BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645268|ref|NP_207438.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(97 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223307.1| putative [Helicobacter pylori J99] 185 2e-49
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 25 0.35
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 23 0.79
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 23 0.79
ref|NP_223475.1| putative osmoprotection binding protein [H... 23 0.79
ref|NP_223268.1| putative [Helicobacter pylori J99] 23 0.79
ref|NP_223244.1| putative [Helicobacter pylori J99] 23 0.79
ref|NP_223417.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223812.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223157.1| putative Outer membrane protein [Helicobac... 21 3.9
ref|NP_223823.1| putative nucleoside transporter [Helicobac... 21 5.1
ref|NP_223761.1| putative [Helicobacter pylori J99] 21 5.1
ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 21 5.1
ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter... 20 6.7
ref|NP_223158.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobact... 20 8.7
ref|NP_223516.1| putative [Helicobacter pylori J99] 20 8.7
ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobact... 20 8.7
ref|NP_223063.1| putative [Helicobacter pylori J99] 20 8.7
>ref|NP_223307.1| putative [Helicobacter pylori J99]
Length = 97
Score = 185 bits (469), Expect = 2e-49
Identities = 93/97 (95%), Positives = 96/97 (98%)
Query: 1 MIFSTLINAIAVILSSLITIYMWIVIIYSLISFVQPNPNNPIMQILARLCEPVFYFLRSR 60
MIFSTLINAIAVILSSLITIYMW+VIIYSLISFVQPNPNNPIMQILARLCEPVFYFLRSR
Sbjct: 1 MIFSTLINAIAVILSSLITIYMWVVIIYSLISFVQPNPNNPIMQILARLCEPVFYFLRSR 60
Query: 61 FKLVFNGLDFSPLVVVIVLKFLDLTLIQWLFMLAKNL 97
FKLVFNGLDF+PLVVVIVLKFLDLTLIQWLF LAK+L
Sbjct: 61 FKLVFNGLDFAPLVVVIVLKFLDLTLIQWLFALAKSL 97
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 24.6 bits (52), Expect = 0.35
Identities = 23/87 (26%), Positives = 41/87 (46%), Gaps = 11/87 (12%)
Query: 9 AIAVILSSLITIYMWIVIIYSLISFVQPNPNNPIMQILARLCEPVFYFLRSRFKLVFNGL 68
A+A+ LS Y+ +V I ++S V NP + + + EP F L SR+ + +
Sbjct: 459 ALAIALS-----YVVVVTIIPMVSSVVVNPRHSRFYMWS---EPFFKALESRYTKLLQWV 510
Query: 69 DFSPLVVVIVLKFLDLTLIQWLFMLAK 95
L++ I + L + LF+ +K
Sbjct: 511 LNHKLIIFIAVV---LVFVGSLFVASK 534
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 23.5 bits (49), Expect = 0.79
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 15 SSLITIYMWIVIIYSLISFVQPNPNNPIMQILA 47
SS + Y+W+ I+ F+ PIMQ LA
Sbjct: 287 SSFLGKYLWLFIVGVAFFFIGFATLEPIMQSLA 319
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 23.5 bits (49), Expect = 0.79
Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 18/70 (25%)
Query: 6 LINAIAVILSSLITIYMWIVIIYS---LISFVQP--NPNNPIMQILARLCEPVFYFLRSR 60
L +A++L L+T Y+ + + + S+++ NPN + +
Sbjct: 5 LYTMLALLLIGLLTAYLILFTEWGNKIIASYIEKKINPNERYLSV-------------KT 51
Query: 61 FKLVFNGLDF 70
FKL FN LDF
Sbjct: 52 FKLRFNSLDF 61
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 23.5 bits (49), Expect = 0.79
Identities = 18/81 (22%), Positives = 35/81 (42%), Gaps = 3/81 (3%)
Query: 2 IFSTLINAIAVILSS---LITIYMWIVIIYSLISFVQPNPNNPIMQILARLCEPVFYFLR 58
+F+ I I V L + ++ +Y + I++S + ++ I + C P F R
Sbjct: 107 LFALFIPVIGVGLKNALLVLVLYGLLPIVHSTYNALKEAREEVIKAAIGLGCNPKELFFR 166
Query: 59 SRFKLVFNGLDFSPLVVVIVL 79
RF L + + V++L
Sbjct: 167 VRFLLAIPQILVGLRIAVVML 187
>ref|NP_223268.1| putative [Helicobacter pylori J99]
Length = 205
Score = 23.5 bits (49), Expect = 0.79
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 54 FYFLRSRFKLVFNGLDFSPLVVVIVLKFLDLT 85
FYF++SRF F + V I F D T
Sbjct: 170 FYFIQSRFSKAFGTPRLNIYSVGITFTFYDFT 201
