BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645288|ref|NP_207458.1| hypothetical protein
[Helicobacter pylori 26695]
(171 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223327.1| putative [Helicobacter pylori J99] 340 1e-95
ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 30 0.046
ref|NP_223825.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 25 0.86
ref|NP_223498.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223674.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 23 3.3
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223793.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 23 4.3
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223290.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223860.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_223446.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 23 5.6
ref|NP_223886.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_223673.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99] 22 7.3
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 22 7.3
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 22 9.5
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 22 9.5
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 22 9.5
>ref|NP_223327.1| putative [Helicobacter pylori J99]
Length = 171
Score = 340 bits (872), Expect = 1e-95
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEED 60
MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEED
Sbjct: 1 MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEED 60
Query: 61 KNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKD 120
KNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKD
Sbjct: 61 KNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKD 120
Query: 121 GNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF 171
GNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF
Sbjct: 121 GNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF 171
>ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 343
Score = 29.6 bits (65), Expect = 0.046
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 13/120 (10%)
Query: 16 KLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVPDNVISLLA 75
KL SL TQKN A+L KI ++ A FI +E + L+ ++ + A
Sbjct: 108 KLTKSLQTQKNFAYLGKIKPQQL-------------ADFIINEHPQTIALILAHMEAPNA 154
Query: 76 ENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKDGNLPNINTLNFVKQI 135
F ++AE+ + I + V+ VS L L + L V +I
Sbjct: 155 AETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEI 214
>ref|NP_223825.1| putative [Helicobacter pylori J99]
Length = 253
Score = 26.6 bits (57), Expect = 0.39
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 123 LPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFN 156
+ + T NF+K+++ HP+ F + +N F N
Sbjct: 210 IARLATKNFLKEMQNLHPHFFDSLENAFNNVQAN 243
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 25.4 bits (54), Expect = 0.86
Identities = 27/132 (20%), Positives = 61/132 (45%), Gaps = 15/132 (11%)
Query: 7 KRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLV 66
K + + K ++LI + T + F K ++L F++N F++ +K L
Sbjct: 143 KNIEELKDKELIVNKGTTADFYFTKNYPNIKLL------KFEQNTETFLALLNNKAIALA 196
Query: 67 PDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKDGNLPNI 126
DN + L F+ + + ++D+I A +++ + +LLE L + + ++
Sbjct: 197 HDNTLLLAWVKQHPEFKLGITSLGDKDVIAPA------IKKGNPKLLEWL---NNEIDSL 247
Query: 127 NTLNFVKQIKKE 138
+ +F+K+ +E
Sbjct: 248 ISSDFLKEAYQE 259
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 24.3 bits (51), Expect = 1.9
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 43/149 (28%)
Query: 2 EKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDK 61
+ P K + S+KLIH+ ++Q+ FL +AN MLL L+
Sbjct: 111 DNTPLKEYKELLSEKLIHAKSSQE---FLN--TAN-MLLSLQ------------------ 146
Query: 62 NYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDF----EDVREVSLQLLENLR 117
V+S + EN RK +++A+ + +DF ++ E+ + L+
Sbjct: 147 ------SQVLSFVVENERKKAFLQMKAK-------KQSVDFYALYPNLGEIGGVIY--LK 191
Query: 118 QKDGNLPNINTLNFVKQIKKEHPNLFFNF 146
+K+ L TL K++ KE N F
Sbjct: 192 EKEKQLFLKTTLQRTKEVLKEAQNTLLGF 220
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 23.9 bits (50), Expect = 2.5
Identities = 16/66 (24%), Positives = 35/66 (52%), Gaps = 10/66 (15%)
Query: 36 NEMLLELEKGAFK-----KNEAYFISDEEDKN-----YVLVPDNVISLLAENARKAFEAR 85
+E E KG++ KN ++ I++ + ++ +++ ++ L+ ENA KAF+
Sbjct: 135 DEKRKEYLKGSYSEKEVAKNASFGITEIQKRSEKLLDFLIARYRIVELVGENAIKAFKNA 194
Query: 86 LRAELE 91
L E++
Sbjct: 195 LLKEIK 200
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.5 bits (49), Expect = 3.3
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 6 KKRVSKTKSQKLIHSLTTQKNRAFLKKISANE-----MLLE--LEKGAFKKNEAYFISDE 58
++R++K ++ K+ S + N +K + ML E +EKG + +A +SD
Sbjct: 409 RRRLNKPETGKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIEKGVISERDAESMSDR 468
Query: 59 EDKNYVLVP 67
E N + P
Sbjct: 469 EAFNLIFKP 477
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.5 bits (49), Expect = 3.3
Identities = 18/77 (23%), Positives = 38/77 (48%), Gaps = 11/77 (14%)
Query: 53 YFISDEEDKNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQL 112
