BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645258|ref|NP_207428.1| quinone-reactive Ni/Fe
hydrogenase (hydD) [Helicobacter pylori 26695]
(178 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223295.1| Hydrogenase expression/formation protein [... 346 2e-97
ref|NP_223149.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_223731.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 23 4.6
ref|NP_222921.1| putative transporter [Helicobacter pylori ... 23 6.0
ref|NP_224118.1| putative [Helicobacter pylori J99] 22 7.8
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 22 7.8
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 22 7.8
>ref|NP_223295.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 178
Score = 346 bits (888), Expect = 2e-97
Identities = 172/178 (96%), Positives = 178/178 (99%)
Query: 1 MSQKILILGIGNILFGDEGIGVHLAHYLKKNFSFFPSVDIIDGGTMAQQLIPLITSYEKV 60
MSQKILILGIGNILFGDEGIGVHLAHYLK+NFSFFPSVDI+DGGTMAQQLIPLITSYEKV
Sbjct: 1 MSQKILILGIGNILFGDEGIGVHLAHYLKRNFSFFPSVDIVDGGTMAQQLIPLITSYEKV 60
Query: 61 LILDCVSAEGVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGL 120
LILDCVSA+GVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGL
Sbjct: 61 LILDCVSAKGVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGL 120
Query: 121 VPFVIGSETTFKLSSKILNALETALKAIETQLNAWGVKMQRTDHIALECIAELSYKGF 178
VPFVIGSETTFKLSS++LNALETALKAIETQLNAWGVKMQRTDHIAL+CIAELSYKGF
Sbjct: 121 VPFVIGSETTFKLSSEMLNALETALKAIETQLNAWGVKMQRTDHIALDCIAELSYKGF 178
>ref|NP_223149.1| putative [Helicobacter pylori J99]
Length = 282
Score = 27.7 bits (60), Expect = 0.19
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 12 NILFGDEGIGVHLAHYLKKNFSFF 35
++ G + +HLA+YLKKN+ F
Sbjct: 218 DLYIGGDSFLIHLAYYLKKNYFIF 241
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 24.3 bits (51), Expect = 2.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 132 KLSSKILNALETALKAIETQLNAWGVKMQRTDHIALE 168
K K +LE+ ++I+ L+ W ++ T+H+ E
Sbjct: 132 KALEKFSKSLESEKESIQNSLHQWKKQLAETNHLNKE 168
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 23.1 bits (48), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 141 LETALKAIETQLNAWGVKMQRTDHI 165
LE ALK E NAW ++M++ I
Sbjct: 537 LENALKEQEDLKNAWLLEMEKQKEI 561
>ref|NP_222921.1| putative transporter [Helicobacter pylori J99]
Length = 548
Score = 22.7 bits (47), Expect = 6.0
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 148 IETQLNAWGVKMQRTDHIALECIAELSY 175
++T L +WG+K+ + D + ++ L +
Sbjct: 351 LDTILKSWGIKIDKIDSVIAMGVSALLF 378
>ref|NP_224118.1| putative [Helicobacter pylori J99]
Length = 399
Score = 22.3 bits (46), Expect = 7.8
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 7 ILGIGNILFGDEGIGVHLAHYLKKNFSFFPSVDIIDGGTMAQQLIPLITSYEKVLILDCV 66
ILG+ F ++AH + +F ++DI+D P T++ + L V
Sbjct: 134 ILGVLGAGFDPGVTNAYVAHAQRHHFDTIHTLDILDCNA-GDHKRPFATNFNPEINLREV 192
Query: 67 SAEG 70
S++G
Sbjct: 193 SSKG 196
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 22.3 bits (46), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 14 LFGDEGIGVHLAHYLKKNFSFFPSVDI 40
L DE I HLA+YL N S ++I
Sbjct: 204 LSADENIESHLAYYLICNHSLKTPLNI 230
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 22.3 bits (46), Expect = 7.8
Identities = 15/47 (31%), Positives = 22/47 (45%), Gaps = 1/47 (2%)
Query: 82 KDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGLVPFVIGSE 128
KDAP++ A V+ E +G++ KTFI F+ G E
Sbjct: 287 KDAPEDEELAKKYEYVDKKSKEYANEVVGEVTKTFI-DRPDFITGEE 332
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.140 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,448
Number of Sequences: 1491
Number of extensions: 7742
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 8
length of query: 178
length of database: 494,079
effective HSP length: 72
effective length of query: 106
effective length of database: 386,727
effective search space: 40993062
effective search space used: 40993062
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)