BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645277|ref|NP_207447.1| nonheme iron-containing
ferritin (pfr) [Helicobacter pylori 26695]
(167 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicoba... 336 2e-94
ref|NP_222734.1| putative [Helicobacter pylori J99] 29 0.058
ref|NP_223645.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_223040.1| putative [Helicobacter pylori J99] 26 0.64
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 25 0.84
ref|NP_222912.1| putative [Helicobacter pylori J99] 25 0.84
ref|NP_224114.1| putative component of cation transport for... 25 1.1
ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori... 25 1.1
ref|NP_223158.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 24 1.9
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 24 1.9
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 23 4.2
ref|NP_223520.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 23 5.4
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 22 9.2
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 22 9.2
ref|NP_223106.1| putative proline peptidase [Helicobacter p... 22 9.2
>ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicobacter pylori J99]
Length = 167
Score = 336 bits (862), Expect = 2e-94
Identities = 164/167 (98%), Positives = 166/167 (99%)
Query: 1 MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIVF 60
MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLI+F
Sbjct: 1 MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIIF 60
Query: 61 LNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKGKDHATFNFL 120
LNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIK KDHATFNFL
Sbjct: 61 LNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFL 120
Query: 121 QWYVSEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRKS 167
QWYV+EQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRKS
Sbjct: 121 QWYVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSRKS 167
>ref|NP_222734.1| putative [Helicobacter pylori J99]
Length = 275
Score = 29.3 bits (64), Expect = 0.058
Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 9/70 (12%)
Query: 60 FLNENNVPVQLTSIS--------APEHKFEGLTQIFQKAYEHEQHISESINNIVDH-AIK 110
FL +N P ++ A EH + ++ AY H Q+ E I N+++ A++
Sbjct: 201 FLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAYNHLQYSFEKIQNLLEEDALQ 260
Query: 111 GKDHATFNFL 120
K+HA +++
Sbjct: 261 TKEHANLSYV 270
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 28.1 bits (61), Expect = 0.13
Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
Query: 112 KDHATFNFLQWYVSEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKSR 165
+DH T L+ + E E+++++KD D N G LA+ Y+ G K +
Sbjct: 1081 RDHFTTQSLETTIKELLEQKLIYKDHKD--------NGGYILANDYLSGNVKRK 1126
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 25.8 bits (55), Expect = 0.64
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 34 HSLDGAGLF-LFDHAAEEYEHAKKLIVFLNENNVPVQLTSISAPEHKFEG 82
H + G GL+ + D A EY K+ ENN P + ++ E +F+G
Sbjct: 231 HRIVGEGLYGVADENAREYLQLKR------ENNAPTLMLHAASLEFEFKG 274
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 25.4 bits (54), Expect = 0.84
Identities = 11/40 (27%), Positives = 22/40 (54%)
Query: 100 SINNIVDHAIKGKDHATFNFLQWYVSEQHEEEVLFKDILD 139
+I N+ D+A + KD++ NF + E +E+ + L+
Sbjct: 225 NIENMKDYAFENKDYSKGNFRNYLEKEIYEQHSSLLECLE 264
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 25.4 bits (54), Expect = 0.84
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 4 KDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDGAGLFLFDHAAEEYEHAKKLIVFLNE 63
KDIIK ++E+ N + S H D +++E K+ ++ E
Sbjct: 198 KDIIKEIDEKYPINENFKRQFNEFESNIEKH----------DEIKKDFERNKESLIREIE 247
Query: 64 NNVPVQLTSISAPEHKFEGLTQIFQK 89
N+ + S PE+K L + Q+
Sbjct: 248 NHCKNECNSEEEPEYKINDLLKNIQQ 273
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 25.0 bits (53), Expect = 1.1
