BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645260|ref|NP_207430.1| hypothetical protein
[Helicobacter pylori 26695]
(92 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223297.1| putative [Helicobacter pylori J99] 167 5e-44
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 0.056
ref|NP_223187.1| putative cag island protein [Helicobacter ... 25 0.21
ref|NP_223948.1| 30S RIBOSOMAL PROTEIN S17 [Helicobacter py... 25 0.36
ref|NP_223625.1| putative [Helicobacter pylori J99] 25 0.36
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 24 0.47
ref|NP_224090.1| putative [Helicobacter pylori J99] 24 0.62
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 24 0.62
ref|NP_223219.1| putative [Helicobacter pylori J99] 24 0.62
ref|NP_224041.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 23 1.0
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMIL... 23 1.4
ref|NP_223013.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 22 1.8
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 22 1.8
ref|NP_224003.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223438.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223331.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223180.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223790.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223578.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 21 4.0
ref|NP_223515.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 21 5.2
ref|NP_223088.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223055.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 20 6.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 20 6.8
ref|NP_224044.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223590.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 20 6.8
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 20 6.8
ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori... 20 8.9
ref|NP_223845.1| 50S RIBOSOMAL PROTEIN L33 [Helicobacter py... 20 8.9
ref|NP_223703.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 20 8.9
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 20 8.9
ref|NP_223039.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_222980.1| putative [Helicobacter pylori J99] 20 8.9
>ref|NP_223297.1| putative [Helicobacter pylori J99]
Length = 137
Score = 167 bits (422), Expect = 5e-44
Identities = 84/98 (85%), Positives = 87/98 (88%), Gaps = 6/98 (6%)
Query: 1 MRIVRNLFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNH------KNDKKLYDFT 54
MRIVRNLFLVSFVAYSS FA DLET TK++KKS KKFYK HKNH KNDKKLYDFT
Sbjct: 1 MRIVRNLFLVSFVAYSSAFAADLETGTKNDKKSGKKFYKLHKNHGSETETKNDKKLYDFT 60
Query: 55 KNSGLEGIDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG 92
KNSGLEG+DLEKSPNLKSHKKSDKKFYKQLAKNNIAEG
Sbjct: 61 KNSGLEGVDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG 98
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 27.3 bits (59), Expect = 0.056
Identities = 13/49 (26%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Query: 35 KKFYKFHKNHKNDKK---LYDFTKNSGLEGIDLEKSPNLKSHKKSDKKF 80
KK+Y+ K K+D K ++ ++ N +E ++ E + + KS + F
Sbjct: 427 KKYYQAFKEEKHDLKIATIFSYSANEEIEALEDENNESTAGLDKSSRDF 475
>ref|NP_223187.1| putative cag island protein [Helicobacter pylori J99]
Length = 115
Score = 25.4 bits (54), Expect = 0.21
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 25 TETKSEKKSSKKFYKFHKNHKNDKKLYD 52
TET E K F F KN+ DK+ YD
Sbjct: 8 TETTHETKKPNAFVNFFKNNLTDKR-YD 34
>ref|NP_223948.1| 30S RIBOSOMAL PROTEIN S17 [Helicobacter pylori J99]
