BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645271|ref|NP_207441.1| hypothetical protein
[Helicobacter pylori 26695]
(135 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223310.1| putative [Helicobacter pylori J99] 263 2e-72
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 30 0.018
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 30 0.024
ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylor... 27 0.15
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 27 0.15
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 26 0.34
ref|NP_222783.1| putative [Helicobacter pylori J99] 25 0.58
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 25 0.76
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 25 0.99
ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter p... 25 0.99
ref|NP_223394.1| putative [Helicobacter pylori J99] 25 0.99
ref|NP_223617.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_223158.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_224019.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 23 2.9
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 23 2.9
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 23 2.9
ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99] 23 3.8
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 23 3.8
ref|NP_224070.1| putative [Helicobacter pylori J99] 22 4.9
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 22 4.9
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 22 4.9
ref|NP_223543.1| putative [Helicobacter pylori J99] 22 4.9
ref|NP_223219.1| putative [Helicobacter pylori J99] 22 4.9
ref|NP_223990.1| putative [Helicobacter pylori J99] 22 6.4
ref|NP_223883.1| 30S RIBOSOMAL PROTEIN S18 [Helicobacter py... 22 6.4
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 22 6.4
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 22 6.4
ref|NP_223754.1| Pyruvate ferrodoxin oxidoreductase [Helico... 22 8.4
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 22 8.4
>ref|NP_223310.1| putative [Helicobacter pylori J99]
Length = 135
Score = 263 bits (671), Expect = 2e-72
Identities = 129/135 (95%), Positives = 132/135 (97%)
Query: 1 MGNLTYYAYMYLILFVCLLPVLLMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSVP 60
MGNLTYYAYMYLILFVCLLPVLL+GL WRLTRPPLKQNIPNKSLSLENLNEQIKNL+SVP
Sbjct: 1 MGNLTYYAYMYLILFVCLLPVLLVGLAWRLTRPPLKQNIPNKSLSLENLNEQIKNLQSVP 60
Query: 61 ALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPNYQQKI 120
ALEKLKN FNERFKICPKDKETLWLETIQ LVASEFFELEDAINFGQELENANPNY+QKI
Sbjct: 61 ALEKLKNRFNERFKICPKDKETLWLETIQNLVASEFFELEDAINFGQELENANPNYRQKI 120
Query: 121 ANATGLALKNKKEKG 135
ANATGLALKNKKEKG
Sbjct: 121 ANATGLALKNKKEKG 135
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 30.4 bits (67), Expect = 0.018
Identities = 32/119 (26%), Positives = 52/119 (42%), Gaps = 13/119 (10%)
Query: 19 LPVLLMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSV--PALEKLKNDFNERFKIC 76
L LL GL+ RL+ QN N L L L+ I+N P L+ L+ F K+
Sbjct: 112 LKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSPLLDALETKFTRLEKL- 170
Query: 77 PKDKETLWLETIQKLVASEFFELEDAINFG----QELENANPNYQQKIANATGLALKNK 131
++E LE ++ +LE+ +NF + L+ Y++ + L+ K K
Sbjct: 171 --ERERRSLEDKKRFQK----DLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEK 223
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 30.0 bits (66), Expect = 0.024
Identities = 14/52 (26%), Positives = 29/52 (54%)
Query: 44 LSLENLNEQIKNLKSVPALEKLKNDFNERFKICPKDKETLWLETIQKLVASE 95
++L+N++E ++ +K+ P+ E KN ERF + + + +Q+L E
Sbjct: 387 IALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQSKAILEMRLQRLTGLE 438
>ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylori J99]
Length = 440
Score = 27.3 bits (59), Expect = 0.15
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 88 IQKLVASEFFELEDAINFGQELENANPNYQQKI--ANATGL 126
I+ L SE +E+E+A + GQ+ +A P+ + I N TGL
Sbjct: 240 IRHLQRSEVYEVEEAFSAGQKGSSAMPHKRNPILSENITGL 280
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 27.3 bits (59), Expect = 0.15
Identities = 30/114 (26%), Positives = 48/114 (41%), Gaps = 30/114 (26%)
Query: 23 LMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSVPALEKLKND-------------- 68
