BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645275|ref|NP_207445.1| fucosyltransferase
[Helicobacter pylori 26695]
         (476 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223314.1|  ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobact...   820  0.0
ref|NP_223719.1|  ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobact...   791  0.0
ref|NP_223281.1|  putative lipopolysaccharide biosynthesis p...    45  5e-06
ref|NP_223377.1|  putative Outer membrane protein [Helicobac...    33  0.012
ref|NP_223691.1|  putative S/N-oxide reductase [Helicobacter...    29  0.30
ref|NP_224075.1|  putative [Helicobacter pylori J99]               28  0.39
ref|NP_223767.1|  TYPE II DNA MODIFICATION ENZYME (METHYLTRA...    27  0.87
ref|NP_223515.1|  putative [Helicobacter pylori J99]               27  1.1
ref|NP_222748.1|  putative [Helicobacter pylori J99]               25  3.3
ref|NP_223276.1|  DNA LIGASE [Helicobacter pylori J99]             25  5.6
ref|NP_223778.1|  ATP synthase F1, subunit gamma [Helicobact...    24  7.4
ref|NP_223274.1|  putative vacuolating cytotoxin (VacA) para...    24  7.4
ref|NP_224152.1|  DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N...    24  9.6
>ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
          Length = 454

 Score =  820 bits (2117), Expect = 0.0
 Identities = 402/478 (84%), Positives = 426/478 (89%), Gaps = 26/478 (5%)

Query: 1   MFQPLLDAFIESASIEKMVSKSPPPPLKIAVANWW--GDEEIKEFKKSVLYFILSQRYAI 58
           MFQPLLDA+ +S  +++   K   PPL IA+ANWW     E K F++ +LYFILSQRY I
Sbjct: 1   MFQPLLDAYTDSTRLDETDYK---PPLNIALANWWPLDKRESKGFRRFILYFILSQRYTI 57

Query: 59  TLHQNPNESSDLVFSNPLGAARKILSYQNTKRVFYTGENESPNFNLFDYAIGFDELDFND 118
           TLHQNPNE SDLVF +P+G+ARKILSYQNTKRVFYTGENE PNFNLFDYAIGFDELDF D
Sbjct: 58  TLHQNPNEPSDLVFGSPIGSARKILSYQNTKRVFYTGENEVPNFNLFDYAIGFDELDFRD 117

Query: 119 RYLRMPLYYAHLHYEAELVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDL 178
           RYLRMPLYYA LHY+AE VNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESD 
Sbjct: 118 RYLRMPLYYASLHYKAESVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDP 177

Query: 179 LKRGFASFVASNANAPMRNAFYDALNSIEPVTGGGSVRNTLGYKVGNKSEFLSQYKFNLC 238
           LKRGFASFVASN NAP+RNAFYDALNSIEPVTGGGSV+NTLGY V NKSEFLSQYKFNLC
Sbjct: 178 LKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVKNTLGYNVKNKSEFLSQYKFNLC 237

Query: 239 FENSQGYGYVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYL 298
           FEN+QGYGYVTEKI+DAYFSHTIPIYWGSPSVAKDFNPKSFVNV DF NFDEAIDY++YL
Sbjct: 238 FENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAIDYVRYL 297

Query: 299 HTHPNAYLDMLYENPLNTLDGKAYFYQDLSFKKILDFFKTILENDTIYHNNPFIFYRDLH 358
           HTHPNAYLDMLYENPLNTLDGKAYFYQ+LSFKKILDFFKTILENDTIYH+NPFIFYRDL+
Sbjct: 298 HTHPNAYLDMLYENPLNTLDGKAYFYQNLSFKKILDFFKTILENDTIYHDNPFIFYRDLN 357

Query: 359 EPLISIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRV 418
           EPL++IDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLR        
Sbjct: 358 EPLVAIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLR-------- 409

Query: 419 NYDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRTIRRWVKK 476
                        VNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRTIRRWVKK
Sbjct: 410 -------------VNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRTIRRWVKK 454
>ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
          Length = 436

 Score =  791 bits (2043), Expect = 0.0
 Identities = 393/477 (82%), Positives = 411/477 (85%), Gaps = 45/477 (9%)