Length = 86
Score = 24.6 bits (52), Expect = 0.36
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 2 RIVRNLFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNHKNDK-KLYDFTKNSGLE 60
R+V+ + F S+V + + + +K KKF K+ + +N++ K+ DF
Sbjct: 9 RLVQGKVISKFAEKSAVILVERKVVHEKYRKIVKKFKKYTIHDENNQVKVGDFVSAIECR 68
Query: 61 GIDLEKSPNLK 71
+ KS LK
Sbjct: 69 PLSKTKSFTLK 79
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 24.6 bits (52), Expect = 0.36
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 22 DLETETKSEKK--SSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKKSDKK 79
+ +T+ E K +S++ K + DK +Y NS + +P KS KK K
Sbjct: 261 EAQTQKSQEMKEAASEQAIKKPLEKEKDKPMYLAQINSA------DFAPAKKSPKKPAKA 314
Query: 80 FYKQLAKNNIA 90
K+ +KNNI+
Sbjct: 315 SPKRSSKNNIS 325
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 24.3 bits (51), Expect = 0.47
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 21 TDLETETKSEKKSSKKFYKFHKN 43
T+L TE +E + KK Y++++N
Sbjct: 188 TELNTELNTELNARKKQYQYYQN 210
Score = 23.9 bits (50), Expect = 0.62
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 9 LVSFVAYSSVFATDLETETKSEKKSSKKFYKFHK 42
+V+ + S TDL+ +E K+ KK Y++++
Sbjct: 404 IVTILDQFSALTTDLQAGIPAEIKARKKQYEYYR 437
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 23.9 bits (50), Expect = 0.62
Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 8/40 (20%)
Query: 55 KNSGLEGIDLEKSPNLK-------SHKKSDKKFYKQLAKN 87
K + L+GI K P+LK S KS K+F+KQL N
Sbjct: 20 KETPLKGIH-SKIPSLKQALEQTISKIKSSKEFFKQLLHN 58
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter pylori
J99]
Length = 207
Score = 23.9 bits (50), Expect = 0.62
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 9 LVSFVAYSSVFATDLETETKSEKKSSKKFYKFHK 42
+V+ + S TDL+ +E K+ KK Y++++
Sbjct: 156 IVTILDQFSALTTDLQAGIPAEIKARKKQYEYYR 189
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 23.9 bits (50), Expect = 0.62
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 45 KNDKKLYDFTKNSGLEGIDLEKSPNL-KSHKKSDKKFYKQLAKN 87
K D K F + + E LE +P L + HK+ DK+ + + +N
Sbjct: 186 KPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKEN 229
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 23.1 bits (48), Expect = 1.0
Identities = 18/65 (27%), Positives = 27/65 (40%), Gaps = 4/65 (6%)
Query: 26 ETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEK----SPNLKSHKKSDKKFY 81
ET S K + K NH K T+N E +D K + L +++ F+
Sbjct: 53 ETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDNNKVEGVTEILHVNERGTLGFH 112
Query: 82 KQLAK 86
K+L K
Sbjct: 113 KELKK 117
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 23.1 bits (48), Expect = 1.0
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 12 FVAYSSVFATDLETETKSEKKSSKKF-------YKFHKNHKNDKKLYDFTKNSGLEGIDL 64
F+A F +++++ + + K+S+ Y + + KN L + KN G D
Sbjct: 338 FLANWIKFMLNIDSDNQQDNKASQSIDKVIRDTYNYMGDQKNQINLLEIAKNLGSSEQDF 397
Query: 65 EKSPNLKSHKKSDKKFYKQLAKNN 88
+ + K K F L +N
Sbjct: 398 NEILKSQGEKIYFKNFQDCLDFSN 421
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 22.7 bits (47), Expect = 1.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 22 DLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGL 59
D E ETK KK +K DK+L D KNS L
Sbjct: 374 DFERETKGYSVLKKKEMLLNKLKHLDKRLLD--KNSHL 409
>ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
J99]
Length = 356
Score = 22.7 bits (47), Expect = 1.4
Identities = 20/81 (24%), Positives = 37/81 (44%), Gaps = 5/81 (6%)
Query: 7 LFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTK---NSGLEGID 63
L++ F+ Y ++ ++ K + K + +F+ N +L K N+GL GI+
