BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645274|ref|NP_207444.1| hypothetical protein
[Helicobacter pylori 26695]
         (196 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223313.1|  putative [Helicobacter pylori J99]              363  e-102
ref|NP_224207.1|  PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobact...    25  1.4
ref|NP_222794.1|  PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact...    25  1.4
ref|NP_223143.1|  Molybdate ABC transporter, periplasmic-bin...    24  2.4
ref|NP_223252.1|  putative [Helicobacter pylori J99]               24  3.1
ref|NP_223786.1|  METHIONYL-TRNA FORMYLTRANSFERASE [Helicoba...    23  4.0
ref|NP_223054.1|  septum formation protein [Helicobacter pyl...    23  5.3
ref|NP_224081.1|  DNA POLYMERASE I [Helicobacter pylori J99]       22  9.0
ref|NP_223763.1|  GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter...    22  9.0
ref|NP_223739.1|  putative Outer membrane protein [Helicobac...    22  9.0
ref|NP_223636.1|  DNA transfer protein [Helicobacter pylori ...    22  9.0
ref|NP_223076.1|  putative RIBOSOMAL PROTEIN L11 METHYLTRANS...    22  9.0

>ref|NP_223313.1| putative [Helicobacter pylori J99]
          Length = 209

 Score =  363 bits (931), Expect = e-102
 Identities = 181/196 (92%), Positives = 189/196 (96%)

Query: 1   MERLLGETYTNTNLDKPQNKPLNKQVYEGIENCNLCKRHQNSKPVIGLFNPTSKLTFITL 60
           MERLLGETYT+ +L KPQNKPLNKQV+EGIENCNLCKRHQ+SKP+ GLFNPTSKL FITL
Sbjct: 14  MERLLGETYTDISLIKPQNKPLNKQVHEGIENCNLCKRHQHSKPITGLFNPTSKLAFITL 73

Query: 61  TPMLDSQLNFLNNLKAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHL 120
           TPMLDSQL+FLNNLKAAMLESIIQKVFN PLKDCSILSLLKCDSNSLNLEEEINACL HL
Sbjct: 74  TPMLDSQLHFLNNLKAAMLESIIQKVFNYPLKDCSILSLLKCDSNSLNLEEEINACLPHL 133

Query: 121 TWQLDNSASKVIVVFGEILPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK 180
           TWQLDNSA KVI+VFGE+LPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK
Sbjct: 134 TWQLDNSAPKVIIVFGEVLPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK 193

Query: 181 EALAHFKIALQFLNQS 196
           EALAHFKIALQFLNQS
Sbjct: 194 EALAHFKIALQFLNQS 209



>ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobacter pylori J99]
          Length = 262

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 14/39 (35%), Positives = 20/39 (50%)

Query: 96  ILSLLKCDSNSLNLEEEINACLFHLTWQLDNSASKVIVV 134
           +L LL+     +N+E  INA +      L N  SKV +V
Sbjct: 56  VLRLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIV 94



>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
          Length = 352

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 141 KRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKKE 181
           K+L  LSKE+S    +S+ +K +LS   LE + +N  L ++
Sbjct: 32  KKLTELSKEQSSIEEISVASKEYLS--VLEGIKENKELLED 70



>ref|NP_223143.1| Molybdate ABC transporter, periplasmic-binding protein
           [Helicobacter pylori J99]
          Length = 246

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 148 KEESFGRIVSLKTKHFLSTHALEDMLKNPTLKKEALAHFKIA 189
           KEE + + V +     L   +LE +LK+P +K+ A+A+ K+A
Sbjct: 95  KEEVYAKGVLVLWSENLKMDSLE-ILKDPKIKRIAMANPKLA 135



>ref|NP_223252.1| putative [Helicobacter pylori J99]
          Length = 978

 Score = 23.9 bits (50), Expect = 3.1
 Identities = 17/67 (25%), Positives = 31/67 (45%)

Query: 79  LESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHLTWQLDNSASKVIVVFGEI 138
           L++I  K+   P+K  + L  L    +  NL+  I   +   ++++DN+  K      E 
Sbjct: 197 LKTIELKINTSPMKSLAFLKPLFQRQSQKNLKTWIFDKIQFASFKIDNALIKANFTPSEF 256

Query: 139 LPKRLLN 145
           +P  L N
Sbjct: 257 IPSLLEN 263



>ref|NP_223786.1| METHIONYL-TRNA FORMYLTRANSFERASE [Helicobacter pylori J99]
          Length = 305

 Score = 23.5 bits (49), Expect = 4.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 131 VIVVFGEILPKRLLNLS 147
           V+V +G+ILPK +L ++
Sbjct: 87  VVVAYGKILPKEVLTIA 103



>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
          Length = 844

 Score = 23.1 bits (48), Expect = 5.3
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 43  KPVIGLFNPTSKLTFITLTPMLDSQL--NFLNNLKAAMLESIIQKVFNCPLKDCSILSLL 100
           K V+G+  P S+   I L  +L+S+L     + L  A+ + I+   F   LK   +  LL
Sbjct: 475 KDVVGIEIPNSQSQIIYLREILESELFQKSSSPLTLALGKDIVGNPFITDLK--KLPHLL 532

Query: 101 KCDSNSLNLEEEINACLFHLTWQLDNSASKVIVV 134
              +        +NA +  L ++      K++++
Sbjct: 533 IAGTTGSGKSVGVNAMILSLLYKNPPDQLKLVMI 566



>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score = 22.3 bits (46), Expect = 9.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 134 VFGEILPKRLLNLSKEESFGRIVSLKTKHFLST 166
           +FGE L K   +++K  +FG +  + +K    T
Sbjct: 713 LFGEDLAKEKRSIAKSINFGLVYGMGSKKLSET 745



>ref|NP_223763.1| GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter pylori J99]
          Length = 567

 Score = 22.3 bits (46), Expect = 9.0
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 96  ILSLLKCDSN----SLNLEEEINACLFHLTWQLD 125
           I ++L+  SN    ++N+ E ++A  FH+ W  D
Sbjct: 477 ITTVLQVISNVIDYNMNISEAVSAPRFHMQWLPD 510



>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 511

 Score = 22.3 bits (46), Expect = 9.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 121 TWQLDNSASKVIVVFGEILPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK 180
           T Q+D      I+ F  I   +L     +  F  I++ K         L+++LKN TLKK
Sbjct: 431 TKQMDILMDAEILKF--IFKMKLQGSMHQPKFSLILNEKAIQQNLQQGLKEILKNDTLKK 488



>ref|NP_223636.1| DNA transfer protein [Helicobacter pylori J99]
          Length = 140

 Score = 22.3 bits (46), Expect = 9.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 62 PMLDSQLNFLNNLKAAMLESIIQKV 86
          P+ DS++NFL+N      + +++ +
Sbjct: 68 PLSDSEINFLHNTDMRARQVLVKNI 92



>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
           pylori J99]
          Length = 329

 Score = 22.3 bits (46), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 86  VFNCPLKDCSILSLLKCDSNSLNLEEEI 113
           + +  LK   + +L  CD++SL +EE +
Sbjct: 203 ILSIALKKQGVSALTACDTDSLAVEETL 230



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,124
Number of Sequences: 1491
Number of extensions: 9323
Number of successful extensions: 34
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 12
length of query: 196
length of database: 494,079
effective HSP length: 73
effective length of query: 123
effective length of database: 385,236
effective search space: 47384028
effective search space used: 47384028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)