Query: 1   MFQPLLDAFIESASIEKMVS-KSPPPPLKIAVANWWGDEEIKEFKKSVLYFILSQRYAIT 59
           MFQPLLDAFIES  I+K ++ KSPPPPLKIAVANWWG  E  EFKKS LYFILSQRY IT
Sbjct: 1   MFQPLLDAFIESTPIKKKITFKSPPPPLKIAVANWWGGAE--EFKKSTLYFILSQRYTIT 58

Query: 60  LHQNPNESSDLVFSNPLGAARKILSYQNTKRVFYTGENESPNFNLFDYAIGFDELDFNDR 119
           LHQNPNE SDLV  +P+G+ARKILSYQNTKRVFYTGENE PNFNLFDYAIGFDELDF DR
Sbjct: 59  LHQNPNEPSDLVLGSPIGSARKILSYQNTKRVFYTGENEVPNFNLFDYAIGFDELDFRDR 118

Query: 120 YLRMPLYYAHLHYEAELVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDLL 179
           YLRMPLYYA LHY+AE VNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESD L
Sbjct: 119 YLRMPLYYASLHYKAESVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDPL 178

Query: 180 KRGFASFVASNANAPMRNAFYDALNSIEPVTGGGSVRNTLGYKVGNKSEFLSQYKFNLCF 239
           KRGFASFVASN NAP+RNAFYDALNSIEPVTGGGSV+NTLGY V NKSEFLSQYKFNLCF
Sbjct: 179 KRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVKNTLGYNVKNKSEFLSQYKFNLCF 238

Query: 240 ENSQGYGYVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYLH 299
           EN+QGYGYVTEKI+DAYFSHTIPIYWGSPSVAKDFNPKSFVNV DF NFDEAIDY++YLH
Sbjct: 239 ENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAIDYVRYLH 298

Query: 300 THPNAYLDMLYENPLNTLDGKAYFYQDLSFKKILDFFKTILENDTIYHNNPFIFYRDLHE 359
           THPNAYLDMLYENPLNTLDGKAYFYQ+LSFKKILDFFKTILENDTIYH+NPFIFYRDL+E
Sbjct: 299 THPNAYLDMLYENPLNTLDGKAYFYQNLSFKKILDFFKTILENDTIYHDNPFIFYRDLNE 358

Query: 360 PLISIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVN 419
           PL++IDDLRVNYDDLRVNYDDLRVNYDDLRVNY                           
Sbjct: 359 PLVAIDDLRVNYDDLRVNYDDLRVNYDDLRVNY--------------------------- 391

Query: 420 YDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRTIRRWVKK 476
                          DRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLR IRRWVKK
Sbjct: 392 ---------------DRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRAIRRWVKK 433
>ref|NP_223281.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
           pylori J99]
          Length = 444

 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 378 YDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRL 437
           Y ++   YDDL   YDDL  N   +   YDDL   YDDL  N   +   YDDL   Y+ L
Sbjct: 243 YKNVVAKYDDLTGKYDDLNKN---IAEKYDDLTGKYDDLNKN---IAEKYDDLMGKYEAL 296

Query: 438 LQNASPLLE 446
           L   + + E
Sbjct: 297 LAKETNIKE 305
 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 349 NPFIFYRDLHEPLISIDDLRVN---YDDLRVNYDDLRVNYDDLRVN----YDDLRVNYDD 401
           NP +F +   +  + I ++      Y ++   YDDL   YDDL  N    YDDL   YDD
Sbjct: 218 NPVVFKKIKRKLNLFIGNILARTEAYKNVVAKYDDLTGKYDDLNKNIAEKYDDLTGKYDD 277

Query: 402 LRVN----YDDLRVNYDDLRVNYDDLRVNYDDLRVNYDR 436
           L  N    YDDL   Y+ L     +++  + + R + ++
Sbjct: 278 LNKNIAEKYDDLMGKYEALLAKETNIKETFWESRADNEK 316
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 638

 Score = 33.5 bits (75), Expect = 0.012
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 22/140 (15%)

Query: 57  AITLHQNPNESSDLVFSNPLGA------ARKILSY-QNTKRVFYTGENESPNFNLFDYAI 109
           A+TL Q+ +  S  + +  +G+      A+ I +  QN K++     N S  FNLF+ +I
Sbjct: 263 ALTLSQSNHTLSTQLQARAMGSQTNREFAKDIYALAQNQKQIL---SNASSIFNLFN-SI 318