Sbjct: 17 LWIGRFLRYKCTSLSN--SQVKDQNKVFECLNEFNHASINSNQLEKVCKKARNAGLLGIN 74
Query: 64 LEKSPNLKSHKKSDKKFYKQL 84
P LK ++ + K K L
Sbjct: 75 TYALPLLKFYEYAQKLSLKSL 95
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 8 FLVSFVAYSSVFAT-DLETETKSEKKSSKKFYKF 40
F+V+ +Y V DL + EK+ +KF KF
Sbjct: 41 FIVALSSYYGVKKRLDLRKQDSKEKEEKQKFQKF 74
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 22.3 bits (46), Expect = 1.8
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 20 ATDLETETK--------SEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLK 71
A L TETK SEK++ + K D L +F+ E +K NLK
Sbjct: 122 AHHLNTETKKKLNDSEASEKRNWESVVKLALEQNKDNLLLEFSATIPKEKSVEDKYENLK 181
Query: 72 SHKKSDKKFYKQLAKNNI 89
+ K+F + NI
Sbjct: 182 VVTYTLKQFSEDKFCKNI 199
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 22.3 bits (46), Expect = 1.8
Identities = 11/26 (42%), Positives = 13/26 (49%)
Query: 55 KNSGLEGIDLEKSPNLKSHKKSDKKF 80
K G+E DL SPN +K D F
Sbjct: 80 KELGVETKDLIGSPNFTKFEKKDTHF 105
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 21.9 bits (45), Expect = 2.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 31 KKSSKKFYKFHKNH 44
K+S K+FY F++ H
Sbjct: 70 KESKKEFYAFYQKH 83
>ref|NP_223438.1| putative [Helicobacter pylori J99]
Length = 175
Score = 21.9 bits (45), Expect = 2.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 63 DLEKSPNLKSHKKSD 77
D E +PNLK H+ S+
Sbjct: 87 DKENNPNLKDHQGSE 101
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 21.9 bits (45), Expect = 2.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 72 SHKKSDKKFYKQLAKNNIAE 91
SH K +K+ Y+ KN+ A+
Sbjct: 596 SHPKLEKRVYETYGKNSTAQ 615
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 21.9 bits (45), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Query: 24 ETETKSEKKSSK-KFYKFHKNHKNDKKLYDFT 54
E + K EKK K K K K +KK+YD +
Sbjct: 555 EYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLS 586
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 65 EKSPNLKSHKKSDKKFYKQ 83
E P +KS+KK + + YK+
Sbjct: 91 EVEPRIKSNKKEELEEYKE 109
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 21.6 bits (44), Expect = 3.1
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 18 VFATDLETETKSEKKSSKKFYKFHKNHK---NDKKLYDFTKNSGLEGIDLEKSPNLKSHK 74
+F +T EK SKK +N K N+ L T+ E D S +K
Sbjct: 109 IFTLGKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYK 168
Query: 75 KSDKKF 80
K++++F
Sbjct: 169 KNEEEF 174
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 34 SKKFYKFHKNHKNDKKL 50
S++F KF+ NHK K+
Sbjct: 167 SQRFGKFNDNHKEGLKI 183
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 28 KSEKKSSKKFYK 39
K EKKS KK YK
Sbjct: 481 KKEKKSLKKVYK 492
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 21.2 bits (43), Expect = 4.0
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 46 NDKKLYDFTKNSGLEGIDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG 92
N+ KLY K + +DL + +K +K + N + +G
Sbjct: 324 NNNKLYSLEKRGYVIEVDLNDFDSYNVYKTPTIGSFKFFSSNRLDKG 370
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 23 LETETKSEKKSSKKFYKFHKNHKNDKKL 50
LE K +K+ + ++K +N K+ K +
Sbjct: 664 LEKHFKDDKRMALVYFKLLENEKDPKSV 691
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 20.8 bits (42), Expect = 5.2
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 18/65 (27%)
Query: 26 ETKSEKKSSKKFYK---FHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKKSDKKFYK 82
E K E + +KK + + HK ++LY L+G + H+K++ ++
Sbjct: 61 ELKEENEVAKKIDEKSLLEEIHKKKRQLYM------LKG---------ELHEKNESILFQ 105
Query: 83 QLAKN 87
Q+AKN
Sbjct: 106 QMAKN 110
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/21 (42%), Positives = 11/21 (51%)