Y + +EE K+Y L+ + L ENA + E + E++ + + E + +
Sbjct: 2096 YDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQN---------KQIAEQNKEK 2146
Query: 113 LENLRQKDGNLPNINTL 129
L+ ++++ + N+NTL
Sbjct: 2147 LDAIKKQFAS--NLNTL 2161
>ref|NP_223793.1| putative [Helicobacter pylori J99]
Length = 181
Score = 23.1 bits (48), Expect = 4.3
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 6/52 (11%)
Query: 17 LIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVPD 68
+IHS KN FL+ I E EL N F+S+ E K ++ +
Sbjct: 53 VIHSYEHAKNLLFLETIRTPEKAKEL------TNLGLFMSEAESKKLCVLKE 98
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 23.1 bits (48), Expect = 4.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 71 ISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKD 120
I+L+ EN RKAFE + EL ++ + + L L+ + QKD
Sbjct: 216 ITLVEENKRKAFETK---ELAQNFLNDLKNNLN-----PLAFLDAIEQKD 257
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 4.3
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 6 KKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEE 59
+K++S+ KS++ + SL +++ A + AN + L+ K+E + +E
Sbjct: 78 QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKE 131
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 23.1 bits (48), Expect = 4.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 70 VISLLAENARKAFEARLRAELERDI 94
VI L ENAR+AFE+ E ++ I
Sbjct: 602 VIDYLLENAREAFESYTDDESQKYI 626
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 22.7 bits (47), Expect = 5.6
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 67 PDNVISLLAENARKAFEARLRAELERDIITQAPIDFE----DVREVSLQLLENLRQKDGN 122
P + + L + +K + L+ +I +A D E ++R+ L+L EN + +
Sbjct: 65 PKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRL-ENDTRYFKD 123
Query: 123 LPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDN 165
+ LN+ + + F ++ + PP + NN E+ +N
Sbjct: 124 FTQVLALNYGSKNELSRA-----FKSLLENPPNHINNIESLEN 161
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 22.7 bits (47), Expect = 5.6
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 21 LTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEEDKNYVLVPDNVISLLAENARK 80
+T KNR + ++ +++E+G +K ++ + +E VL+ L +
Sbjct: 377 ITQYKNRLSEPFLDRIDLFVQMEEGNYKDTPSHSWTSKEMHELVLLAFKQQKL---RKQS 433
Query: 81 AFEARLRAELERDIITQAPIDFEDVREVSLQLLE--NLRQKDGN-----LPNINTLNFVK 133
AF +L E I P++ E +++ Q +E NL + N I LN +
Sbjct: 434 AFNGKLN---EEQIERFCPLNTE-AQKLLKQAVERFNLSMRSVNKAKKVARTIADLNACE 489
Query: 134 QIKKEH 139
I+K H
Sbjct: 490 NIEKSH 495
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 22.7 bits (47), Expect = 5.6
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 115 NLRQKD--GNLPNINTLNFVKQIKKEHPNLFFNFDNMFK 151
N +Q D GN N NF K N FN +N FK
Sbjct: 745 NAKQVDFNGNSFNGGVFNFNNTPKASFTNDTFNVNNQFK 783
>ref|NP_223886.1| putative [Helicobacter pylori J99]
Length = 340
Score = 22.3 bits (46), Expect = 7.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 89 ELERDIITQAPIDFEDVREVS 109
+L++ + API ED++E+S
Sbjct: 193 DLDKLAVLNAPITLEDIQELS 213
>ref|NP_223673.1| putative [Helicobacter pylori J99]
Length = 161
Score = 22.3 bits (46), Expect = 7.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 37 EMLLELEKGAFKKNEAYFISDEEDK 61
E LLE+E A +K + + DE DK
Sbjct: 14 ERLLEMEFNAHRKYDDANLDDEYDK 38
>ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99]
Length = 280
Score = 22.3 bits (46), Expect = 7.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 123 LPNINTLNFVKQIKKEHPNL 142
+ +N L F+ +KK+ PNL
Sbjct: 76 ISQLNALEFLDLLKKKFPNL 95
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 22.3 bits (46), Expect = 7.3
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 2/63 (3%)
Query: 79 RKAFEARLRAELERDIITQAPIDFEDVRE--VSLQLLENLRQKDGNLPNINTLNFVKQIK 136
+KA EA R I QAP D+ +V E V + D +P N + +++
Sbjct: 745 KKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKEL 804
Query: 137 KEH 139
K+H
Sbjct: 805 KDH 807
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 21.9 bits (45), Expect = 9.5
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Query: 103 EDV--REVSLQLLENLRQKDGNLPNINTLNFVKQIKKE 138
EDV +EV +Q++ NL+ + +++F KKE
Sbjct: 368 EDVLRKEVIMQMMSNLKLDYSKIEEKFSIDFKAHFKKE 405
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 21.9 bits (45), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 32 KISANEMLLELEKGAFKKNEAYFISDEEDKN 62
K +A E L+E KG + N+A +S KN
Sbjct: 372 KNNALEWLIEWVKGHYLPNDAINLSPIRQKN 402
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 21.9 bits (45), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 136 KKEHPNLFFN-FDNMFKQPPFNENNFENFDNSDEE 169
KK H L F + + PF ++ FE+ N D+E
Sbjct: 302 KKWHEALIQTPFKDAYFNAPFLDHLFESLQNKDKE 336
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,899
Number of Sequences: 1491
Number of extensions: 9698
Number of successful extensions: 34
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 22
length of query: 171
length of database: 494,079
effective HSP length: 72
effective length of query: 99
effective length of database: 386,727
effective search space: 38285973
effective search space used: 38285973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)