>ref|NP_223244.1| putative [Helicobacter pylori J99]
Length = 183
Score = 23.5 bits (49), Expect = 0.79
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 39 NNPIMQILARLCEPVFYFLRSRFKLVFNGLDFSPLVVVIVLKFLDL 84
++P++ ++A + +RS F+++ + LDF PL + + K L L
Sbjct: 134 SSPLLGVIALVALSSSLLMRSNFQILDSLLDF-PLFLFVFFKTLYL 178
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 23.1 bits (48), Expect = 1.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 34 VQPNPNNPIMQILARL------CEPVFYFLRSRFK 62
+ P+PN P + IL+ L P F L+ FK
Sbjct: 67 ISPDPNTPTLLILSALDNSLKDYAPTFNVLKKTFK 101
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 21.2 bits (43), Expect = 3.9
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 13 ILSSLITIYMWIVIIYSLISFVQPNPNNPIMQILARLCE 51
I+S+L + + + YS I V P N+ ++ ++ + +
Sbjct: 575 IISALPAVLILAITFYSGILKVMPKSNDSVLNNVSHVAQ 613
>ref|NP_223157.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 465
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 55 YFLRSRFKLVFNGLDFSPL 73
YFL + F L+F+GL S L
Sbjct: 6 YFLYALFFLLFSGLFLSKL 24
>ref|NP_223823.1| putative nucleoside transporter [Helicobacter pylori J99]
Length = 418
Score = 20.8 bits (42), Expect = 5.1
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 2 IFSTLINAIAVILSSLITIYMWIVIIYSLISFV 34
IF+ + AI + +SLI++ ++ I+ +I+ +
Sbjct: 97 IFAINVLAIIIFFASLISLLYYLKIMPLVINLI 129
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 20.8 bits (42), Expect = 5.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 28 YSLISFVQPNPNNPIMQIL 46
Y L+ +PN NNP+++ L
Sbjct: 750 YLLMVNREPNENNPVLKRL 768
>ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 20.8 bits (42), Expect = 5.1
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 5 TLINAIAVI--------LSSLITIYMWIVIIYSLISFVQPNPNNPIMQILARLCEPVFYF 56
T +N IA++ L ++T + +++++S + P QIL L + +F
Sbjct: 42 TTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFF 101
Query: 57 L 57
+
Sbjct: 102 I 102
>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
Length = 608
Score = 20.4 bits (41), Expect = 6.7
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 37 NPNNPIMQIL 46
NPNNP+ ++L
Sbjct: 248 NPNNPLRKVL 257
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 28 YSLISFVQPNPNNPIMQIL 46
Y L+ +PN NNP++ L
Sbjct: 670 YLLMVNREPNENNPVLNRL 688
>ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 436
Score = 20.0 bits (40), Expect = 8.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 32 SFVQPNPNNPI 42
SFV NPN PI
Sbjct: 184 SFVASNPNAPI 194
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 20.0 bits (40), Expect = 8.7
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 14 LSSLITIYMWIVIIYSLISFVQPNPNNP 41
LSS + + ++ Y ++ +Q NP+ P
Sbjct: 179 LSSSLYAIISVLKHYGMLEDIQQNPSKP 206
>ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 454
Score = 20.0 bits (40), Expect = 8.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 32 SFVQPNPNNPI 42
SFV NPN PI
Sbjct: 184 SFVASNPNAPI 194
>ref|NP_223063.1| putative [Helicobacter pylori J99]
Length = 207
Score = 20.0 bits (40), Expect = 8.7
Identities = 7/18 (38%), Positives = 11/18 (60%)
Query: 49 LCEPVFYFLRSRFKLVFN 66
L + + YFL+ + L FN
Sbjct: 67 LAQQIAYFLKDKSALTFN 84
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.337 0.149 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,710
Number of Sequences: 1491
Number of extensions: 3184
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 19
length of query: 97
length of database: 494,079
effective HSP length: 73
effective length of query: 24
effective length of database: 385,236
effective search space: 9245664
effective search space used: 9245664
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 40 (20.0 bits)