BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645254|ref|NP_207424.1| modulator of drug activity
(mda66) [Helicobacter pylori 26695]
(194 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223291.1| putative [Helicobacter pylori J99] 382 e-108
ref|NP_223015.1| putative [Helicobacter pylori J99] 26 0.80
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 24 2.3
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 24 2.3
ref|NP_222927.1| putative AMINOTRANSFERASE [Helicobacter py... 24 2.3
ref|NP_223960.1| putative [Helicobacter pylori J99] 23 5.2
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 23 5.2
ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicoba... 23 5.2
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 23 6.8
ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylo... 23 6.8
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 23 6.8
ref|NP_223605.1| putative [Helicobacter pylori J99] 23 6.8
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 8.9
ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANS... 22 8.9
>ref|NP_223291.1| putative [Helicobacter pylori J99]
Length = 194
Score = 382 bits (980), Expect = e-108
Identities = 184/194 (94%), Positives = 187/194 (95%)
Query: 1 MKKVLIINGAKAFGSSGGKLNETLTDHAKKTLESLGLEVDTTIVDKGYEHAQEVEKVFSA 60
MKKVLIINGAKAFG SGGKLNETLT HAKK LESLGLEVDTTIVDKGYE +QEVEK FSA
Sbjct: 1 MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESLGLEVDTTIVDKGYEKSQEVEKFFSA 60
Query: 61 DATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYM 120
DATIWQMPGWWMGEPWIVKKYIDEVF+ GHGKLYASDGRSSQNPTKNYGKGGLMQGKKYM
Sbjct: 61 DATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYM 120
Query: 121 LSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVVKNPQVEQY 180
LSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDV+KNPQVEQY
Sbjct: 121 LSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVMKNPQVEQY 180
Query: 181 LNSLTTHLRQAFGK 194
LNSLT HLRQAFGK
Sbjct: 181 LNSLTVHLRQAFGK 194
>ref|NP_223015.1| putative [Helicobacter pylori J99]
Length = 293
Score = 25.8 bits (55), Expect = 0.80
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 117 KKYMLSLTWNAP---IEAFNDPSEFFEGVGVDV 146
KKY L TW AP IE F +P + G +V
Sbjct: 51 KKYHLPATWFAPGHSIETFPEPMKMIVDAGHEV 83
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 24.3 bits (51), Expect = 2.3
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 164 PTFICNDVVKNPQVEQYL 181
P +C ++V NP+V+ YL
Sbjct: 56 PLTLCQNIVSNPKVKLYL 73
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 24.3 bits (51), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 18 GKLNETLTDHAKKTLESLGLEVDTTI 43
G+L+ TL D+ KK ++L E TT+
Sbjct: 468 GELSYTLKDYGKKADKALDREAKTTL 493
>ref|NP_222927.1| putative AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 387
Score = 24.3 bits (51), Expect = 2.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 113 LMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHK 153
L +GK ++++ P A F E +GV+V YL +++
Sbjct: 90 LKKGKNHIITTVAEHP--AVRSTCNFLESLGVEVTYLPINE 128
>ref|NP_223960.1| putative [Helicobacter pylori J99]
Length = 192
Score = 23.1 bits (48), Expect = 5.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 161 SALPTFICNDVVKNPQVEQYLNSLTTHL 188
SAL T +CN +VK QV+ N++ +HL
Sbjct: 99 SALLTKMCNRIVKALQVK---NNVISHL 123
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 23.1 bits (48), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 1 MKKVLIINGAKAFGSSGGKLN------ETLTDHAKKTLESLGLEV 39
+K+++ I G G S L +TL +HAKK G+E+
Sbjct: 629 LKQLVCITGVSGSGKSSLILQTLLPTAQTLLNHAKKNQSLNGVEI 673
>ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicobacter pylori J99]
Length = 167
Score = 23.1 bits (48), Expect = 5.2
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 41 TTIVDKGYEHAQEVEK---------VFSADATIWQMPGWWMGEPW----IVKKYIDEVFS 87
T I K YEH Q + + + S D + W++ E + K +D++
Sbjct: 84 TQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFLQWYVAEQHEEEVLFKDILDKIEL 143
Query: 88 VG---HGKLYASD 97
+G HG LY +D
Sbjct: 144 IGNENHG-LYLAD 155
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 22.7 bits (47), Expect = 6.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 125 WNAPIEAFNDPSEFFEGVGVD 145
W +PIEA N P++ V +
Sbjct: 554 WLSPIEAINSPNKEISSVATE 574
>ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 448
Score = 22.7 bits (47), Expect = 6.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 89 GHGKLYASDGRSSQ-NPTKNYGKGG 112
G K YA + S++ PT+NY KGG
Sbjct: 284 GRIKEYALEKTSAKYTPTENYPKGG 308
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 22.7 bits (47), Expect = 6.8
Identities = 18/78 (23%), Positives = 32/78 (40%), Gaps = 8/78 (10%)
Query: 47 GYEHAQEVEKVFSADATIWQMPGWWMGEPWIVKKYIDEVFSVGHGKLYASDGRSSQNPTK 106
G H + VE VF+A + + ++ K V S+ G Y + +++NP
Sbjct: 692 GIRHGEIVE-VFNARGRL-------LAGAFVTKNIRQGVLSIQEGAWYDPEDVNTRNPRC 743
Query: 107 NYGKGGLMQGKKYMLSLT 124
N G + + S+T
Sbjct: 744 NAGSVNTLTSSRPTSSMT 761
>ref|NP_223605.1| putative [Helicobacter pylori J99]
Length = 188
Score = 22.7 bits (47), Expect = 6.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 111 GGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVV-----YLHLHKAFQFLGLSALPT 165
G L+ K M S +AP F DP +E +GV + YL + +A LS +
Sbjct: 29 GILVSDLKGMKSELSDAPAWVFEDPKVPYEEMGVAYIPVNNKYLGIEQATLNAKLSLIVV 88
Query: 166 F 166
F
Sbjct: 89 F 89
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 22.3 bits (46), Expect = 8.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 37 LEVDTTIVDKGYEHAQEVEKV 57
L+ D I+D E QEV+K+
Sbjct: 882 LKTDVLIIDSSNERYQEVQKL 902
>ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 270
Score = 22.3 bits (46), Expect = 8.9
Identities = 12/36 (33%), Positives = 17/36 (46%)
Query: 14 GSSGGKLNETLTDHAKKTLESLGLEVDTTIVDKGYE 49
G KL +TLTD + +GL +D GY+
Sbjct: 122 GKEKAKLVKTLTDEGVIVVGHIGLMPQFVRLDGGYK 157
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,751
Number of Sequences: 1491
Number of extensions: 9075
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 14
length of query: 194
length of database: 494,079
effective HSP length: 73
effective length of query: 121
effective length of database: 385,236
effective search space: 46613556
effective search space used: 46613556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)