L+G +R + ++ L+NL E++ N KS A +L D
Sbjct: 479 LIGTPLDESRIAFRDAFDSRGYKLKNLVEEV-NQKSPNARNELDKDALKVDERINLVYTL 537
Query: 69 FNERF-KICPKDKETLWLETIQKL---------VASEFFE-----LEDAINFGQ 107
F+ +F +I P DK T WL I+ + VA+EF + +DA+ Q
Sbjct: 538 FSAQFLRIFPSDKTTAWLSPIEAINSPNKEISSVATEFLKNIFSGFDDALKTNQ 591
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 26.2 bits (56), Expect = 0.34
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 49 LNEQIKNLKSVPALEKLKNDFN 70
LNEQ KN ALE LKN +N
Sbjct: 427 LNEQKKNDDDKAALETLKNSYN 448
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 25.4 bits (54), Expect = 0.58
Identities = 22/82 (26%), Positives = 39/82 (46%), Gaps = 11/82 (13%)
Query: 40 PNKSLSLENLNEQIKNLKSVPALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFEL 99
PN +L ++NLNE K L EKLK+ + D E + + A +F ++
Sbjct: 695 PNSALVIDNLNE-AKELHDKVGAEKLKSFLEKAI-----DNEQYCV-----IFAHDFRQI 743
Query: 100 EDAINFGQELENANPNYQQKIA 121
+ +F + E N +++Q +A
Sbjct: 744 KTNYHFDKLKELLNNHFKQCLA 765
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 25.0 bits (53), Expect = 0.76
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Query: 94 SEFFELEDAINFGQELENANPNYQQKIAN--ATGLALKNK 131
S + +++DAIN+G+ L + Y I N A L L NK
Sbjct: 381 SSYNQMQDAINYGESLLSNTVAYGDFITNWVAPYLDLNNK 420
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 24.6 bits (52), Expect = 0.99
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 40 PN-KSLSLENLNEQIKNLKSVPALEKLKNDFNERFKICPKDKETLW-----LETIQKLVA 93
PN K LE + + + K++ LE + + NE+ PK+K L+ I++L+
Sbjct: 338 PNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLG 397
Query: 94 ------SEFFELEDAINFGQELEN 111
S +F+L + + QE+EN
Sbjct: 398 IGFKDPSAYFQLGVSESEKQEIEN 421
>ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter pylori J99]
Length = 119
Score = 24.6 bits (52), Expect = 0.99
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 37 QNIPNKSLSLENLNEQIKNLKSV-------PALEKLKNDFNERFKICPKDKETLWLETIQ 89
Q P K +S N + K+ P LE L NE K D + +TI+
Sbjct: 18 QTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIK 77
Query: 90 KLVAS 94
LV S
Sbjct: 78 GLVVS 82
>ref|NP_223394.1| putative [Helicobacter pylori J99]
Length = 241
Score = 24.6 bits (52), Expect = 0.99
Identities = 19/68 (27%), Positives = 30/68 (43%), Gaps = 16/68 (23%)
Query: 65 LKNDFNERFKICPKDKETLW-----------LETIQKLV-ASEFFELED----AINFGQE 108
+ DF++ FK C K+ W +T++ L+ SE F LE +N +E
Sbjct: 169 ISEDFSDHFKRCEKEVLLFWGKDDKATPLSSAQTMRTLLKKSELFVLEGDHFFFLNQAKE 228
Query: 109 LENANPNY 116
+E NY
Sbjct: 229 IEKLVENY 236
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.3 bits (51), Expect = 1.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 95 EFFELEDAINFGQELENANPNYQQKIANATGLALKNKKEK 134
EF+ L+D ELEN + Y+++ +K +KEK
Sbjct: 107 EFYSLKDIA----ELENEHEKYEREFNRIVEEEVKKQKEK 142
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 24.3 bits (51), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 38 NIPNKSLSL---ENLNEQIKNLKSVPALEKLKNDFNERF 73
N PN SL+ + ++ NLK+ P+ + D +E+F
Sbjct: 548 NFPNVSLNAYLSDIMDRSFANLKNYPSTSESLKDLSEKF 586
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 23.5 bits (49), Expect = 2.2
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 62 LEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPNYQQKIA 121
++++K D +R KD T W + ++ + E +++ F LE A+P+ +K A
Sbjct: 235 MQEIKQDSEKR-----KDFITTWDKLVEACKSVEGIDIDLEDFFNMYLEYADPSSSKKRA 289
Query: 122 N 122
+
Sbjct: 290 D 290
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 23.1 bits (48), Expect = 2.9
Identities = 22/95 (23%), Positives = 40/95 (41%), Gaps = 7/95 (7%)
Query: 38 NIPNKSLSLENLNEQIKNLKSVPALEKLKNDFNERFKIC------PKDKETLWLETIQKL 91
NIP + + + E+ + +K AL + ++RF I P+ + E I L
Sbjct: 355 NIPYRLIGAVSFYERAE-VKDALALMHVVAKKDDRFFIKRVLNKPPRGLGKITQEWIFSL 413
Query: 92 VASEFFELEDAINFGQELENANPNYQQKIANATGL 126
+ E LE+A+ G + NP + + T +
Sbjct: 414 LDEEGLNLEEALKIGAFKDKLNPKNEYALKKFTAM 448
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 23.1 bits (48), Expect = 2.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 49 LNEQIKNLKSVPALEKLKNDFNER-FKICPKDKETLWLETIQKLVASE 95
+ +QI N KS K+ ND N+R K + + E Q L +E
Sbjct: 532 IKKQILNAKSASECLKIFNDLNKRILKRADNKMDAIHSEEFQNLDLNE 579
