLNFNLEGLFIDFMQSLKEWLEP 89
LK+G+ F D++ S+YG ++ ++ N + ++ LF DF+ + P
Sbjct: 589 LKMGYQKYFNDYLGLSSYGIIKY-NYAQANNEKIQQLSYGVGMDVLF-DFITNYTNEKNP 646
Query: 90 -----EEIIFANDG--------YGGYYLLN 106
+++ ++ G Y YYLLN
Sbjct: 647 KSNLTKKVFTSSLGVFGGLRGLYNSYYLLN 676
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 23.5 bits (49), Expect = 2.3
Identities = 21/88 (23%), Positives = 39/88 (43%), Gaps = 13/88 (14%)
Query: 30 LKIGFSDAFKDFVKRSNYGFSQWRSFVVGNKSYTFKHVLNFNLEGLFIDFMQSL--KEWL 87
+KIG+ F D++ + YG Q+ ++ N + ++ LF DF+ + K+
Sbjct: 598 VKIGYQHYFNDYIGLAYYGIIQY-NYAQANDEKIQQLSYGGGMDVLF-DFITTYTNKKQD 655
Query: 88 EPEEIIFANDG---------YGGYYLLN 106
P + +FA+ Y YY+ N
Sbjct: 656 HPTKKVFASSFGVFGGLRGLYNSYYVFN 683
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 22.7 bits (47), Expect = 4.0
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 4 IPANSELNWEFVEPLNEKALSGLEERLK 31
I N L WE ++ EK + E+LK
Sbjct: 240 IDPNLRLEWENIKEFREKREEAIIEKLK 267
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 22.7 bits (47), Expect = 4.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 31 KIGFSDAFKDFVKRSNYGFSQW 52
KIG+ + F DF+ + YG ++
Sbjct: 514 KIGYQNYFNDFIGLAYYGIIKY 535
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 22.7 bits (47), Expect = 4.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 31 KIGFSDAFKDFVKRSNYGFSQW 52
KIG+ + F DF+ + YG ++
Sbjct: 503 KIGYQNYFNDFIGLAYYGIIKY 524
>ref|NP_222924.1| putative [Helicobacter pylori J99]
Length = 385
Score = 22.7 bits (47), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 111 VVLFLDTDDGSKHALLHLKMFLKKLES 137
V+ F D DDGSK +L F KK S
Sbjct: 170 VIGFNDCDDGSKEVVLE---FCKKFPS 193
>ref|NP_223139.1| putative [Helicobacter pylori J99]
Length = 162
Score = 22.3 bits (46), Expect = 5.2
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 84 KEWLEPEEIIFAN 96
KEWL+ +E +F+N
Sbjct: 137 KEWLDSKEALFSN 149
>ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 250
Score = 21.9 bits (45), Expect = 6.8
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 5 PANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQW 52
P + N F + EK E L GF D F+ F ++ W
Sbjct: 157 PKTNRKNAGFSDEEREK----FSELLNAGFIDTFRYFYPNKEKAYTWW 200
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 265
Score = 21.9 bits (45), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 18 LNEKALSGLEERLKIGFSDAFKDFVKRSN 46
L ++ L+ L+ LK DF+KR N
Sbjct: 154 LLDEPLNALDNALKNEVQQGLLDFIKREN 182
>ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 405
Score = 21.9 bits (45), Expect = 6.8
Identities = 9/41 (21%), Positives = 22/41 (52%)
Query: 78 DFMQSLKEWLEPEEIIFANDGYGGYYLLNTATDVVLFLDTD 118
+ ++LK ++P +I+F+ G + + +LFL+ +
Sbjct: 71 EIQRALKAGIKPYKIVFSGVGKSAFEIEQALKLNILFLNVE 111
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 21.6 bits (44), Expect = 8.9
Identities = 7/22 (31%), Positives = 13/22 (58%)
Query: 80 MQSLKEWLEPEEIIFANDGYGG 101
++ +KE L P E+++ D G
Sbjct: 197 LKEVKEVLNPHEVLYVADALSG 218
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 21.6 bits (44), Expect = 8.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 42 VKRSNYGFSQWRSFVVGNKSYTF 64
V Y ++ W + V GN Y F
Sbjct: 2730 VLNQRYNYNTWTTSVNGNYGYDF 2752
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,407
Number of Sequences: 1491
Number of extensions: 7910
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 15
length of query: 139
length of database: 494,079
effective HSP length: 69
effective length of query: 70
effective length of database: 391,200
effective search space: 27384000
effective search space used: 27384000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)