BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645291|ref|NP_207461.1| hypothetical protein
[Helicobacter pylori 26695]
(85 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223330.1| putative [Helicobacter pylori J99] 136 9e-35
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 23 1.1
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 22 1.8
ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS P... 22 1.8
ref|NP_223228.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 21 5.3
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 21 5.3
ref|NP_223211.1| cag island protein [Helicobacter pylori J99] 20 7.0
ref|NP_222912.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 20 9.1
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 20 9.1
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 20 9.1
ref|NP_222990.1| putative [Helicobacter pylori J99] 20 9.1
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 136 bits (342), Expect = 9e-35
Identities = 66/70 (94%), Positives = 66/70 (94%)
Query: 1 MQEISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER 60
MQEISAY LIKEKL AIPN RHKG LFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER
Sbjct: 1 MQEISAYELIKEKLHAIPNQRHKGSLFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER 60
Query: 61 DKGIDIVITT 70
DKGIDIVITT
Sbjct: 61 DKGIDIVITT 70
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 23.1 bits (48), Expect = 1.1
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 28 EKISKQFLQEHDSANE--YESIDLWYDWKLRGNERDKGIDIVITT 70
E +SK++LQEH++ E Y S+ + +++ N + + + + T
Sbjct: 307 EALSKEYLQEHEAFFEGIYPSVYEYREYRAGKNSQAEAHEAIRIT 351
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 22.3 bits (46), Expect = 1.8
Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 4/44 (9%)
Query: 8 TLIKEKLQAIPNLRHKGILFEKI-SKQFLQEHDSANEYESIDLW 50
T + E +++ NL L E+I +K F + D+ EY+ + LW
Sbjct: 551 TTLTEAMKSFENLAK---LTEEIENKVFSLKEDAILEYQEMSLW 591
>ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 315
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 19 NLRHKGILFEKISKQFLQEHDSANEYESIDLWY 51
N H G+ EK+ + + E + N +S D Y
Sbjct: 232 NPEHMGVAKEKVYHKMILEGEEVNLTQSFDNLY 264
>ref|NP_223228.1| putative [Helicobacter pylori J99]
Length = 416
Score = 22.3 bits (46), Expect = 1.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 41 ANEYESIDLWYDWK 54
AN Y D +Y+WK
Sbjct: 353 ANMYNRFDFYYNWK 366
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 20.8 bits (42), Expect = 5.3
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 34 FLQEHDSANEYE 45
F+ EH++AN+Y+
Sbjct: 36 FMLEHENANDYK 47
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 20.8 bits (42), Expect = 5.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 66 IVITTFKQRIHRCAMQIPSK 85
+V+T F++RIH ++ +K
Sbjct: 437 VVMTNFERRIHEMDEELDTK 456
>ref|NP_223211.1| cag island protein [Helicobacter pylori J99]
Length = 208
Score = 20.4 bits (41), Expect = 7.0
Identities = 8/28 (28%), Positives = 16/28 (56%)
Query: 3 EISAYTLIKEKLQAIPNLRHKGILFEKI 30
E+ + ++ L+ I +L+H + EKI
Sbjct: 87 EVFDFVIVNRVLKKIKDLKHYDPVIEKI 114
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 20.4 bits (41), Expect = 7.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 2 QEISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDSANEYESI 47
+E + YT L L H+ F I K++ + + N+ E+I
Sbjct: 375 RECNPYTAFNFHLNINNGLSHQFEKFVPIMKEYKEPKITDNDLEAI 420
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 20.0 bits (40), Expect = 9.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 13 KLQAIPNLRHKGILFEKISKQFLQEHDSANEYESI 47
K IP K FEK +K+ + ++ NE E++
Sbjct: 632 KSDLIPKHLIKQRFFEKETKELEELENALNEKEAL 666
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 25 ILFEKISKQFLQEHDSANEYESID 48
I EK ++FL+E + YE D
Sbjct: 458 ISVEKFCERFLEETNLLKSYEKED 481
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/26 (26%), Positives = 15/26 (56%)
Query: 12 EKLQAIPNLRHKGILFEKISKQFLQE 37
EK+++IP+ H G K+ +++
Sbjct: 29 EKVKSIPHATHFGPFIAKVQNGVIKD 54
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 4 ISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDSANEYESID 48
I + IK NL++ ++ K Q+H N++ ++D
Sbjct: 129 IDGISFIKSMRLKHENLKNNQTSLGEVLKLLDQKHQLLNQWHALD 173
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,201
Number of Sequences: 1491
Number of extensions: 3184
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 85
length of database: 494,079
effective HSP length: 61
effective length of query: 24
effective length of database: 403,128
effective search space: 9675072
effective search space used: 9675072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)