BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644695|ref|NP_206865.1| hypothetical protein
[Helicobacter pylori 26695]
(117 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222782.1| putative [Helicobacter pylori J99] 167 7e-44
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 34 0.001
ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 30 0.014
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 26 0.34
ref|NP_222847.1| putative [Helicobacter pylori J99] 26 0.34
ref|NP_223317.1| putative [Helicobacter pylori J99] 25 0.44
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 25 0.58
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 25 0.75
ref|NP_223265.1| putative secretion/efflux abc transporter,... 25 0.75
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 24 0.99
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 24 1.3
ref|NP_223084.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 1.7
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223766.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223653.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_224063.1| putative thiophene/furan oxidation protein... 23 2.2
ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Heli... 23 2.2
ref|NP_223304.1| putative Oxidoreductase [Helicobacter pylo... 23 2.9
ref|NP_223790.1| putative [Helicobacter pylori J99] 22 3.7
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 22 3.7
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 22 3.7
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 22 3.7
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 22 4.9
ref|NP_222738.1| putative [Helicobacter pylori J99] 22 4.9
ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99] 22 6.4
ref|NP_223860.1| putative [Helicobacter pylori J99] 21 8.3
ref|NP_222941.1| putative [Helicobacter pylori J99] 21 8.3
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 167 bits (423), Expect = 7e-44
Identities = 84/118 (71%), Positives = 100/118 (84%), Gaps = 3/118 (2%)
Query: 1 MFSHEVYLEGCTLELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQ 60
+FSH+V+LEGCT ELR+ICD F + AMQDDLGQKL+S+ LE+MLKIAHDLENLE +TQY+
Sbjct: 2 LFSHKVFLEGCTNELRRICDSFVEGAMQDDLGQKLKSEALENMLKIAHDLENLEQETQYE 61
Query: 61 RRIIDEQIEEAKSLMRQIDM-NFHPSSEIDRLMREAKEHEREASKRYDEYLKSKDKND 117
R I+EQ+EEAK L +Q+DM + H SEIDRLMREAKEHEREA +RY EYL KDKND
Sbjct: 62 MRKINEQLEEAKRLEKQVDMQDRHSQSEIDRLMREAKEHEREAKRRYGEYL--KDKND 117
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 33.9 bits (76), Expect = 0.001
Identities = 29/112 (25%), Positives = 51/112 (44%), Gaps = 11/112 (9%)
Query: 15 LRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLE--NLEDDTQYQRRIIDEQIEEAK 72
L+++C+ FEK +++DL L D+ +K+ +E + D Y +R+ E E
Sbjct: 483 LKRLCEYFEKGGLEEDL-LTLARDIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELN 541
Query: 73 SLMRQI------DMNFHPSSEIDRLMREAKEHEREASKRYDE--YLKSKDKN 116
L RQI D N + ++ ++ + + S DE LK DK+
Sbjct: 542 VLERQILDLIGVDFNLNSPKQLGEVLYDKLGLPKNKSHSTDEKNLLKILDKH 593
>ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 30.4 bits (67), Expect = 0.014
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 33 QKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSLMRQIDMNFHPSSEI-DRL 91
++L +LE+ +KI N+ + QR + + E A+++MR +D S + R
Sbjct: 207 KRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTRT 266
Query: 92 MREAKE-HEREASKRY 106
+EA E H+ ASK Y
Sbjct: 267 KKEADELHQFLASKNY 282
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 25.8 bits (55), Expect = 0.34
Identities = 27/94 (28%), Positives = 41/94 (42%), Gaps = 11/94 (11%)
Query: 27 MQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSLMRQIDMNF-HPS 85
MQDDL VLE ML + E L D + + E + K + + + F PS
Sbjct: 348 MQDDLNVSKALSVLESMLSSTN--EKL-DQNPKNKALKGEILANLKFIEELLGIGFKDPS 404
Query: 86 -------SEIDRLMREAKEHEREASKRYDEYLKS 112
SE ++ E K ER+ +K ++LK+
Sbjct: 405 AYFQLGVSESEKQEIENKIEERKRAKEQKDFLKA 438