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 23.1 bits (48), Expect = 2.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 51 EQIKNLKSVPALEKLKNDFN 70
+ IK++ PA+ +KNDFN
Sbjct: 477 KSIKDVILFPAMRPVKNDFN 496
>ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 22.7 bits (47), Expect = 3.8
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 39 IPNKSLSLENLNEQIKNLKSVPALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFE 98
+P K + L E +K S+ +L+K++N E+ L TIQ+ + + +
Sbjct: 111 LPEKIILLLINKENLKQRLSLKSLDKIENQGIEK------------LLTIQQKLKTHAYA 158
Query: 99 LEDAINFGQEL-----ENANPNYQQKIA 121
L++ FG E+ + + N +KIA
Sbjct: 159 LQE--KFGCEVLELDAQKSAKNLHEKIA 184
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 22.7 bits (47), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (60%), Gaps = 1/26 (3%)
Query: 49 LNEQIKNLKSVPALEKLKNDFNERFK 74
L E+IKN P LEKL+ D N FK
Sbjct: 236 LEEKIKNHIFKPTLEKLQAD-NTPFK 260
>ref|NP_224070.1| putative [Helicobacter pylori J99]
Length = 262
Score = 22.3 bits (46), Expect = 4.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 98 ELEDAINFGQELENANPNYQQK 119
E+E+A+ G +LENA QK
Sbjct: 147 EMENAMQEGLKLENATKGAHQK 168
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 22.3 bits (46), Expect = 4.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 21 VLLMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSVPALEKLK 66
+L +G++W L+ + +KSL + E+I+ V K K
Sbjct: 37 LLFVGILWYFLAKRLRSFLHSKSLEISKRLEEIQAQLKVSKEHKKK 82
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 22.3 bits (46), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 47 ENLNEQIKNLKSVPALEKLKNDFNERFK 74
+ LN++ N ALE L+ +FN R K
Sbjct: 736 KTLNDEEVNSAVQKALEILEKEFNARLK 763
>ref|NP_223543.1| putative [Helicobacter pylori J99]
Length = 100
Score = 22.3 bits (46), Expect = 4.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 35 LKQNIPNKSLSLENLNEQIKNLKSVPALEKLKND 68
LK++I N+ + LE + ++NL++ L+K D
Sbjct: 14 LKKHILNQKIELEVFDLVVENLRNQIPLDKRFKD 47
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 22.3 bits (46), Expect = 4.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 42 KSLSLENLNEQIKNLKSVPALEKLK 66
+ LSL+NL++ ++ LK V A E K
Sbjct: 29 EELSLKNLDKNLQILKEVGAAEICK 53
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 21.9 bits (45), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 45 SLENLNEQIKNLKSVPAL----EKLKNDFNERFKI 75
S+++L + L P+L + LKNDF + KI
Sbjct: 8 SIKDLTPESNELTHRPSLYNLLKNLKNDFKKELKI 42
>ref|NP_223883.1| 30S RIBOSOMAL PROTEIN S18 [Helicobacter pylori J99]
Length = 85
Score = 21.9 bits (45), Expect = 6.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 62 LEKLKNDFNERFKICPK 78
L+ LK+ +ER+KI P+
Sbjct: 26 LDMLKHTLSERYKIMPR 42
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 21.9 bits (45), Expect = 6.4
Identities = 8/36 (22%), Positives = 18/36 (49%)
Query: 54 KNLKSVPALEKLKNDFNERFKICPKDKETLWLETIQ 89
K +S + + + + FK+ P DK W++ ++
Sbjct: 495 KAYRSKGGAKDIIHTISHTFKLLPSDKRLQWVQKLR 530
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.9 bits (45), Expect = 6.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 122 NATGLALKNKKEK 134
N + +ALKNKKEK
Sbjct: 1531 NISEIALKNKKEK 1543
>ref|NP_223754.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 407
Score = 21.6 bits (44), Expect = 8.4
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 47 ENLNEQIKNLKSVPALEK 64
E L + +KNLK++ L+K
Sbjct: 310 ERLGQDLKNLKALAILDK 327
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 21.6 bits (44), Expect = 8.4
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 69 FNERFKICPKDKETLWLETIQKLVA-------SEFFELEDAINFGQELENANP 114
FN K K TL T++ L A + F IN G+ + N NP
Sbjct: 927 FNSPTNTSVKGKVTLNNITLKNLNAPLSFGDGTIVFSAHSVINIGEAITNGNP 979
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,042
Number of Sequences: 1491
Number of extensions: 7283
Number of successful extensions: 43
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 31
length of query: 135
length of database: 494,079
effective HSP length: 69
effective length of query: 66
effective length of database: 391,200
effective search space: 25819200
effective search space used: 25819200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)