Query: 68 PNLKSHKKSDKKFYKQLAKNN 88
P L K K +Y QL KN+
Sbjct: 451 PTLLDKKNLQKHYYYQLFKNS 471
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 42 KNHKNDKKLYDFTKNSG 58
+N + DK +YD T SG
Sbjct: 178 ENTRQDKSIYDPTCGSG 194
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 51 YDFTKNSGLEGIDLEKSPNLKSH 73
Y S + ID+EK P K+H
Sbjct: 1057 YTSNLKSKIPPIDIEKYPATKAH 1079
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 20.4 bits (41), Expect = 6.8
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 33 SSKKFYKFHKNHKNDKKLYDFTKNSGLEGID-----LEKSPNLKSHKKSDKKFYKQLAKN 87
+ ++ Y+++ H D + N+ L I K L S K+ ++YKQL N
Sbjct: 711 AGREIYRYY--HTQDFIHTPYNANASLYDIKEFFQGRNKQGRLNSPTKAKDEYYKQLYAN 768
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 66 KSPNLKSHKKSDKKFYK 82
KS K +KK DK FY+
Sbjct: 176 KSKFKKENKKLDKDFYE 192
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 23 LETETKSEKKSSKKFYKFHKNHKNDKKLYDF 53
+ET T+ + K F++F N K L +
Sbjct: 328 IETFTELNDHNKKSFFEFLNTRLNKKFLIQY 358
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 20.4 bits (41), Expect = 6.8
Identities = 10/34 (29%), Positives = 17/34 (49%)
Query: 3 IVRNLFLVSFVAYSSVFATDLETETKSEKKSSKK 36
+ R + V Y + DLE + K EK++ +K
Sbjct: 62 VFRKQKIKELVDYRAKVLLDLENKYKKEKEALEK 95
>ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 220
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 41 HKNHKNDKKLYDFTKNSG 58
HK N KK+ +T N G
Sbjct: 102 HKGEDNRKKIDSYTINLG 119
>ref|NP_223845.1| 50S RIBOSOMAL PROTEIN L33 [Helicobacter pylori J99]
Length = 52
Score = 20.0 bits (40), Expect = 8.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 19 FATDLETETKSEKKSSKKFYKFHKNHKNDKKL 50
++T +T +EK KKF H K++
Sbjct: 17 YSTTKNAKTNTEKLELKKFCPRENKHTLHKEI 48
>ref|NP_223703.1| putative [Helicobacter pylori J99]
Length = 222
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 39 KFHKNHKNDKKLYDFTKNSGL 59
K K+ KKL+D KN+ +
Sbjct: 173 KIEKSFTTTKKLFDQIKNASV 193
>ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 381
Score = 20.0 bits (40), Expect = 8.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 34 SKKFYKFHKNHKNDKKLYDFTKNSGL 59
+KK +F K H +K L K+S L
Sbjct: 112 TKKVLEFQKKHPLEKPLKKAPKHSFL 137
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 20.0 bits (40), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 20 ATDLETETKSEKKSSKKFYKFHKNHKNDKK 49
AT ETK E K KK K + ++KK
Sbjct: 34 ATKETKETKKEAKRLKKEAKQRQQIPDNKK 63
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 20.0 bits (40), Expect = 8.9
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 42 KNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKKSDKKFYKQLAKNNIAE 91
KN N K +F K S + + K HK+ + +NI E
Sbjct: 119 KNRSNRKDAKNFEKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNITE 168
>ref|NP_222980.1| putative [Helicobacter pylori J99]
Length = 132
Score = 20.0 bits (40), Expect = 8.9
Identities = 12/28 (42%), Positives = 14/28 (49%)
Query: 23 LETETKSEKKSSKKFYKFHKNHKNDKKL 50
LE E S+K K YKF K+ K L
Sbjct: 44 LELEEFSQKYVKKVGYKFSLLEKDAKDL 71
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.129 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,506
Number of Sequences: 1491
Number of extensions: 5214
Number of successful extensions: 46
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of query: 92
length of database: 494,079
effective HSP length: 68
effective length of query: 24
effective length of database: 392,691
effective search space: 9424584
effective search space used: 9424584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 40 (20.0 bits)