Query: 110 GFDELDF-NDRYLRMP----------LYYAHLHYEAELVNDTTAPYKLKDNSLYALKKPS 158
             D+L +  + YL++P              +L+ E   V D  A Y  + +S  ++ K  
Sbjct: 319 PKDQLKYLENAYLKVPHLGKTPTNPYRQNVNLNKEINAVQDNVANYGNRLDSALSVAKDV 378

Query: 159 HHFKENHPNLCAVVNDESDL 178
           ++ K N   +    ND  +L
Sbjct: 379 YNLKSNQTEIVTTYNDAKNL 398
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
          Length = 796

 Score = 28.9 bits (63), Expect = 0.30
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 399 YDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRLLQNASPLLE 446
           Y D RV Y  +R ++ + + N+ +LR   + +RV++D  L  A+  L+
Sbjct: 76  YSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDMALDLAAKKLK 123
 Score = 26.6 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (61%)

Query: 392 YDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 428
           Y D RV Y  +R ++ + + N+ +LR   + +RV++D
Sbjct: 76  YSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWD 112
 Score = 26.6 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (61%)

Query: 378 YDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 414
           Y D RV Y  +R ++ + + N+ +LR   + +RV++D
Sbjct: 76  YSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWD 112
 Score = 26.6 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (61%)

Query: 385 YDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 421
           Y D RV Y  +R ++ + + N+ +LR   + +RV++D
Sbjct: 76  YSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWD 112
 Score = 26.6 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (61%)

Query: 371 YDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 407
           Y D RV Y  +R ++ + + N+ +LR   + +RV++D
Sbjct: 76  YSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWD 112
 Score = 24.6 bits (52), Expect = 5.6
 Identities = 14/52 (26%), Positives = 30/52 (56%), Gaps = 2/52 (3%)

Query: 349 NPFIFYRDLHEPLISIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 400
           NP +  + + + + S  D RV Y  +R ++ + + N+ +LR   + +RV++D
Sbjct: 63  NPTMMLKAMADRVYS--DSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWD 112
>ref|NP_224075.1| putative [Helicobacter pylori J99]
          Length = 271

 Score = 28.5 bits (62), Expect = 0.39
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 403 RVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKAYQ 461
           R+  D+    +  +  + DDL  N D  +  +D L+ NA+ L+    N    + ++  Q
Sbjct: 163 RILDDENVEKFKHILASVDDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVDKRVKQ 221
 Score = 27.7 bits (60), Expect = 0.67
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 361 LISIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 400
           L S+DDL  N D  +  +D L  N ++L  N +++ ++ D
Sbjct: 177 LASVDDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVD 216
 Score = 25.8 bits (55), Expect = 2.5
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 382 RVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDR 436
           R+  D+    +  +  + DDL  N D  +  +D L  N ++L  N +++ ++ D+
Sbjct: 163 RILDDENVEKFKHILASVDDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVDK 217
 Score = 25.4 bits (54), Expect = 3.3
 Identities = 18/88 (20%), Positives = 38/88 (42%)

Query: 389 RVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRLLQNASPLLELS 448
           R+  D+    +  +  + DDL  N D  +  +D L  N ++L  N + +  +    ++  
Sbjct: 163 RILDDENVEKFKHILASVDDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVDKRVKQG 222

Query: 449 QNTTFKIYRKAYQKSLPLLRTIRRWVKK 476
           Q     ++     ++   LR I  +V+K
Sbjct: 223 QYDFKAMFTPLIMQAQLSLRNIDNFVEK 250
 Score = 25.0 bits (53), Expect = 4.3
 Identities = 13/54 (24%), Positives = 27/54 (49%)

Query: 368 RVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 421
           R+  D+    +  +  + DDL  N D  +  +D L  N ++L  N +++ ++ D
Sbjct: 163 RILDDENVEKFKHILASVDDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVD 216
 Score = 25.0 bits (53), Expect = 4.3
 Identities = 13/54 (24%), Positives = 27/54 (49%)

Query: 375 RVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYD 428
           R+  D+    +  +  + DDL  N D  +  +D L  N ++L  N +++ ++ D
Sbjct: 163 RILDDENVEKFKHILASVDDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVD 216
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 321

 Score = 27.3 bits (59), Expect = 0.87
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 26/116 (22%)