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 25.8 bits (55), Expect = 0.34
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 50 LENLEDDTQYQRRIID--------EQIEEAKSLMRQIDMNFHPS--SEIDRLMREAKEHE 99
+E D +Y+ I D E + A +R N + SE + L KE +
Sbjct: 1 MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK 60
Query: 100 REASKRYDEYLKSKDKN 116
+ R DEYL+ +KN
Sbjct: 61 LKILSRLDEYLELFEKN 77
>ref|NP_223317.1| putative [Helicobacter pylori J99]
Length = 360
Score = 25.4 bits (54), Expect = 0.44
Identities = 10/36 (27%), Positives = 20/36 (54%)
Query: 59 YQRRIIDEQIEEAKSLMRQIDMNFHPSSEIDRLMRE 94
+ +++D Q+ E+K L+R D + + E MR+
Sbjct: 3 FLEKVLDNQVTESKELVRLYDYDLYTLGEAADRMRQ 38
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 25.0 bits (53), Expect = 0.58
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 25 NAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSLMRQI 78
+A +DL + ++ D + D + H + +ED ++ + ID+ E + + +I
Sbjct: 372 HAEANDLVKAVQEDHVTDSKYLEHKVHLMEDSAKHVKENIDKMFYEKQDELNKI 425
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 24.6 bits (52), Expect = 0.75
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 2 FSHEVYLEGCTLELRKICDDFEKNAMQDDLGQKL 35
+ E YL G ++EL F+ N DD G KL
Sbjct: 254 YGDENYLGGSSVELGVKVPAFKVNYYSDDYGDKL 287
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 24.6 bits (52), Expect = 0.75
Identities = 8/31 (25%), Positives = 19/31 (60%)
Query: 52 NLEDDTQYQRRIIDEQIEEAKSLMRQIDMNF 82
+++D+ Q I EQ+++ + +++ D NF
Sbjct: 438 SIDDNLFMQNNITKEQLKQKREILKSFDENF 468
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 24.3 bits (51), Expect = 0.99
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 13 LELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDE 66
LE +K+ EK + D + L DVLE+ KI H LE++ ++ + + E
Sbjct: 212 LEQKKLLSSKEK--LNDKIALAL--DVLENTHKITHALESVGHSAEFLKSALLE 261
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 23.9 bits (50), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 89 DRLMREAKEHEREASKRYDEYLKSKDKND 117
+R++ + K +E E KR D YL+++ K D
Sbjct: 222 NRMVLKNKGNEYEKGKRGDLYLEARVKED 250
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 23.9 bits (50), Expect = 1.3
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 12 TLELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIA-HDLENLEDDTQ-YQRRI------ 63
TLE +K+ + N ++ G K+ LED A +++++++D Q Y+R +
Sbjct: 63 TLEYQKLFE----NKVESLKGVKIEE--LEDAKVTAENEIKSIQDLMQDYKRSLETNTIP 116
Query: 64 --IDEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEHERE 101
++E++ ++L +++ + P AKEH++E
Sbjct: 117 NHLNEEVSNEEALNKEVSSDESPKEVQLTTDNNAKEHDKE 156
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.5 bits (49), Expect = 1.7
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 45 KIAHDLENLEDDTQYQRRIIDEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKE-HEREAS 103
K +LE LE+ + ++DE IEE + D S + + ++ A + +++
Sbjct: 648 KETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLEDKQIL 707
Query: 104 KRYDEYLKSKDK 115
K E+L++K+K
Sbjct: 708 KTALEWLEAKNK 719
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 23.5 bits (49), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 34 KLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIE 69
K SD LE++LKI L+ D + + IDE ++
Sbjct: 832 KSESDFLEELLKITETLQENYDFWAFSK--IDEHLD 865
>ref|NP_223766.1| putative [Helicobacter pylori J99]
Length = 250
Score = 23.5 bits (49), Expect = 1.7
Identities = 9/35 (25%), Positives = 21/35 (59%)
Query: 80 MNFHPSSEIDRLMREAKEHEREASKRYDEYLKSKD 114
MN H SS + + +E+E ++++++Y+ +D
Sbjct: 1 MNNHTSSFGSFIAKNGFLNEKEVAQKFNDYIHDRD 35
>ref|NP_223653.1| putative [Helicobacter pylori J99]
Length = 177
Score = 23.5 bits (49), Expect = 1.7
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 9/70 (12%)
Query: 42 DMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEHERE 101
D LK+AH +EN + ID E +S + ++ N+ + E + +M K + +
Sbjct: 96 DDLKLAHIIENKVIN-------IDTMAEFLESSLEKLKDNYTSTQEKENIM--DKLEQID 146
