BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645261|ref|NP_207431.1| hypothetical protein
[Helicobacter pylori 26695]
(150 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223298.1| putative [Helicobacter pylori J99] 306 2e-85
ref|NP_222796.1| putative [Helicobacter pylori J99] 34 0.002
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 25 0.70
ref|NP_222784.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 25 0.91
ref|NP_223773.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223750.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_223009.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_223765.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 23 3.5
ref|NP_223891.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_222877.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 22 5.9
ref|NP_222990.1| putative [Helicobacter pylori J99] 22 5.9
ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter py... 22 7.7
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 22 7.7
>ref|NP_223298.1| putative [Helicobacter pylori J99]
Length = 150
Score = 306 bits (783), Expect = 2e-85
Identities = 142/150 (94%), Positives = 146/150 (96%)
Query: 1 MHQNNKTFLPSQSAHLSKIILFLNTGFLAYLLSACGANVPIEEVLVKDPKETKAQEVARE 60
MHQNNKTFLP+QSAHLSKI+LFLNTG LAYLLSACGANVPIEEV+VKDPKETKAQEVARE
Sbjct: 1 MHQNNKTFLPNQSAHLSKIVLFLNTGLLAYLLSACGANVPIEEVIVKDPKETKAQEVARE 60
Query: 61 EKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM 120
E AIQQENA ID RTTPLINRFTNY+AYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM
Sbjct: 61 ENAIQQENAIIDVRTTPLINRFTNYNAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM 120
Query: 121 PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150
PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY
Sbjct: 121 PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 33.9 bits (76), Expect = 0.002
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 107 NGMYGGYYMPYYYMPYGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150
N Y YY PYY M YG YG G+ YG YG G Y Y FY
Sbjct: 167 NNYYNSYYSPYYGM-YGM--YGMGM--YGMYGMGM--YDFYDFY 203
Score = 22.3 bits (46), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (40%), Gaps = 10/51 (19%)
Query: 86 SAYGSLNGFYNSVDNLNSPMQN----GMYGGY------YMPYYYMPYGFMP 126
S Y N +YNS + M GMYG Y + +Y YGF P
Sbjct: 161 SPYYRSNNYYNSYYSPYYGMYGMYGMGMYGMYGMGMYDFYDFYDGMYGFYP 211
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 25.4 bits (54), Expect = 0.70
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 82 FTNYSAYGSLNGFYNSVDNLNSPMQNGMYG 111
FTN+S G+LN N V N+N M N G
Sbjct: 2148 FTNHS--GTLNLLSNQVSNINVTMLNASNG 2175
>ref|NP_222784.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 265
Score = 25.0 bits (53), Expect = 0.91
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 9 LPSQSAHL--SKIILFLNTGFLAYLLSACGANVPIEEVLVKDPKETKAQEVAREEKAIQQ 66
+P ++AH + I ++ L Y V E+ + TK + ++EK I
Sbjct: 115 IPFENAHFKGNTTISLRSSSQLLYSEIIVAGRVARNELFKFNRLHTKIS-ILQDEKPIYY 173
Query: 67 ENATIDARTTPLIN--RFTNYSAYGSL 91
+N +D +TT + N F Y+ Y +L
Sbjct: 174 DNTILDPKTTNMNNMCMFDGYTHYLNL 200
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 24.3 bits (51), Expect = 1.6
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 16 LSKIILFLNTGFLAYLLSAC--------GANVPIEEVLVK-DPKETKAQEVAREEKAIQQ 66
+SK +F+ +GFLA+LL A N E++L+ + K+ +A ++ E+ ++
Sbjct: 1 MSKSAIFVLSGFLAFLLYALLLYGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEK 60
Query: 67 ENATIDART 75
+N I+ T
Sbjct: 61 KNEKIEKVT 69
>ref|NP_223750.1| putative [Helicobacter pylori J99]
Length = 435
