BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645265|ref|NP_207435.1| hypothetical protein
[Helicobacter pylori 26695]
(75 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223302.1| putative [Helicobacter pylori J99] 80 6e-18
ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Heli... 71 4e-15
ref|NP_223014.1| putative [Helicobacter pylori J99] 26 0.13
ref|NP_224126.1| putative [Helicobacter pylori J99] 25 0.23
ref|NP_223185.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223965.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 23 1.5
ref|NP_223482.1| THIOREDOXIN REDUCTASE [Helicobacter pylori... 22 1.9
ref|NP_223387.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_224149.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223466.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 20 7.2
>ref|NP_223302.1| putative [Helicobacter pylori J99]
Length = 167
Score = 80.5 bits (197), Expect = 6e-18
Identities = 37/40 (92%), Positives = 38/40 (94%)
Query: 1 MITMNAIQWPKKWILGETDNFVSNEVIVKGLDFNKVVQHL 40
M TMNAI+WPKKWI GETDNFVSNEVIVKGLDFNKVVQHL
Sbjct: 1 MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHL 40
>ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter pylori J99]
Length = 285
Score = 71.2 bits (173), Expect = 4e-15
Identities = 33/36 (91%), Positives = 35/36 (96%)
Query: 40 LPFLFKAQELYSQAEKSGLGELDMAAVYHYLEKGEH 75
LPFLF+A+ELYSQAEKSGLG LDMAAVYHYLEKGEH
Sbjct: 250 LPFLFQAEELYSQAEKSGLGGLDMAAVYHYLEKGEH 285
>ref|NP_223014.1| putative [Helicobacter pylori J99]
Length = 294
Score = 26.2 bits (56), Expect = 0.13
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 6/41 (14%)
Query: 24 NEVIVKGLDFNKVV---QHLPFLFKAQELYSQAEKSGLGEL 61
NEVI+ +D N+V Q +P+L Q+ ++ K G G+L
Sbjct: 256 NEVIIAEMDLNEVALQRQKIPYL---QDFDTKLTKKGFGKL 293
>ref|NP_224126.1| putative [Helicobacter pylori J99]
Length = 227
Score = 25.4 bits (54), Expect = 0.23
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 16 GETDNFVSNEVIVKGLDFNKVVQHLPFLFKA 46
G+T+N + + ++V G++ NK+ L L K+
Sbjct: 185 GKTENILMDRILVIGIEPNKITLFLDDLIKS 215
>ref|NP_223185.1| putative [Helicobacter pylori J99]
Length = 330
Score = 23.1 bits (48), Expect = 1.1
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 1 MITMNAIQWPKKWILGETDNFV----SNEVIVKGLDFNKVVQHLPFLFKAQE 48
MI + QW + W G+ + ++ N G+ FN ++ +F E
Sbjct: 215 MILSSLFQWKEAWARGDFERYMRFYNPNFTRYDGMSFNAFKEYKKRVFAKNE 266
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 22.7 bits (47), Expect = 1.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 45 KAQELYSQAEKSGLGELDMAAVYHYLEK 72
KAQ+ + A+KS L ++++ VY++ K
Sbjct: 255 KAQKDITLAKKSFLEDINVTGVYYFRSK 282
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 22.7 bits (47), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 46 AQELYSQAEKSGLGELDMAAVYHYLEKG 73
AQE SG G+ D++ VY+ L+ G
Sbjct: 364 AQEKIIVVNLSGRGDKDLSTVYNALKGG 391
>ref|NP_223482.1| THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 311
Score = 22.3 bits (46), Expect = 1.9
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 17 ETDNFVSNEVIVKGLDFNKVVQHLPFLFKAQELYSQAEKSGLGELDMAAVYHYLEKGEH 75
E +N+ + +V GLDF + Q F F + +M A+ +KG H
Sbjct: 45 EIENYPGVKEVVSGLDFMQPWQEQCFRFGLKH-------------EMTAIQRVSKKGSH 90
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 22.3 bits (46), Expect = 1.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 24 NEVIVKGLDFNKVVQHLPFLFKAQELYSQAEKSGLGE 60
++ ++ G DF+K Q FKA EL Q+ L E
Sbjct: 25 SQALIPGTDFDKKKQKFLKDFKAGELLYQSHFKPLVE 61
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 21.9 bits (45), Expect = 2.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 26 VIVKGLDFNKVVQHLPFLFKAQELYSQAEKS 56
++ + LD++K+ Q + +LY Q +KS
Sbjct: 115 IVKEYLDYHKITQDFKKNLQDSKLYEQHKKS 145
>ref|NP_223466.1| putative [Helicobacter pylori J99]
Length = 336
Score = 20.8 bits (42), Expect = 5.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 29 KGLDFNKVVQHLPFLFKAQEL 49
+ LDF ++ HL L++ +L
Sbjct: 234 QALDFKDILNHLASLYQQSDL 254
>ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 20.4 bits (41), Expect = 7.2
Identities = 11/41 (26%), Positives = 21/41 (50%)
Query: 14 ILGETDNFVSNEVIVKGLDFNKVVQHLPFLFKAQELYSQAE 54
I+G T N+VI L++ V + ++ QE+ ++ E
Sbjct: 40 IVGRTFKKAVNKVISNDLEYYSFVLNQNYIGNIQEIPNKEE 80
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,711
Number of Sequences: 1491
Number of extensions: 2976
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 75
length of database: 494,079
effective HSP length: 51
effective length of query: 24
effective length of database: 418,038
effective search space: 10032912
effective search space used: 10032912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)