Query: 102 ASKRYDEYLK 111
+ K ++E LK
Sbjct: 147 SIKPFNERLK 156
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 23.1 bits (48), Expect = 2.2
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 28 QDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDEQIEEAKSLMRQID 79
++DL KL ++L+ LKI + + LE +T + + + ++ ++D
Sbjct: 341 KNDLAPKLELEILKSYLKIPYSI--LETNTLNSKACLKDLSQKISEFFPKLD 390
>ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Helicobacter pylori J99]
Length = 152
Score = 23.1 bits (48), Expect = 2.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 3 SHEVYLEGCTLELRKICDDFEKNA 26
SH+ ++ C+L + +CD+ +K A
Sbjct: 77 SHQKFISQCSLNVILLCDEDKKVA 100
>ref|NP_223304.1| putative Oxidoreductase [Helicobacter pylori J99]
Length = 217
Score = 22.7 bits (47), Expect = 2.9
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 88 IDRLMREAKEHEREASKRYDEYLKSKDKN 116
+DR A +H+R A+K+YD + +K+
Sbjct: 1 MDREQIIALQHQRFATKKYDPNRRISEKD 29
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 22.3 bits (46), Expect = 3.7
Identities = 10/39 (25%), Positives = 20/39 (50%)
Query: 68 IEEAKSLMRQIDMNFHPSSEIDRLMREAKEHEREASKRY 106
I+E +++ + NF+ ++ L+R E E E + Y
Sbjct: 44 IQETDERLKESNFNFNNPEQLLALIRSFLEPEEELKRIY 82
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 22.3 bits (46), Expect = 3.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 30 DLGQKLRSDVLEDMLKIAHDLENLEDDTQYQRRIIDE 66
D+ +K+R+ +LE +LK+ D N + RI ++
Sbjct: 87 DIVKKIRNAMLESLLKMEMDFFNRTKKGELIARITND 123
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 22.3 bits (46), Expect = 3.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 65 DEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEH 98
+EQ E +++ D +F EID ++++ EH
Sbjct: 167 EEQGTEITLFLKEEDSHFASRWEIDSVVKKYSEH 200
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 22.3 bits (46), Expect = 3.7
Identities = 9/34 (26%), Positives = 14/34 (40%)
Query: 81 NFHPSSEIDRLMREAKEHEREASKRYDEYLKSKD 114
+F + E + R+ Y+ YLK KD
Sbjct: 170 DFSSPKSLKHFQTEREREPRQKFSLYEHYLKEKD 203
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 21.9 bits (45), Expect = 4.9
Identities = 10/36 (27%), Positives = 22/36 (60%)
Query: 66 EQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEHERE 101
E I EA++++ +D + + EI+RL+++ E +
Sbjct: 553 EDICEAQTILDVLDDLDYDTKEIERLLKQKIEDNNQ 588
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 21.9 bits (45), Expect = 4.9
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 60 QRRIIDEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEHEREASKRYDEY 109
QRR + EE + +++ID + + ++R E E D+Y
Sbjct: 150 QRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDKY 199
>ref|NP_223266.1| FLAGELLIN A [Helicobacter pylori J99]
Length = 510
Score = 21.6 bits (44), Expect = 6.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 26 AMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQY 59
A QD + R + D++++ L+N+ + T Y
Sbjct: 99 AAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTY 132
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 21.2 bits (43), Expect = 8.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 84 PSSEIDRLMREAKEHEREASKRY 106
P SE+D LM+ K++ ++ Y
Sbjct: 65 PKSEVDFLMKMLKKYLKDERSTY 87
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 21.2 bits (43), Expect = 8.3
Identities = 6/19 (31%), Positives = 13/19 (67%)
Query: 6 VYLEGCTLELRKICDDFEK 24
+Y +GC L +++ C++ K
Sbjct: 333 IYDKGCKLGMKQACENLTK 351
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,759
Number of Sequences: 1491
Number of extensions: 4938
Number of successful extensions: 32
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 29
length of query: 117
length of database: 494,079
effective HSP length: 67
effective length of query: 50
effective length of database: 394,182
effective search space: 19709100
effective search space used: 19709100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 43 (21.2 bits)