Score = 23.9 bits (50), Expect = 2.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 109 MYGGYYMPYYYMPYGFMPYGSGLMPYGPY 137
M+G +++ + Y + PY G+ Y Y
Sbjct: 74 MFGAWFIQNLHTHYSYFPYSWGVTMYYQY 102
>ref|NP_223009.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.9 bits (50), Expect = 2.0
Identities = 12/31 (38%), Positives = 15/31 (47%), Gaps = 10/31 (32%)
Query: 95 YNSVDNLNSPMQNGMYGGYYMPYYYMPYGFM 125
Y S DN+N +YMPY M Y F+
Sbjct: 119 YQSEDNIN----------FYMPYMNMAYWFV 139
>ref|NP_223765.1| putative [Helicobacter pylori J99]
Length = 144
Score = 23.5 bits (49), Expect = 2.7
Identities = 15/53 (28%), Positives = 24/53 (44%), Gaps = 7/53 (13%)
Query: 39 VPIEEVLVKDPKETKAQEVAREE-------KAIQQENATIDARTTPLINRFTN 84
+ + E ++D K K E+ +A +QE IDA+ L N+F N
Sbjct: 19 IDLTERDIRDIKLAKHAEIFERNHQKQLAIQAFEQEKTNIDAQMLSLKNQFPN 71
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 23.1 bits (48), Expect = 3.5
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 25 TGFLAYLLSACGANVPIEEVLVKDPKETKAQEVAREEKAIQ 65
T LAYL+ ACG VP E L ++E+ +E+A++
Sbjct: 41 TSRLAYLIGACG--VPSENTLTLTFTNKASKEM--QERALK 77
>ref|NP_223891.1| putative [Helicobacter pylori J99]
Length = 595
Score = 23.1 bits (48), Expect = 3.5
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 109 MYGGYYMPYYYMP-YGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150
++G Y +P++Y+P Y Y MP Y G+ PY ++
Sbjct: 548 LWGFYVIPHFYLPNYRIAAYNYIGMPEISPSY---GFSPYLWW 587
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 22.7 bits (47), Expect = 4.5
Identities = 12/46 (26%), Positives = 23/46 (49%)
Query: 32 LSACGANVPIEEVLVKDPKETKAQEVAREEKAIQQENATIDARTTP 77
L A A +E ++PKE+K E+ +++E+A + +P
Sbjct: 18 LEALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKYGKISP 63
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 22.3 bits (46), Expect = 5.9
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 3/35 (8%)
Query: 41 IEEVLVKDPKETKAQEVARE---EKAIQQENATID 72
+EE ++PKE +E A+E EK++ ++ T D
Sbjct: 125 VEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKD 159
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 22.3 bits (46), Expect = 5.9
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 53 KAQEVAREEKAIQQENATIDARTTP----LINRFTNYSAYGSL 91
+A++ ++E +IQ++ A +D + + +F NY Y +
Sbjct: 15 QAEDKSQELSSIQKQMALVDKKLAKDDNVWLKKFENYKIYNQI 57
>ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter pylori J99]
Length = 266
Score = 21.9 bits (45), Expect = 7.7
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 87 AYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYMPYGFMPYGSGLMPY 134
AYG L F + L P Q+G M Y F + +PY
Sbjct: 212 AYGFLTPFLSLAKELKIPFQDGK----DMLIYQASLSFEKFSDSQIPY 255
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 21.9 bits (45), Expect = 7.7
Identities = 22/85 (25%), Positives = 35/85 (40%), Gaps = 11/85 (12%)
Query: 62 KAIQQENATIDA--RTTPLINRFTNYSAYGSLNGFYNSVDN-----LNSPMQNGMYGGYY 114
KAI+ ++A + + NRF + G G +N + L G +
Sbjct: 68 KAIRDVQNALNAVKDSNKIANRF---AGNGGSGGIFNELSLGYKYFLGKKRIIGFRHSLF 124
Query: 115 MPYYYMPYGFMPYGSGLMPYGPYGY 139
Y G +P GSGL+ + PYG+
Sbjct: 125 FGYQLGGVGSVP-GSGLIAFLPYGF 148
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,799
Number of Sequences: 1491
Number of extensions: 9280
Number of successful extensions: 41
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 19
length of query: 150
length of database: 494,079
effective HSP length: 70
effective length of query: 80
effective length of database: 389,709
effective search space: 31176720
effective search space used: 31176720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)