Query: 352 IFYRDLHEPLISIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRV 411
           +F++D H           N+ DL      +R+N +DL  N+D L   +     + +  R 
Sbjct: 43  LFFKDTH-----------NFGDL------MRINPNDLP-NFDVLVSGFPCQAFSINGKRK 84

Query: 412 NYDDLR--VNYDDLRVNYDDLRVNYDR--LLQNASPLLELSQNTTFKIYRKAYQKS 463
             +D R  + Y  +R+    L+V   +  LL+N   L+   Q  TFK   KA Q++
Sbjct: 85  GLEDERGTIIYGLIRI----LKVKQPKCFLLENVKGLIHHKQQETFKTIIKALQEA 136
>ref|NP_223515.1| putative [Helicobacter pylori J99]
          Length = 541

 Score = 26.9 bits (58), Expect = 1.1
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 306 LDMLYENP---LNTLDGKAYFYQDLSFKKILDFFKTILENDTIYHNNPFIFYRDLHEPLI 362
           +D+LY+     + TLDG+     D S +++          +TI  NN  ++  +    +I
Sbjct: 280 VDLLYDKGTLYVLTLDGQI-LQMDKSLRELNSVKLPFASLNTIVLNNNKLYSLEKRGYVI 338

Query: 363 SIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLR 417
            +D    ++D   V       ++     N  D  V YD  RV YD   ++Y+D +
Sbjct: 339 EVD--LNDFDSYNVYKTPTIGSFKFFSSNRLDKGVFYDKNRVYYDRYYLDYNDFK 391
>ref|NP_222748.1| putative [Helicobacter pylori J99]
          Length = 565

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 25/95 (26%), Positives = 43/95 (44%), Gaps = 8/95 (8%)

Query: 266 GSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYLHTHPNAYLDMLYENPLNTLDGKAYFYQ 325
           G P V K  NPKS   + DF + ++ +   KY  T  +       +   + LD K +F  
Sbjct: 171 GKPFVNKFLNPKSETTMKDFMSSEKFVK--KYRFTQKDNI--KRTQELKSLLDQKRHF-- 224

Query: 326 DLSFKKILDFFKTILENDTIYHNNPFIFYRDLHEP 360
            L + ++  ++K  L ND +  +    F+   +EP
Sbjct: 225 -LGYLQVTGYWKDKL-NDPLLPSKEVSFFVFQNEP 257
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
          Length = 656

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 309 LYENPLNTLDGKA-YFYQDLSFKKILDFFKTILENDTIYHNNPFIFYRDLHEPLISIDDL 367
           L+ NP N   G       +++ K+ L F    +   +++    F+ +++  + ++S+   
Sbjct: 189 LFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGKHSLH----FLRFKECLDFIVSLGFS 244

Query: 368 RVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRV 411
            + Y  L  N+ ++  NY  L    +      D + +  D+L +
Sbjct: 245 AIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDI 288
>ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobacter pylori J99]
          Length = 301

 Score = 24.3 bits (51), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 60  LHQNP--NESSDLVFSNPLGAARKILSYQNTKRVFYT 94
           +HQNP  +E+ + + S P G+  +IL     K V Y+
Sbjct: 204 IHQNPQPSETQETITSEPSGSEDEILDSLAEKYVEYS 240
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
            J99]
          Length = 3194

 Score = 24.3 bits (51), Expect = 7.4
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 209  VTGGGSVRNTLGYKVGNKSEFLSQYKFNLCFENSQGYGYVTEKILDAYFSHTIPIYWGSP 268
            VTG  ++ +     + N +  L Q  + L   N   YGY  + IL    S  + +Y    
Sbjct: 2661 VTGTSTIMSYNNQALINFNTQLKQGAYTLINANRMVYGYDNQTILGGSLSDYLKLY---- 2716

Query: 269  SVAKDFNPK 277
                DFN K
Sbjct: 2717 -TLIDFNGK 2724
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
           J99]
          Length = 522

 Score = 23.9 bits (50), Expect = 9.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 161 FKENHPNLCAVVNDESDLLK 180
           FKENH +L   +N+E  +L+
Sbjct: 479 FKENHKSLAKTLNNEERVLE 498
  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.320    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,562
Number of Sequences: 1491
Number of extensions: 30953
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 32
length of query: 476
length of database: 494,079
effective HSP length: 81
effective length of query: 395
effective length of database: 373,308
effective search space: 147456660
effective search space used: 147456660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)