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 101 INNIVDHAIKGKDHATFNFLQWYVSEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKG 160
+N V +KG + NF ++ ++ + K+I+ KIE +G +Y A Y
Sbjct: 99 LNQKVLERLKGVKKVSVNFTTHHLQIVFDKSLNPKEIIQKIESLG-YGAKIYNAQNYTLK 157
Query: 161 IAKSRKS 167
K ++S
Sbjct: 158 AQKEQRS 164
>ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 100
Score = 25.0 bits (53), Expect = 1.1
Identities = 22/78 (28%), Positives = 39/78 (49%), Gaps = 5/78 (6%)
Query: 1 MLSKDIIKLLNEQVNKEMNSSNL-YMSMSSWCYTHSLDGA--GLFLFDHAAEEYEHAKKL 57
ML + I LL +N+ N+ ++++S YTH+LDG LF+ AA E L
Sbjct: 22 MLKRKNILLLFFSTEIMLNAINIGFVAISR--YTHNLDGQMFALFIIAIAASEVAIGLGL 79
Query: 58 IVFLNENNVPVQLTSISA 75
++ + + + S++A
Sbjct: 80 VILWFKKYKSLDIDSLNA 97
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 24.6 bits (52), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 126 EQHEEEVLFKDILDKIELIGNENHGLYLADQ 156
EQ + +FK LD+ E+ G + + LY+ DQ
Sbjct: 53 EQQQVLKVFKGELDQTEIKGIDLNDLYILDQ 83
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 24.3 bits (51), Expect = 1.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 58 IVFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQ 95
++ + EN +P ++ A E E + + K H Q
Sbjct: 1 MILMMENRMPKEIQKTEASEKSIEKVLNAYDKQQHHHQ 38
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 24.3 bits (51), Expect = 1.9
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 39 AGLFLFDHAAEEYEHAKKLIVFLNENNV----PVQLTSISA----PEHKFEGLTQIFQKA 90
AG+ L + + YE+ KKL F E + P+++ + E +
Sbjct: 249 AGIVLQAYIPDSYEYLKKLHAFSKERVLKGLKPIKIRFVKGANMESEETIASMKDWALPT 308
Query: 91 YEHEQHISESINNIVDHAIKGKDH 114
+ +Q + N ++D ++G ++
Sbjct: 309 FSSKQDTDSNYNKMLDFVLEGDNY 332
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 23.1 bits (48), Expect = 4.2
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 73 ISAPEHKFEGLTQIFQKAYEH--EQHISESINNIVDHAIKGK 112
I P HK + + ++F+ AY+ + ++ + ++D ++ K
Sbjct: 510 IITPTHKGKRVVEVFENAYQFIIDLTYTKQMEEVLDEIVENK 551
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 22.7 bits (47), Expect = 5.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 118 NFLQWYVSEQHEEEVLFKDILDKIELIGNEN 148
NF ++ EE+V+F L+++E+ +N
Sbjct: 56 NFRSNKETQNTEEDVIFPKALEEVEVYAKDN 86
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 22.7 bits (47), Expect = 5.4
Identities = 11/41 (26%), Positives = 19/41 (45%)
Query: 63 ENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINN 103
EN+ + T+ A KF+G T I + + + +NN
Sbjct: 669 ENSYNFKNTNFLAGNFKFQGKTTIEKSVLNDASYAFDGVNN 709
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 21.9 bits (45), Expect = 9.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 49 EEYEHAKKLIVFLNENN 65
+EYE +K +VF N N
Sbjct: 255 KEYERVEKQVVFKNNKN 271
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 21.9 bits (45), Expect = 9.2
Identities = 14/34 (41%), Positives = 16/34 (46%)
Query: 127 QHEEEVLFKDILDKIELIGNENHGLYLADQYVKG 160
Q E + D L KI L EN L L + VKG
Sbjct: 245 QVREALEINDELAKIVLANEENATLELLKERVKG 278
>ref|NP_223106.1| putative proline peptidase [Helicobacter pylori J99]
Length = 357
Score = 21.9 bits (45), Expect = 9.2
Identities = 13/58 (22%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
Query: 53 HAKKLIVFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIK 110
H +K I+ NE+ + + S + FE + +K ++ ++ +SE + H +K
Sbjct: 117 HRQKRII-KNEHEIQLLKKSQALNVEAFENFAEYVKKIFDEKESLSE---RYLQHKVK 170
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,365
Number of Sequences: 1491
Number of extensions: 8464
Number of successful extensions: 28
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 18
length of query: 167
length of database: 494,079
effective HSP length: 71
effective length of query: 96
effective length of database: 388,218
effective search space: 37268928
effective search space used: 37268928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)